Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

19089026 .. 19090662

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCCTGTATTCCTCTCTTCTCGTTTTCTCTTCTTCTGCATCATCGTCCCCTTACTCATCTCTATCACTCTCTACCAACTCGACACGTTTGACCCAGCTCATCATCCCGCTGACTCACTCATCTCCTCTACTGCTTCAATCCCGCCTCTAATAAACGAAAGATTTCTCACCGGAGCTGAGTTTATCGGAGTCGGTCTTCTCAATAGCCCCGAAGACATCGCCTACCATGAAGACTCTGGTTTCATCTACACTGGTTGCGTTGATGGATGGGTCAAACGAGTCAAGGTCGCCGAGTCGGTTAATGACTCACTCGTTGAAGATTTGGTCAACACCGGTGGTAGACCGCTCGGAATCGCTTTCGGAATCCACGGCGAAGTCATCGTCGCTGACGCTTACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTGTTAACGGAAGAAGCGGACGGCGTTAGATTTAAGCTACCGGATGCAGTTACTGTTGCAGATAACGGCGTTTTGTATTTCACTGATGGTTCTTATAAGTACAATCTCCATCAGTTTAGTTTTGATATCTTGGAAGGCAAACCACACGGTCGTCTCATGAGCTTTGATCCCACCACAAAAGTGACACGTGTACTTCTCAGAGATCTCTACTTTGCTAATGGTGTCTCTCTGTCTCCTGATCAAACCCATCTCGTCTTCTGCGAAACCCCCATAAGAAGATGTAGTAAGTATTACATCAATGGAGGGCGCGTGGAGTTATTTATTCAAGGCTTACCAGGCTATCCAGATAACATCCGGTATGATGGAGATGGACATTACTGGATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCTTTCAATGAAATACCCATTCTTGAGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATGAACCTATGTTTATGGAGAATGCAGGAGTTTTGCAGGTGGATTTGGATGGGAACCCCATCGCATACTACCATGATCAGGCGCTCTCTCACATAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAGTCTCTGGCATTCACACATTCTCCGACTTGATCTCCTAAAATACCCTGCACAAAACAAGAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016787 GO:0016788 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

371

Amino Acids

41.38

Weight (kDa)

