FvH4_1g10570

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000797
Physical Location & Seq
Reverse (-)
5787631 .. 5793725
6095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10570.t1

Sequence Viewer

Length: 1182 bp
ATGTCCGAGTCAAGCGCCCAAGACTCACTTTCCTCTGCAACCCAAGCCGTTAGAAGATCAACATCTTCATCATGGCCTCTGAACTTTCTCCTCTTCTCCATACTAGTTCCGGTGGCGGTAGCTCTGCTAGTCCTCTACCAGCTCGACCCGTTCGACCCCGCTCCTCTGCCGCTTCATGAGATAAGCCACCGAATCGCGGCTGCGCCAAGGCGTAATGATCAGATGCTCAAAGGGTCGGAGTTTATAGGTGTTGGGGTTCTAGCGGGGCCGGAAGACGTTGCTTATGACTCAAAGTCGGGGGTCATATACACTGGCTGTGCTGACGGGTGGGTCAAGCGAGTCACGTTGAACGAGTCGGTTGCTGACTCGGTGGTGGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGCCATAACGGTGACCTTTTGGTAGCGGACACAGAAAAGGGACTACTGAGAACAAGTGAGGCTGGAGAAGTGGAGCTGCTGACTGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAGATGCTGTAGACGTAGCAAAAGATGGCATGATTTACTTCACAGATGCTTCGTATAAATACAGCTTCCATGACTTCATTTGGGACATTTTGGAGGGCAGACCCCATGGAAGATTACTCAGTTATGATCCAACAACCAAAGAGACGAAAGTGCTAGTCCCCGACCTCTACTTTGCTAATGGAGTTGCAGTCTCTCCGGATCAGAAGTTTGTGATCTTCTGTGAAACTGTCATGAGAAGATGTAAAAAGTACTACCTGCAAGGCGAGAAGAAGGGACACGTAGAGAACTTCATCGACAGCTTGCCGGGCACCCCTGATAATATCCGATATGATGGGGAAGGCCATTACTGGATTGGATTGGCTACGGAGATTACAGTTTCTTGGGATCTAGCACTTAGGTACCCTTTTATTCGAAAATGGCTGGCAATCATGGAGAAGTATACAGCAGGCAAACCACATATGGAGAAAAATTCTGGTGTAATGGCTGTTAATCTGGAAGGGGAACCTATTGACCACTACTCTGATCCAGGGTTATCACTCATTTCAAGTGGGATCAAGATTGGAAATTACCTGTACTGCGGTTCAATTGTATATCCATACATTATCCGCTTCGATCTGGAACATCATCCTGCACAGGCCACTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

394

Amino Acids

43.53

Weight (kDa)

