Rh2CG119100

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000797
Physical Location & Seq
Reverse (-)
10484004 .. 10487549
3546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG119100.1

Sequence Viewer

Length: 978 bp
ATGCCCGAGTCAAACAACCATAACTCACCTTCCCCTTCAACTCAAGCTAGTAGAAGATCATCATCATCTTCATCATGGCCTTTGAACTTTCTCCTCTTCTCAATACTGGTTCCGGTGGCGGCAGCTCTGGTAATCCTCTACCAGCTCGACCCGTTCGACCCGGCTCCTCTGCCTCTTCACGAGTTGAGCCACCGAGTCGCCGCTGCCCCAGCGCATAATGCTCACATGCTCAAAGGGTCGGAGTTTATAGGTGCTGGGGCTTTAGTGGCGCCGGAAGACGTTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGCTGCGCGGACGGGTGGGTGAAGCGAGTCACGTTGAACGAGTCGGCTGCTGACTCAGTGGTTGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGTCATAACGGTCAGCTTTTGGTGGCGGACACAGAAAAGGGATTACTGAGTATAAGTGAGGATGGAGAAGTGGAGCTGTTGACTGATGAGGCTGAGGGTGTGAAATTCAAGCTAACAGATGCTGTGGATGTAGCAAAAGATGGCATGATTTACTTCACAGATGCTTCATATAAGTACAGCTTCAAAGACTTTATCTGGGACGTTTTGGAGGGCAAACCGCATGGAAGATTACTCAGCTACGATCCAACTATCAAAGAGACCAAAGTGCTAGTCCCCGACCTCTACTTTGGCAATGGAGTTGCAGTCTCTCCGGATCAGAATTTTGTGATCTTCTGTGAAACTGTCATGAGAAGATGTAAAAAGTACTACCTGCAAGACAAGAAGAAAGGAAACGTAGAGAACTTCATTGACAACTTGCCGGGCACCCCTGATAATATTCGATATGATGGGGAAGGCCATTACTGGATTGCATTTTCTACGGTAATCCATTTTCTGTCTTCTAGACAAGGAGAGGGTTGTGAAAGCTTCTTGCATTCTAATTTGGAGTGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

325

Amino Acids

35.72

Weight (kDa)