5.83

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	113 - 279	3.7e-13	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	161 - 247	7.9e-37	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AarI	CACCTGC	1 cut(s)	940
Acc36I	ACCTGC	1 cut(s)	940
AccBSI	CCGCTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	1 cut(s)	747
AciI	CCGC	6 cut(s)	108, 143, 344, 417, 455, 899
AclI	AACGTT	1 cut(s)	845
AclWI	GGATC	1 cut(s)	599
AcvI	CACGTG	1 cut(s)	626
AfaI	GTAC	3 cut(s)	539, 630, 908
AfiI	CCNNNNNNNGG	1 cut(s)	991
AflIII	ACRYGT	3 cut(s)	84, 623, 625
AgeI	ACCGGT	2 cut(s)	332, 1013
AgsI	TTSAA	5 cut(s)	138, 317, 409, 764, 861
AjnI	CCWGG	1 cut(s)	772
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	7 cut(s)	98, 176, 475, 600, 856, 893, 1111
AluI	AGCT	7 cut(s)	98, 176, 475, 600, 856, 893, 1111
Alw26I	GTCTC	4 cut(s)	596, 667, 675, 1055
AlwI	GGATC	1 cut(s)	599
AlwNI	CAGNNNCTG	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AsiGI	ACCGGT	2 cut(s)	332, 1013
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	2 cut(s)	747, 997
AsuHPI	GGTGA	2 cut(s)	160, 431
BbrPI	CACGTG	1 cut(s)	626
BbsI	GAAGAC	5 cut(s)	188, 219, 237, 437, 685
BccI	CCATC	9 cut(s)	257, 261, 518, 555, 693, 794, 800, 956, 980
BceAI	ACGGC	4 cut(s)	385, 475, 520, 925
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	1 cut(s)	774
BclI	TGATCA	2 cut(s)	676, 988
BcoDI	GTCTC	4 cut(s)	596, 667, 675, 1055
BfoI	RGCGCY	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	940
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	1 cut(s)	900
BlsI	GCNGC	1 cut(s)	901
Bme1390I	CCNGG	1 cut(s)	774
BmiI	GGNNCC	1 cut(s)	968
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	2 cut(s)	48, 472
BpiI	GAAGAC	5 cut(s)	188, 219, 237, 437, 685
BpuEI	CTTGAG	1 cut(s)	898
BsaAI	YACGTR	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	5 cut(s)	170, 332, 478, 792, 1013
BsaXI	ACNNNNNCTCC	6 cut(s)	732, 762, 1053, 1065, 1083, 1095
Bsc4I	CCNNNNNNNGG	1 cut(s)	991
Bse118I	RCCGGY	2 cut(s)	332, 1013
Bse1I	ACTGG	2 cut(s)	256, 821
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	5 cut(s)	103, 272, 487, 789, 967
BseLI	CCNNNNNNNGG	1 cut(s)	991
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	2 cut(s)	168, 649
BseNI	ACTGG	2 cut(s)	256, 821
BseRI	GAGGAG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	1080
Bsh1236I	CGCG	1 cut(s)	747
Bsh1285I	CGRYCG	1 cut(s)	589
BshTI	ACCGGT	2 cut(s)	332, 1013
BsiEI	CGRYCG	1 cut(s)	589
BsiSI	CCGG	5 cut(s)	171, 333, 479, 793, 1014
BslFI	GGGAC	2 cut(s)	32, 414
BslI	CCNNNNNNNGG	1 cut(s)	991
BsmAI	GTCTC	4 cut(s)	596, 667, 675, 1055
BsmBI	CGTCTC	1 cut(s)	596
BsmFI	GGGAC	2 cut(s)	32, 414
BsmI	GAATGC	2 cut(s)	940, 1057
Bsp143I	GATC	5 cut(s)	604, 640, 676, 988, 1078
BspACI	CCGC	6 cut(s)	108, 143, 344, 417, 455, 899
BspCNI	CTCAG	2 cut(s)	169, 648
BspFNI	CGCG	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	968
BspMI	ACCTGC	1 cut(s)	940
BspPI	GGATC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	831
BsrFI	RCCGGY	2 cut(s)	332, 1013
BsrI	ACTGG	2 cut(s)	256, 821
BssAI	RCCGGY	2 cut(s)	332, 1013
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	5 cut(s)	604, 640, 676, 988, 1078
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	3 cut(s)	405, 493, 587
Bst6I	CTCTTC	2 cut(s)	22, 35
BstBAI	YACGTR	1 cut(s)	626
BstDEI	CTNAG	3 cut(s)	177, 635, 903
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	5 cut(s)	103, 272, 487, 789, 967
BstFNI	CGCG	1 cut(s)	747
BstH2I	RGCGCY	1 cut(s)	998
BstHHI	GCGC	2 cut(s)	747, 997
BstKTI	GATC	5 cut(s)	607, 643, 679, 991, 1081
BstMAI	GTCTC	4 cut(s)	596, 667, 675, 1055
BstMBI	GATC	5 cut(s)	604, 640, 676, 988, 1078
BstMCI	CGRYCG	1 cut(s)	589
BstMWI	GCNNNNNNNGC	2 cut(s)	774, 899
BstNI	CCWGG	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	772
BstUI	CGCG	1 cut(s)	747
BstV2I	GAAGAC	5 cut(s)	188, 219, 237, 437, 685
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BtgI	CCRYGG	1 cut(s)	367
BtgZI	GCGATG	2 cut(s)	202, 958
BtsCI	GGATG	5 cut(s)	103, 272, 487, 789, 967
BtsIMutI	CAGTG	2 cut(s)	249, 519
BveI	ACCTGC	1 cut(s)	940
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	2 cut(s)	747, 997
Cfr10I	RCCGGY	2 cut(s)	332, 1013
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	538, 629, 907
CspAI	ACCGGT	2 cut(s)	332, 1013
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	3 cut(s)	227, 595, 986
CviQI	GTAC	3 cut(s)	538, 629, 907
DdeI	CTNAG	3 cut(s)	177, 635, 903
DpnI	GATC	5 cut(s)	606, 642, 678, 990, 1080
DpnII	GATC	5 cut(s)	604, 640, 676, 988, 1078