5.25

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 74 - 114 9.8e-08 Strictosidine synthase-like, N-terminal
SGL PF08450 135 - 299 2.7e-13 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 180 - 266 2e-36 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 798
Acc65I GGTACC 1 cut(s) 933
AccB1I GGYRCC 2 cut(s) 842, 933
AccBSI CCGCTC 1 cut(s) 161
AccI GTMKAC 2 cut(s) 546, 974
AccII CGCG 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 9 cut(s) 116, 159, 170, 197, 263, 396, 446, 1113, 1141
AclWI GGATC 5 cut(s) 656, 741, 927, 1052, 1094
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 2 cut(s) 524, 1003
AfaI GTAC 3 cut(s) 785, 935, 1109
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 811
AgsI TTSAA 4 cut(s) 349, 529, 1080, 1119
AhdI GACNNNNNGTC 1 cut(s) 292
AhlI ACTAGT 1 cut(s) 103
AjnI CCWGG 1 cut(s) 1060
AluBI AGCT 6 cut(s) 122, 142, 496, 532, 600, 834
AluI AGCT 6 cut(s) 122, 142, 496, 532, 600, 834
Alw26I GTCTC 3 cut(s) 394, 671, 730
AlwI GGATC 5 cut(s) 656, 741, 927, 1052, 1094
AlwNI CAGNNNCTG 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 5 cut(s) 74, 266, 421, 874, 1170
ApeKI GCWGC 2 cut(s) 200, 496
ApoI RAATTY 2 cut(s) 524, 1003
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
Asp718I GGTACC 1 cut(s) 933
AspLEI GCGC 2 cut(s) 17, 205
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 1 cut(s) 443
AsuII TTCGAA 1 cut(s) 946
BaeGI GKGCMC 1 cut(s) 845
BaeI ACNNNNGTAYC 2 cut(s) 917, 950
BanI GGYRCC 2 cut(s) 842, 933
BbsI GAAGAC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 187, 483
BccI CCATC 2 cut(s) 554, 860
BceAI ACGGC 2 cut(s) 32, 436
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 1 cut(s) 1062
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 3 cut(s) 394, 671, 730
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 5 cut(s) 104, 128, 260, 689, 923
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 798
BisI GCNGC 4 cut(s) 170, 198, 201, 497
BlsI GCNGC 4 cut(s) 171, 199, 202, 498
BmcAI AGTACT 1 cut(s) 785
Bme1390I CCNGG 2 cut(s) 840, 1062
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 4 cut(s) 267, 844, 935, 1038
BmrFI CCNGG 2 cut(s) 840, 1062
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 3 cut(s) 213, 529, 571
BmuI ACTGGG 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 946
BpuMI CCSGG 1 cut(s) 840
BsaAI YACGTR 1 cut(s) 814
BsaBI GATNNNNATC 1 cut(s) 61
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 206, 640, 1061
BsaWI WCCGGW 2 cut(s) 109, 730
BsaXI ACNNNNNCTCC 2 cut(s) 708, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 3 cut(s) 316, 386, 887
Bse8I GATNNNNATC 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 1 cut(s) 1062
BseDI CCNNGG 3 cut(s) 206, 640, 1061
BseGI GGATG 1 cut(s) 1159
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 3 cut(s) 458, 504, 667
BseNI ACTGG 3 cut(s) 316, 386, 887
BseRI GAGGAG 2 cut(s) 80, 153
BseSI GKGCMC 1 cut(s) 845
BseXI GCAGC 2 cut(s) 187, 483
BsgI GTGCAG 1 cut(s) 1149
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 5 cut(s) 76, 268, 423, 876, 1172
BshNI GGYRCC 2 cut(s) 842, 933
BsiSI CCGG 5 cut(s) 110, 269, 393, 731, 839
BslFI GGGAC 4 cut(s) 474, 632, 677, 822
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 3 cut(s) 394, 671, 730
BsmBI CGTCTC 1 cut(s) 671
BsmFI GGGAC 4 cut(s) 474, 632, 677, 822
BsnI GGCC 5 cut(s) 76, 268, 423, 876, 1172
Bso31I GGTCTC 1 cut(s) 394
Bsp119I TTCGAA 1 cut(s) 946
Bsp1286I GDGCHC 1 cut(s) 845
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 9 cut(s) 116, 159, 170, 197, 263, 396, 446, 1113, 1141
BspANI GGCC 5 cut(s) 76, 268, 423, 876, 1172
BspCNI CTCAG 3 cut(s) 459, 505, 666
BspEI TCCGGA 1 cut(s) 730
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 2 cut(s) 175, 765
BspLI GGNNCC 4 cut(s) 267, 844, 935, 1038
BspMI ACCTGC 1 cut(s) 798
BspPI GGATC 5 cut(s) 656, 741, 927, 1052, 1094
BspT104I TTCGAA 1 cut(s) 946
BspT107I GGYRCC 2 cut(s) 842, 933
BspTNI GGTCTC 1 cut(s) 394
BsrBI CCGCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 3 cut(s) 316, 386, 887
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 3 cut(s) 206, 640, 1061
