Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016955.1

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

504 .. 2478

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgcccaagtcaagcaaccaagactcgccttcctctgcaactcaatctaccagaagatcatcatcatcatggcccttaaacattctcttcttctcaatactgcttccggtggcggctgctgtggtcctctaccagcttgactcattcgacccagctcctctgccgcttcgcgagttgatggggccagaagacgttgcttatgattcaaagtcgggactgatttacacgggatgtgcggacgggtggatcaagcgagtcaagttgaacgagtcggctgctgactcggtggtggagaactgggttaataccggcgggagaccattcggactcgcacacggtcataacggagagctgttggtggcggacggggaaaggggactactgagaatagacgaggatagagcagtggagctgctgacagatgaggctgagggtgtaaaattcaagctaacaaactgtgtagatgtagcgaaagatggcatgatttacttcacagatgcttcatataaaaacagtgtagaagacttcatctgggagtttctagagggcagaccccatggtaggttactgagctacaatccatcgaccaaagagaccaaagtgcttgtccgcgatctctactttgctaatggagtagcaatctctccggatcagaattatgtgatcttctgtgaaactttcatgaaaagatgtaggaagtaccacctgcaaggcgagaagaaagggagcatagagaacttcattgacaacttaccgggcttcccggataatatccgatatgatggggaaggccattactggattgcaatacctacggggacttcagctattttgaataaagcacttgggtaccgttttatccgaaaagggatggcaatcatggagaagtatatagtgagcagaccatataaggagaagaattctggtgtaatggctgtgaatttggaaggggaacctactgcccactattctgatccagatttatcactcattacaagtgggatcaagatcggaaactacctctattgcggttcggttctctatccatacatcatccgccttgatctagaacaacatcctgcacataccactctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

365

Amino Acids

40.76

Weight (kDa)