Eam1104I	CTCTTC	2 cut(s)	22, 35
EarI	CTCTTC	2 cut(s)	22, 35
Eco32I	GATATC	1 cut(s)	565
Eco72I	CACGTG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	596
FaeI	CATG	3 cut(s)	230, 598, 989
FaqI	GGGAC	2 cut(s)	32, 414
FatI	CATG	3 cut(s)	226, 594, 985
FauI	CCCGC	2 cut(s)	115, 150
FbaI	TGATCA	2 cut(s)	676, 988
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	900
FokI	GGATG	5 cut(s)	90, 279, 494, 776, 974
Fsp4HI	GCNGC	1 cut(s)	900
GlaI	GCGC	2 cut(s)	746, 996
GluI	GCNGC	1 cut(s)	900
GsaI	CCCAGC	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	998
HapII	CCGG	5 cut(s)	171, 333, 479, 793, 1014
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	2 cut(s)	747, 997
Hin1II	CATG	3 cut(s)	230, 598, 989
Hin6I	GCGC	2 cut(s)	745, 995
HinP1I	GCGC	2 cut(s)	745, 995
HincII	GTYRAC	2 cut(s)	328, 444
HindII	GTYRAC	2 cut(s)	328, 444
HindIII	AAGCTT	2 cut(s)	854, 1109
HinfI	GANTC	8 cut(s)	113, 189, 233, 279, 293, 305, 351, 363
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	5 cut(s)	171, 333, 479, 793, 1014
HphI	GGTGA	2 cut(s)	160, 431
Hpy166II	GTNNAC	4 cut(s)	328, 341, 444, 629
Hpy188I	TCNGA	5 cut(s)	188, 350, 362, 638, 1073
Hpy188III	TCNNGA	6 cut(s)	595, 674, 782, 834, 877, 1021
Hpy8I	GTNNAC	4 cut(s)	328, 341, 444, 629
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	566, 840
HpyCH4III	ACNGT	3 cut(s)	405, 493, 587
HpyCH4IV	ACGT	3 cut(s)	86, 625, 845
HpyCH4V	TGCA	7 cut(s)	39, 485, 497, 824, 938, 949, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	774, 899
HpyF3I	CTNAG	3 cut(s)	177, 635, 903
HpySE526I	ACGT	3 cut(s)	86, 625, 845
Hsp92II	CATG	3 cut(s)	230, 598, 989
HspAI	GCGC	2 cut(s)	745, 995
Ksp22I	TGATCA	2 cut(s)	676, 988
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	5 cut(s)	604, 640, 676, 988, 1078
LmnI	GCTCC	1 cut(s)	173
LweI	GCATC	2 cut(s)	48, 472
MaeII	ACGT	3 cut(s)	86, 625, 845
MaeIII	GTNAC	4 cut(s)	419, 487, 619, 838
MalI	GATC	5 cut(s)	606, 642, 678, 990, 1080
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	5 cut(s)	604, 640, 676, 988, 1078
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	1 cut(s)	437
MlyI	GAGTC	6 cut(s)	107, 198, 227, 288, 299, 302
MmeI	TCCRAC	1 cut(s)	1096
MnlI	CCTC	5 cut(s)	23, 136, 156, 734, 873
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	3 cut(s)	300, 443, 471
MslI	CAYNNNNRTG	2 cut(s)	617, 893
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	5 cut(s)	171, 333, 479, 793, 1014
MspR9I	CCNGG	1 cut(s)	774
Mva1269I	GAATGC	2 cut(s)	940, 1057
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	774, 899
NdeII	GATC	5 cut(s)	604, 640, 676, 988, 1078
NlaIII	CATG	3 cut(s)	230, 598, 989
NlaIV	GGNNCC	1 cut(s)	968
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	419, 619
OliI	CACNNNNGTG	1 cut(s)	617
PagI	TCATGA	1 cut(s)	594
PaqCI	CACCTGC	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PctI	GAATGC	2 cut(s)	940, 1057
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	351, 363
PinAI	ACCGGT	2 cut(s)	332, 1013
PkrI	GCNGC	1 cut(s)	901
PleI	GAGTC	6 cut(s)	107, 197, 227, 287, 299, 301
PmaCI	CACGTG	1 cut(s)	626
PmlI	CACGTG	1 cut(s)	626
PpsI	GAGTC	6 cut(s)	107, 197, 227, 287, 299, 301
Ppu21I	YACGTR	1 cut(s)	626
PsiI	TTATAA	1 cut(s)	534
Psp1406I	AACGTT	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	772
PspCI	CACGTG	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	1 cut(s)	968
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	3 cut(s)	539, 630, 908
RsaNI	GTAC	3 cut(s)	538, 629, 907
RseI	CAYNNNNRTG	2 cut(s)	617, 893
SaqAI	TTAA	3 cut(s)	300, 443, 471
SatI	GCNGC	1 cut(s)	900
Sau3AI	GATC	5 cut(s)	604, 640, 676, 988, 1078
SchI	GAGTC	6 cut(s)	107, 198, 227, 288, 299, 302
ScrFI	CCNGG	1 cut(s)	774
SfaNI	GCATC	2 cut(s)	48, 472
SgrAI	CRCCGGYG	2 cut(s)	332, 1013
SmiMI	CAYNNNNRTG	2 cut(s)	617, 893
SmlI	CTYRAG	1 cut(s)	877
SmoI	CTYRAG	1 cut(s)	877
Sse9I	AATT	1 cut(s)	437
SsiI	CCGC	6 cut(s)	108, 143, 344, 417, 455, 899
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	3 cut(s)	405, 493, 587
TaiI	ACGT	3 cut(s)	89, 628, 848
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	1 cut(s)	437
TatI	WGTACW	2 cut(s)	537, 628
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	2 cut(s)	351, 363
Tru1I	TTAA	3 cut(s)	300, 443, 471
Tru9I	TTAA	3 cut(s)	300, 443, 471
TscAI	CASTG	2 cut(s)	256, 526
TseFI	GTSAC	2 cut(s)	419, 619
Tsp45I	GTSAC	2 cut(s)	419, 619
TspDTI	ATGAA	4 cut(s)	232, 243, 878, 930
TspGWI	ACGGA	2 cut(s)	449, 461
TspRI	CASTG	2 cut(s)	256, 526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.