Rh3AG304700

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000797
Physical Location & Seq
Forward (+)
37643663 .. 37660730
17068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG304700.1

Sequence Viewer

Length: 1266 bp
ATGACCCATGTGTCGATGCTGTGTCCAAGCACAAACCATCCGTTTAACTTTCTGTTCCGAGTTGCCTCCATAACTCGCCACCCAATCCACAAGTCAAGCAACCAAGACTCACCTTCCTCTGCAACTCAATCCACCAGAAGATCGTTATCGATCATCATGGCCGTCTTAAACACTCTCTTTTTCTCAATACTGGTTCCGGTGGCGGCGGCTGTGCTCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTGAGTGAGCAAGTCGCGGCTGCCCCGAGGCGTAATGGTCACATGCTCAAAGGGTCGGAGTTTTTGGGTGTTGGGACTTTAGCAGGGCCAGAAGACGTTGCTTATGATTCCAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGCTGAACGAGTCCGCTGATGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCACTCGGACTCGCTCACGAACATGGCGGAAAGCTTTTGGTAGCTGACGCGGAAAAGGGACTACTGAGAATAGCTGAGGATGGAGCAGTGGAGCTGCTGACGGATGAGGCTGAGGGTGTAAAATTCAAACTAACAGATTGTGTAGATGTAGCGAAAGATGGTATGATTTACTTCACAGATGCTTCATATAAAAACGGCTTACAAGACTTCATCTGGGACTTTCTAGAGGGCAGACCCCATGGTAGGTTACTAAGCTACAATCCGTTTACCAAAGAGACCAAAGTGCTCATTCGCAACCTCTACTTTGCTAATGGAGTAGCACTCTCTCCAGATCAGAATTATGTGATCTTCTGCGAAACTTTCATGAAAAGATGTAGAAAGTACTACCTACAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCAGGCTCTCCGGATAATATACGATATGATGGGGAAGGCCATTACTGGATCGCAATACCTATGGGGACTTCAGTTATTTTGGATCTAGCACTTAGGTACCCTTTTATCCGAAAAGGGCTGGCAATCGTGGAGAAGTATATATTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTACTTGCTGTGAACTTGGAAGGGGAACCTACTGCCCATTATTTTGATCCAGATTTGTCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTACTGTGGCTCCGTTCTCAATCCATACATTATCCGCCTAGATCTGGAACAACATCCTGCACATGCCACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

421

Amino Acids

46.68

Weight (kDa)