5.57

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	714
Acc36I	ACCTGC	1 cut(s)	714
Acc65I	GGTACC	1 cut(s)	849
AccB1I	GGYRCC	1 cut(s)	849
AccII	CGCG	2 cut(s)	171, 612
AccIII	TCCGGA	1 cut(s)	646
AciI	CCGC	8 cut(s)	113, 164, 236, 312, 362, 610, 1029, 1057
AclWI	GGATC	4 cut(s)	254, 657, 968, 1010
AcsI	RAATTY	3 cut(s)	440, 919, 940
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	2 cut(s)	701, 851
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	207, 265, 445, 835
AluBI	AGCT	7 cut(s)	136, 155, 352, 412, 448, 573, 827
AluI	AGCT	7 cut(s)	136, 155, 352, 412, 448, 573, 827
Alw26I	GTCTC	2 cut(s)	310, 587
AlwI	GGATC	4 cut(s)	254, 657, 968, 1010
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	3 cut(s)	71, 182, 790
ApeKI	GCWGC	3 cut(s)	116, 275, 412
ApoI	RAATTY	3 cut(s)	440, 919, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
Asp718I	GGTACC	1 cut(s)	849
AspS9I	GGNCC	3 cut(s)	72, 124, 182
AsuC2I	CCSGG	2 cut(s)	756, 764
AvaII	GGWCC	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	833, 866
BanI	GGYRCC	1 cut(s)	849
BbsI	GAAGAC	2 cut(s)	195, 528
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	103, 262, 399
BccI	CCATC	5 cut(s)	172, 470, 589, 776, 865
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BcnI	CCSGG	2 cut(s)	756, 764
BcoDI	GTCTC	2 cut(s)	310, 587
BfaI	CTAG	2 cut(s)	542, 1067
BfuAI	ACCTGC	1 cut(s)	714
BisI	GCNGC	5 cut(s)	114, 117, 164, 276, 413
BlsI	GCNGC	5 cut(s)	115, 118, 165, 277, 414
Bme1390I	CCNGG	2 cut(s)	756, 764
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	72, 124, 182
BmiI	GGNNCC	3 cut(s)	183, 851, 954
BmrFI	CCNGG	2 cut(s)	756, 764
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	2 cut(s)	195, 528
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	2 cut(s)	756, 764
BsaBI	GATNNNNATC	3 cut(s)	61, 875, 1007
BsaI	GGTCTC	2 cut(s)	310, 587
BsaJI	CCNNGG	1 cut(s)	556
BsaWI	WCCGGW	2 cut(s)	106, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	302, 803
Bse8I	GATNNNNATC	3 cut(s)	61, 875, 1007
BseAI	TCCGGA	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	4 cut(s)	236, 876, 1053, 1075
BseJI	GATNNNNATC	3 cut(s)	61, 875, 1007
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMII	CTCAG	3 cut(s)	374, 420, 560
BseNI	ACTGG	2 cut(s)	302, 803
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	103, 262, 399
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	2 cut(s)	171, 612
BshFI	GGCC	3 cut(s)	73, 184, 792
BshNI	GGYRCC	1 cut(s)	849
BsiSI	CCGG	5 cut(s)	107, 309, 647, 755, 764
BslFI	GGGAC	3 cut(s)	228, 390, 832
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	2 cut(s)	310, 587
BsmFI	GGGAC	3 cut(s)	228, 390, 832
BsnI	GGCC	3 cut(s)	73, 184, 792
Bso31I	GGTCTC	2 cut(s)	310, 587
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
Bsp19I	CCATGG	1 cut(s)	556
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	8 cut(s)	113, 164, 236, 312, 362, 610, 1029, 1057
BspANI	GGCC	3 cut(s)	73, 184, 792
BspCNI	CTCAG	3 cut(s)	375, 421, 561
BspEI	TCCGGA	1 cut(s)	646
BspFNI	CGCG	2 cut(s)	171, 612
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	183, 851, 954
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	4 cut(s)	254, 657, 968, 1010
BspT107I	GGYRCC	1 cut(s)	849
BspTNI	GGTCTC	2 cut(s)	310, 587
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	302, 803
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
BssT1I	CCWWGG	1 cut(s)	556
Bst4CI	ACNGT	4 cut(s)	338, 458, 515, 854
Bst6I	CTCTTC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	383, 429, 569
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	4 cut(s)	236, 876, 1053, 1075
BstFNI	CGCG	2 cut(s)	171, 612
BstKTI	GATC	9 cut(s)	59, 249, 616, 652, 666, 976, 1005, 1011, 1066
BstMAI	GTCTC	2 cut(s)	310, 587
BstMBI	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
BstSCI	CCNGG	2 cut(s)	754, 762
BstUI	CGCG	2 cut(s)	171, 612
BstV1I	GCAGC	3 cut(s)	103, 262, 399
BstV2I	GAAGAC	2 cut(s)	195, 528
BsuRI	GGCC	3 cut(s)	73, 184, 792
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	4 cut(s)	236, 876, 1053, 1075
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 520
BtuMI	TCGCGA	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	714
CciI	TCATGA	1 cut(s)	681