5.19

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 77 - 115 1.6e-06 Strictosidine synthase-like, N-terminal
SGL PF08450 131 - 299 1.9e-14 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 181 - 267 1.3e-34 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 801
AccB1I GGYRCC 2 cut(s) 268, 845
AccII CGCG 1 cut(s) 323
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 6 cut(s) 119, 201, 323, 399, 449, 641
AclWI GGATC 2 cut(s) 659, 744
AcsI RAATTY 2 cut(s) 527, 742
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 2 cut(s) 599, 788
AgsI TTSAA 6 cut(s) 39, 85, 294, 352, 532, 607
AluBI AGCT 9 cut(s) 47, 125, 145, 439, 499, 535, 603, 660, 948
AluI AGCT 9 cut(s) 47, 125, 145, 439, 499, 535, 603, 660, 948
Alw26I GTCTC 3 cut(s) 397, 674, 733
AlwI GGATC 2 cut(s) 659, 744
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 2 cut(s) 77, 877
ApeKI GCWGC 4 cut(s) 122, 203, 318, 362
ApoI RAATTY 2 cut(s) 527, 742
ArsI GACNNNNNNTTYG 4 cut(s) 678, 692, 710, 724
AspLEI GCGC 3 cut(s) 214, 271, 323
AsuC2I CCSGG 2 cut(s) 161, 843
AsuHPI GGTGA 2 cut(s) 18, 346
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 848
BanI GGYRCC 2 cut(s) 268, 845
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 282, 912
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 4 cut(s) 134, 190, 305, 349
BccI CCATC 3 cut(s) 479, 557, 863
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BcnI CCSGG 2 cut(s) 161, 843
BcoDI GTCTC 3 cut(s) 397, 674, 733
BfaI CTAG 3 cut(s) 48, 692, 924
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 801
BisI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
BlsI GCNGC 6 cut(s) 121, 124, 202, 205, 320, 364
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 2 cut(s) 161, 843
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 4 cut(s) 111, 165, 270, 847
BmrFI CCNGG 2 cut(s) 161, 843
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 2 cut(s) 532, 574
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 282, 912
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 161, 843
BsaBI GATNNNNATC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 2 cut(s) 397, 674
BsaWI WCCGGW 2 cut(s) 112, 733
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 111, 389, 890
Bse3DI GCAATG 1 cut(s) 721
Bse8I GATNNNNATC 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 733
BseGI GGATG 2 cut(s) 490, 556
BseJI GATNNNNATC 1 cut(s) 61
BseMI GCAATG 1 cut(s) 721
BseMII CTCAG 4 cut(s) 384, 461, 507, 670
BseNI ACTGG 3 cut(s) 111, 389, 890
BseRI GAGGAG 2 cut(s) 83, 156
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 4 cut(s) 134, 190, 305, 349
BseYI CCCAGC 2 cut(s) 208, 254
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 79, 879
BshNI GGYRCC 2 cut(s) 268, 845
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
BslFI GGGAC 3 cut(s) 315, 635, 680
BsmAI GTCTC 3 cut(s) 397, 674, 733
BsmFI GGGAC 3 cut(s) 315, 635, 680
BsmI GAATGC 1 cut(s) 955
BsnI GGCC 2 cut(s) 79, 879
Bso31I GGTCTC 2 cut(s) 397, 674
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 733
Bsp143I GATC 4 cut(s) 56, 664, 736, 750
BspACI CCGC 6 cut(s) 119, 201, 323, 399, 449, 641
BspANI GGCC 2 cut(s) 79, 879
BspCNI CTCAG 4 cut(s) 383, 462, 508, 669
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 4 cut(s) 111, 165, 270, 847
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 2 cut(s) 659, 744
BspT107I GGYRCC 2 cut(s) 268, 845
BspTNI GGTCTC 2 cut(s) 397, 674
BsrDI GCAATG 1 cut(s) 721
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 3 cut(s) 111, 389, 890
BssAI RCCGGY 1 cut(s) 395
BssMI GATC 4 cut(s) 56, 664, 736, 750
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 4 cut(s) 425, 434, 766, 904
Bst6I CTCTTC 2 cut(s) 101, 180
BstACI GRCGYC 1 cut(s) 269
BstDEI CTNAG 4 cut(s) 370, 470, 516, 656
BstF5I GGATG 2 cut(s) 490, 556
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 214, 271, 323
BstKTI GATC 4 cut(s) 59, 667, 739, 753
BstMAI GTCTC 3 cut(s) 397, 674, 733
BstMBI GATC 4 cut(s) 56, 664, 736, 750
BstMWI GCNNNNNNNGC 3 cut(s) 209, 218, 266
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 159, 841
BstSLI GKGCMC 1 cut(s) 848
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 134, 190, 305, 349
BstV2I GAAGAC 2 cut(s) 282, 912
BsuRI GGCC 2 cut(s) 79, 879
BtsCI GGATG 2 cut(s) 490, 556
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 801
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 1 cut(s) 768
CfoI GCGC 3 cut(s) 214, 271, 323
Cfr10I RCCGGY 1 cut(s) 395
Csp6I GTAC 2 cut(s) 598, 787
CviAII CATG 5 cut(s) 75, 226, 568, 644, 769
CviQI GTAC 2 cut(s) 598, 787
DdeI CTNAG 4 cut(s) 370, 470, 516, 656