6.02

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 104 - 142 1.1e-07 Strictosidine synthase-like, N-terminal
SGL PF08450 141 - 333 1.8e-13 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 209 - 294 8.5e-32 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc65I GGTACC 1 cut(s) 1017
AccB1I GGYRCC 1 cut(s) 1017
AccII CGCG 2 cut(s) 281, 536
AccIII TCCGGA 1 cut(s) 931
AclWI GGATC 5 cut(s) 422, 977, 1011, 1136, 1178
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 2 cut(s) 608, 1087
AcuI CTGAAG 1 cut(s) 975
AfaI GTAC 3 cut(s) 869, 1019, 1098
AfiI CCNNNNNNNGG 2 cut(s) 729, 1234
AgsI TTSAA 1 cut(s) 613
AjnI CCWGG 1 cut(s) 922
AluBI AGCT 7 cut(s) 226, 430, 520, 530, 560, 580, 741
AluI AGCT 7 cut(s) 226, 430, 520, 530, 560, 580, 741
Alw21I GWGCWC 2 cut(s) 216, 774
Alw26I GTCTC 2 cut(s) 478, 755
AlwI GGATC 5 cut(s) 422, 977, 1011, 1136, 1178
Ama87I CYCGRG 1 cut(s) 289
Aor13HI TCCGGA 1 cut(s) 931
AoxI GGCC 3 cut(s) 159, 350, 958
ApeKI GCWGC 2 cut(s) 284, 580
ApoI RAATTY 2 cut(s) 608, 1087
Asp718I GGTACC 1 cut(s) 1017
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 289
BaeI ACNNNNGTAYC 2 cut(s) 1001, 1034
BanI GGYRCC 1 cut(s) 1017
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 216, 774
BbvCI CCTCAGC 2 cut(s) 561, 597
BbvI GCAGC 2 cut(s) 271, 567
BccI CCATC 4 cut(s) 45, 560, 638, 944
BceAI ACGGC 2 cut(s) 146, 697
BciT130I CCWGG 1 cut(s) 924
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 478, 755
BfaI CTAG 3 cut(s) 710, 1007, 1229
BglII AGATCT 1 cut(s) 1231
BisI GCNGC 6 cut(s) 204, 207, 254, 282, 285, 581
BlsI GCNGC 6 cut(s) 205, 208, 255, 283, 286, 582
BmcAI AGTACT 1 cut(s) 869
Bme1390I CCNGG 2 cut(s) 242, 924
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 5 cut(s) 195, 246, 1019, 1122, 1201
BmrFI CCNGG 2 cut(s) 242, 924
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 6, 655
BmuI ACTGGG 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 792, 824
BpmI CTGGAG 1 cut(s) 798
Bpu10I CCTNAGC 2 cut(s) 561, 597
BpuMI CCSGG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 149
BsaBI GATNNNNATC 2 cut(s) 145, 1175
BsaI GGTCTC 2 cut(s) 478, 755
BsaJI CCNNGG 2 cut(s) 290, 724
BsaWI WCCGGW 2 cut(s) 196, 931
BsaXI ACNNNNNCTCC 2 cut(s) 1184, 1214
Bsc4I CCNNNNNNNGG 2 cut(s) 729, 1234
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 3 cut(s) 195, 470, 971
Bse8I GATNNNNATC 2 cut(s) 145, 1175
BseAI TCCGGA 1 cut(s) 931
BseBI CCWGG 1 cut(s) 924
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 290, 724
BseGI GGATG 5 cut(s) 37, 404, 571, 595, 1243
BseJI GATNNNNATC 2 cut(s) 145, 1175
BseLI CCNNNNNNNGG 2 cut(s) 729, 1234
BseMII CTCAG 3 cut(s) 542, 552, 588
BseNI ACTGG 3 cut(s) 195, 470, 971
BseRI GAGGAG 2 cut(s) 206, 237
BseXI GCAGC 2 cut(s) 271, 567
BsgI GTGCAG 1 cut(s) 1233
Bsh1236I CGCG 2 cut(s) 281, 536
BshFI GGCC 3 cut(s) 161, 352, 960
BshNI GGYRCC 1 cut(s) 1017
BshVI ATCGAT 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 216, 774
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 4 cut(s) 197, 242, 477, 932
BslFI GGGAC 5 cut(s) 352, 396, 558, 716, 1000
BslI CCNNNNNNNGG 2 cut(s) 729, 1234
BsmAI GTCTC 2 cut(s) 478, 755
BsmFI GGGAC 5 cut(s) 352, 396, 558, 716, 1000
BsnI GGCC 3 cut(s) 161, 352, 960
Bso31I GGTCTC 2 cut(s) 478, 755
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 2 cut(s) 216, 774
Bsp13I TCCGGA 1 cut(s) 931
Bsp19I CCATGG 1 cut(s) 724
BspANI GGCC 3 cut(s) 161, 352, 960
BspCNI CTCAG 3 cut(s) 543, 553, 589
BspDI ATCGAT 1 cut(s) 149
BspEI TCCGGA 1 cut(s) 931
BspFNI CGCG 2 cut(s) 281, 536
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 5 cut(s) 195, 246, 1019, 1122, 1201
BspPI GGATC 5 cut(s) 422, 977, 1011, 1136, 1178
BspT107I GGYRCC 1 cut(s) 1017
BspTNI GGTCTC 2 cut(s) 478, 755
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 3 cut(s) 195, 470, 971
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 290, 724
BssSI CACGAG 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 724
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 924
Bst4CI ACNGT 1 cut(s) 1196
BstC8I GCNNGC 1 cut(s) 1041
BstDEI CTNAG 5 cut(s) 551, 561, 597, 737, 1013
BstDSI CCRYGG 1 cut(s) 724
BstF5I GGATG 5 cut(s) 37, 404, 571, 595, 1243
BstFNI CGCG 2 cut(s) 281, 536
BstMAI GTCTC 2 cut(s) 478, 755
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNI CCWGG 1 cut(s) 924
BstNSI RCATGY 2 cut(s) 310, 1256
BstSCI CCNGG 2 cut(s) 240, 922
BstUI CGCG 2 cut(s) 281, 536
BstV1I GCAGC 2 cut(s) 271, 567
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 1003, 1231
BstYI RGATCY 2 cut(s) 1003, 1231
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 3 cut(s) 161, 352, 960
BsuTUI ATCGAT 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 724