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	72, 124, 182
Csp6I	GTAC	2 cut(s)	700, 850
CviAII	CATG	5 cut(s)	69, 481, 557, 682, 880
CviQI	GTAC	2 cut(s)	700, 850
DdeI	CTNAG	3 cut(s)	383, 429, 569
DpnI	GATC	9 cut(s)	58, 248, 615, 651, 665, 975, 1004, 1010, 1065
DpnII	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	2 cut(s)	377, 1046
Eco130I	CCWWGG	1 cut(s)	556
Eco31I	GGTCTC	2 cut(s)	310, 587
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	807
EcoRI	GAATTC	1 cut(s)	919
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	5 cut(s)	72, 484, 560, 685, 883
FaqI	GGGAC	3 cut(s)	228, 390, 832
FatI	CATG	5 cut(s)	68, 480, 556, 681, 879
FauI	CCCGC	1 cut(s)	305
Fnu4HI	GCNGC	5 cut(s)	114, 117, 164, 276, 413
FokI	GGATG	4 cut(s)	243, 883, 1040, 1062
Fsp4HI	GCNGC	5 cut(s)	114, 117, 164, 276, 413
FspBI	CTAG	2 cut(s)	542, 1067
GluI	GCNGC	5 cut(s)	114, 117, 164, 276, 413
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	73, 184, 792
HapII	CCGG	5 cut(s)	107, 309, 647, 755, 764
Hin1II	CATG	5 cut(s)	72, 484, 560, 685, 883
HinfI	GANTC	7 cut(s)	23, 140, 203, 255, 269, 281, 327
HpaII	CCGG	5 cut(s)	107, 309, 647, 755, 764
Hpy188I	TCNGA	6 cut(s)	326, 654, 776, 863, 973, 1013
Hpy188III	TCNNGA	8 cut(s)	170, 213, 542, 647, 682, 977, 1006, 1067
HpyAV	CCTTC	3 cut(s)	39, 782, 941
HpyCH4III	ACNGT	4 cut(s)	338, 458, 515, 854
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	38, 709, 806, 1082
HpyF3I	CTNAG	3 cut(s)	383, 429, 569
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	72, 484, 560, 685, 883
Kpn2I	TCCGGA	1 cut(s)	646
KpnI	GGTACC	1 cut(s)	853
Kzo9I	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
LmnI	GCTCC	3 cut(s)	160, 409, 726
Lsp1109I	GCAGC	3 cut(s)	103, 262, 399
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	542, 1067
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	564
MalI	GATC	9 cut(s)	58, 248, 615, 651, 665, 975, 1004, 1010, 1065
MboI	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
MboII	GAAGA	8 cut(s)	66, 79, 82, 200, 533, 658, 730, 928
MluCI	AATT	4 cut(s)	440, 655, 919, 940
MlyI	GAGTC	6 cut(s)	17, 134, 264, 275, 278, 321
MnlI	CCTC	8 cut(s)	43, 137, 168, 388, 418, 424, 538, 1031
MroI	TCCGGA	1 cut(s)	646
MseI	TTAA	2 cut(s)	77, 303
MslI	CAYNNNNRTG	1 cut(s)	67
MspI	CCGG	5 cut(s)	107, 309, 647, 755, 764
MspR9I	CCNGG	2 cut(s)	756, 764
MvnI	CGCG	2 cut(s)	171, 612
NciI	CCSGG	2 cut(s)	756, 764
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
NlaIII	CATG	5 cut(s)	72, 484, 560, 685, 883
NlaIV	GGNNCC	3 cut(s)	183, 851, 954
NruI	TCGCGA	1 cut(s)	171
PagI	TCATGA	1 cut(s)	681
PaqCI	CACCTGC	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	762
PkrI	GCNGC	5 cut(s)	115, 118, 165, 277, 414
PleI	GAGTC	6 cut(s)	17, 134, 263, 275, 277, 321
PpsI	GAGTC	6 cut(s)	17, 134, 263, 275, 277, 321
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	3 cut(s)	183, 851, 954
PspPI	GGNCC	3 cut(s)	72, 124, 182
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	2 cut(s)	701, 851
RsaNI	GTAC	2 cut(s)	700, 850
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	77, 303
SatI	GCNGC	5 cut(s)	114, 117, 164, 276, 413
Sau3AI	GATC	9 cut(s)	56, 246, 613, 649, 663, 973, 1002, 1008, 1063
Sau96I	GGNCC	3 cut(s)	72, 124, 182
SchI	GAGTC	6 cut(s)	17, 134, 264, 275, 278, 321
ScrFI	CCNGG	2 cut(s)	756, 764
SfaNI	GCATC	1 cut(s)	487
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	440, 655, 919, 940
SsiI	CCGC	8 cut(s)	113, 164, 236, 312, 362, 610, 1029, 1057
SspMI	CTAG	2 cut(s)	542, 1067
StyD4I	CCNGG	2 cut(s)	754, 762
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	4 cut(s)	338, 458, 515, 854
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	147, 584
TasI	AATT	4 cut(s)	440, 655, 919, 940
TauI	GCSGC	2 cut(s)	116, 166
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	77, 303
Tru9I	TTAA	2 cut(s)	77, 303
TscAI	CASTG	2 cut(s)	411, 520
TseI	GCWGC	3 cut(s)	116, 275, 412
TspDTI	ATGAA	5 cut(s)	492, 517, 670, 698, 730
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	411, 520
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	3 cut(s)	440, 919, 940
XbaI	TCTAGA	2 cut(s)	541, 1066
XspI	CTAG	2 cut(s)	542, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.