DinI GGCGCC 1 cut(s) 270
DpnI GATC 4 cut(s) 58, 666, 738, 752
DpnII GATC 4 cut(s) 56, 664, 736, 750
Eam1104I CTCTTC 2 cut(s) 101, 180
EarI CTCTTC 2 cut(s) 101, 180
EciI GGCGGA 1 cut(s) 464
Eco31I GGTCTC 2 cut(s) 397, 674
Eco88I CYCGRG 1 cut(s) 5
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 5 cut(s) 78, 229, 571, 647, 772
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 3 cut(s) 315, 635, 680
FatI CATG 5 cut(s) 74, 225, 567, 643, 768
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
FokI GGATG 2 cut(s) 497, 563
Fsp4HI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
FspBI CTAG 3 cut(s) 48, 692, 924
GlaI GCGC 3 cut(s) 213, 270, 322
GluI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
GsaI CCCAGC 2 cut(s) 212, 258
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 79, 879
HapII CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
HhaI GCGC 3 cut(s) 214, 271, 323
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 5 cut(s) 78, 229, 571, 647, 772
Hin6I GCGC 3 cut(s) 212, 269, 321
HinP1I GCGC 3 cut(s) 212, 269, 321
HincII GTYRAC 2 cut(s) 391, 504
HindII GTYRAC 2 cut(s) 391, 504
HindIII AAGCTT 1 cut(s) 946
HinfI GANTC 8 cut(s) 8, 195, 290, 303, 342, 356, 368, 414
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
HphI GGTGA 2 cut(s) 18, 346
Hpy166II GTNNAC 2 cut(s) 391, 504
Hpy188I TCNGA 3 cut(s) 241, 413, 741
Hpy188III TCNNGA 5 cut(s) 179, 300, 734, 769, 924
Hpy8I GTNNAC 2 cut(s) 391, 504
HpyAV CCTTC 3 cut(s) 39, 45, 869
HpyCH4III ACNGT 4 cut(s) 425, 434, 766, 904
HpyCH4IV ACGT 4 cut(s) 279, 347, 624, 816
HpyCH4V TGCA 5 cut(s) 725, 796, 893, 955, 972
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 218, 266
HpyF3I CTNAG 4 cut(s) 370, 470, 516, 656
HpySE526I ACGT 4 cut(s) 279, 347, 624, 816
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 5 cut(s) 78, 229, 571, 647, 772
HspAI GCGC 3 cut(s) 212, 269, 321
KasI GGCGCC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 733
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 56, 664, 736, 750
LmnI GCTCC 2 cut(s) 169, 496
Lsp1109I GCAGC 4 cut(s) 134, 190, 305, 349
LweI GCATC 2 cut(s) 532, 574
MaeI CTAG 3 cut(s) 48, 692, 924
MaeII ACGT 4 cut(s) 279, 347, 624, 816
MaeIII GTNAC 1 cut(s) 343
MalI GATC 4 cut(s) 58, 666, 738, 752
MboI GATC 4 cut(s) 56, 664, 736, 750
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 3 cut(s) 527, 742, 961
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 7 cut(s) 17, 204, 297, 351, 362, 365, 408
MmeI TCCRAC 2 cut(s) 219, 692
MroI TCCGGA 1 cut(s) 733
MseI TTAA 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
MspR9I CCNGG 2 cut(s) 161, 843
Mva1269I GAATGC 1 cut(s) 955
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 3 cut(s) 209, 218, 266
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 2 cut(s) 161, 843
NdeII GATC 4 cut(s) 56, 664, 736, 750
NlaIII CATG 5 cut(s) 78, 229, 571, 647, 772
NlaIV GGNNCC 4 cut(s) 111, 165, 270, 847
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 229
PagI TCATGA 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 955
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 6 cut(s) 121, 124, 202, 205, 320, 364
PleI GAGTC 7 cut(s) 16, 203, 297, 350, 362, 364, 408
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 7 cut(s) 16, 203, 297, 350, 362, 364, 408
PspFI CCCAGC 2 cut(s) 208, 254
PspN4I GGNNCC 4 cut(s) 111, 165, 270, 847
PstNI CAGNNNCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 599, 788
RsaNI GTAC 2 cut(s) 598, 787
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
Sau3AI GATC 4 cut(s) 56, 664, 736, 750
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 7 cut(s) 17, 204, 297, 351, 362, 365, 408
ScrFI CCNGG 2 cut(s) 161, 843
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 2 cut(s) 532, 574
SfoI GGCGCC 1 cut(s) 270
SgrAI CRCCGGYG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 3 cut(s) 527, 742, 961
SsiI CCGC 6 cut(s) 119, 201, 323, 399, 449, 641
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 859
SspMI CTAG 3 cut(s) 48, 692, 924
StyD4I CCNGG 2 cut(s) 159, 841
TaaI ACNGT 4 cut(s) 425, 434, 766, 904
TaiI ACGT 4 cut(s) 282, 350, 627, 819
TaqI TCGA 3 cut(s) 147, 156, 862
TasI AATT 3 cut(s) 527, 742, 961
TatI WGTACW 2 cut(s) 597, 786
TauI GCSGC 2 cut(s) 122, 203
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 4 cut(s) 122, 203, 318, 362
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 60, 579, 817
TspRI CASTG 1 cut(s) 378
XapI RAATTY 2 cut(s) 527, 742
XbaI TCTAGA 1 cut(s) 923
XceI RCATGY 1 cut(s) 229
XspI CTAG 3 cut(s) 48, 692, 924
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.