BtsCI GGATG 5 cut(s) 37, 404, 571, 595, 1243
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 1041
CciI TCATGA 1 cut(s) 849
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 1 cut(s) 542
Csp6I GTAC 3 cut(s) 868, 1018, 1097
CviAII CATG 8 cut(s) 8, 157, 307, 509, 725, 850, 1253, 1263
CviQI GTAC 3 cut(s) 868, 1018, 1097
DdeI CTNAG 5 cut(s) 551, 561, 597, 737, 1013
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 159
EciI GGCGGA 2 cut(s) 528, 1214
Eco130I CCWWGG 1 cut(s) 724
Eco31I GGTCTC 2 cut(s) 478, 755
Eco57I CTGAAG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 1087
EcoRII CCWGG 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 724
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 8 cut(s) 11, 160, 310, 512, 728, 853, 1256, 1266
FaqI GGGAC 5 cut(s) 352, 396, 558, 716, 1000
FatI CATG 8 cut(s) 7, 156, 306, 508, 724, 849, 1252, 1262
FauI CCCGC 1 cut(s) 473
Fnu4HI GCNGC 6 cut(s) 204, 207, 254, 282, 285, 581
FokI GGATG 5 cut(s) 24, 411, 578, 602, 1230
Fsp4HI GCNGC 6 cut(s) 204, 207, 254, 282, 285, 581
FspBI CTAG 3 cut(s) 710, 1007, 1229
GluI GCNGC 6 cut(s) 204, 207, 254, 282, 285, 581
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 3 cut(s) 161, 352, 960
HapII CCGG 4 cut(s) 197, 242, 477, 932
HgaI GACGC 1 cut(s) 542
Hin1II CATG 8 cut(s) 11, 160, 310, 512, 728, 853, 1256, 1266
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 8 cut(s) 107, 230, 371, 384, 423, 437, 449, 495
HpaII CCGG 4 cut(s) 197, 242, 477, 932
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 3 cut(s) 753, 1097, 1108
Hpy188I TCNGA 6 cut(s) 59, 322, 494, 822, 1031, 1181
Hpy8I GTNNAC 3 cut(s) 753, 1097, 1108
HpyAV CCTTC 3 cut(s) 123, 950, 1109
HpyCH4III ACNGT 1 cut(s) 1196
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 2 cut(s) 122, 1250
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 5 cut(s) 551, 561, 597, 737, 1013
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 8 cut(s) 11, 160, 310, 512, 728, 853, 1256, 1266
Kpn2I TCCGGA 1 cut(s) 931
KpnI GGTACC 1 cut(s) 1021
LmnI GCTCC 6 cut(s) 219, 250, 569, 577, 894, 1205
Lsp1109I GCAGC 2 cut(s) 271, 567
LweI GCATC 2 cut(s) 6, 655
MaeI CTAG 3 cut(s) 710, 1007, 1229
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 3 cut(s) 302, 732, 1152
MboII GAAGA 5 cut(s) 150, 368, 826, 898, 1096
MflI RGATCY 2 cut(s) 1003, 1231
MhlI GDGCHC 2 cut(s) 216, 774
MluCI AATT 3 cut(s) 608, 823, 1087
MlyI GAGTC 7 cut(s) 101, 224, 378, 432, 443, 446, 489
MmeI TCCRAC 1 cut(s) 300
MroI TCCGGA 1 cut(s) 931
MseI TTAA 3 cut(s) 45, 167, 471
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 4 cut(s) 197, 242, 477, 932
MspR9I CCNGG 2 cut(s) 242, 924
MvaI CCWGG 1 cut(s) 924
MvnI CGCG 2 cut(s) 281, 536
MwoI GCNNNNNNNGC 1 cut(s) 427
NciI CCSGG 1 cut(s) 242
NcoI CCATGG 1 cut(s) 724
NlaIII CATG 8 cut(s) 11, 160, 310, 512, 728, 853, 1256, 1266
NlaIV GGNNCC 5 cut(s) 195, 246, 1019, 1122, 1201
NmuCI GTSAC 2 cut(s) 302, 1152
NspI RCATGY 2 cut(s) 310, 1256
PagI TCATGA 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 6 cut(s) 205, 208, 255, 283, 286, 582
PleI GAGTC 7 cut(s) 101, 224, 378, 431, 443, 445, 489
PpsI GAGTC 7 cut(s) 101, 224, 378, 431, 443, 445, 489
Psp6I CCWGG 1 cut(s) 922
PspGI CCWGG 1 cut(s) 922
PspN4I GGNNCC 5 cut(s) 195, 246, 1019, 1122, 1201
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 2 cut(s) 1003, 1231
RsaI GTAC 3 cut(s) 869, 1019, 1098
RsaNI GTAC 3 cut(s) 868, 1018, 1097
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 3 cut(s) 45, 167, 471
SatI GCNGC 6 cut(s) 204, 207, 254, 282, 285, 581
Sau96I GGNCC 1 cut(s) 350
ScaI AGTACT 1 cut(s) 869
SchI GAGTC 7 cut(s) 101, 224, 378, 432, 443, 446, 489
ScrFI CCNGG 2 cut(s) 242, 924
SduI GDGCHC 2 cut(s) 216, 774
SfaNI GCATC 2 cut(s) 6, 655
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 3 cut(s) 608, 823, 1087
SspMI CTAG 3 cut(s) 710, 1007, 1229
StyD4I CCNGG 2 cut(s) 240, 922
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 1 cut(s) 1196
TaiI ACGT 1 cut(s) 363
TaqI TCGA 4 cut(s) 14, 149, 228, 237
TasI AATT 3 cut(s) 608, 823, 1087
TatI WGTACW 2 cut(s) 867, 1096
TauI GCSGC 4 cut(s) 206, 209, 256, 284
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 45, 167, 471
Tru9I TTAA 3 cut(s) 45, 167, 471
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 2 cut(s) 302, 1152
TseI GCWGC 2 cut(s) 284, 580
Tsp45I GTSAC 2 cut(s) 302, 1152
TspDTI ATGAA 5 cut(s) 660, 685, 838, 866, 898
TspGWI ACGGA 4 cut(s) 30, 602, 738, 1192
TspRI CASTG 1 cut(s) 579
XapI RAATTY 2 cut(s) 608, 1087
XbaI TCTAGA 1 cut(s) 709
XceI RCATGY 2 cut(s) 310, 1256
XspI CTAG 3 cut(s) 710, 1007, 1229
ZrmI AGTACT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.