BssMI GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
BssNAI GTATAC 1 cut(s) 975
BssT1I CCWWGG 2 cut(s) 206, 640
Bst1107I GTATAC 1 cut(s) 975
Bst2UI CCWGG 1 cut(s) 1062
Bst4CI ACNGT 3 cut(s) 431, 763, 910
Bst6I CTCTTC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 814
BstBI TTCGAA 1 cut(s) 946
BstC8I GCNNGC 3 cut(s) 836, 957, 982
BstDEI CTNAG 4 cut(s) 467, 513, 653, 929
BstDSI CCRYGG 1 cut(s) 640
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 1 cut(s) 1159
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 205
BstKTI GATC 9 cut(s) 59, 220, 664, 736, 750, 922, 1060, 1089, 1150
BstMAI GTCTC 3 cut(s) 394, 671, 730
BstMBI GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 44, 840
BstNI CCWGG 1 cut(s) 1062
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 838, 1060
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 845
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 187, 483
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
BstZ17I GTATAC 1 cut(s) 975
BsuRI GGCC 5 cut(s) 76, 268, 423, 876, 1172
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 1 cut(s) 1159
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 798
Cac8I GCNNGC 3 cut(s) 836, 957, 982
CaiI CAGNNNCTG 1 cut(s) 542
CciI TCATGA 2 cut(s) 175, 765
CfoI GCGC 2 cut(s) 17, 205
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 784, 934, 1108
CviAII CATG 7 cut(s) 72, 176, 565, 605, 641, 766, 964
CviQI GTAC 3 cut(s) 784, 934, 1108
DdeI CTNAG 4 cut(s) 467, 513, 653, 929
DpnI GATC 9 cut(s) 58, 219, 663, 735, 749, 921, 1059, 1088, 1149
DpnII GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
DrdI GACNNNNNNGTC 1 cut(s) 329
DriI GACNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 206, 640
Eco31I GGTCTC 1 cut(s) 394
Eco91I GGTNACC 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 1060
EcoT14I CCWWGG 2 cut(s) 206, 640
ErhI CCWWGG 2 cut(s) 206, 640
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 7 cut(s) 75, 179, 568, 608, 644, 769, 967
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 4 cut(s) 474, 632, 677, 822
FatI CATG 7 cut(s) 71, 175, 564, 604, 640, 765, 963
FauI CCCGC 3 cut(s) 166, 256, 389
FauNDI CATATG 1 cut(s) 993
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 2 cut(s) 546, 974
Fnu4HI GCNGC 4 cut(s) 170, 198, 201, 497
FokI GGATG 1 cut(s) 1146
Fsp4HI GCNGC 4 cut(s) 170, 198, 201, 497
FspBI CTAG 5 cut(s) 104, 128, 260, 689, 923
GlaI GCGC 2 cut(s) 16, 204
GluI GCNGC 4 cut(s) 170, 198, 201, 497
GsuI CTGGAG 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 5 cut(s) 76, 268, 423, 876, 1172
HapII CCGG 5 cut(s) 110, 269, 393, 731, 839
HhaI GCGC 2 cut(s) 17, 205
Hin1II CATG 7 cut(s) 75, 179, 568, 608, 644, 769, 967
Hin6I GCGC 2 cut(s) 15, 203
HinP1I GCGC 2 cut(s) 15, 203
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 8 cut(s) 8, 23, 192, 287, 339, 353, 365, 411
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 5 cut(s) 110, 269, 393, 731, 839
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 3 cut(s) 388, 547, 975
Hpy188I TCNGA 8 cut(s) 7, 81, 222, 238, 410, 738, 860, 1057
Hpy188III TCNNGA 6 cut(s) 176, 731, 766, 1028, 1090, 1151
Hpy8I GTNNAC 3 cut(s) 388, 547, 975
HpyAV CCTTC 3 cut(s) 799, 866, 1025
HpyCH4III ACNGT 3 cut(s) 431, 763, 910
HpyCH4IV ACGT 4 cut(s) 276, 344, 549, 813
HpyCH4V TGCA 4 cut(s) 38, 722, 793, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 840
HpyF3I CTNAG 4 cut(s) 467, 513, 653, 929
HpySE526I ACGT 4 cut(s) 276, 344, 549, 813
Hsp92II CATG 7 cut(s) 75, 179, 568, 608, 644, 769, 967
HspAI GCGC 2 cut(s) 15, 203
Kpn2I TCCGGA 1 cut(s) 730
KpnI GGTACC 1 cut(s) 937
Ksp22I TGATCA 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
LmnI GCTCC 2 cut(s) 166, 493
Lsp1109I GCAGC 2 cut(s) 187, 483
LweI GCATC 3 cut(s) 213, 529, 571
MaeI CTAG 5 cut(s) 104, 128, 260, 689, 923
MaeII ACGT 4 cut(s) 276, 344, 549, 813
MaeIII GTNAC 2 cut(s) 340, 431
MalI GATC 9 cut(s) 58, 219, 663, 735, 749, 921, 1059, 1088, 1149
MbiI CCGCTC 1 cut(s) 161
MboI GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
MboII GAAGA 8 cut(s) 57, 66, 85, 284, 657, 742, 783, 814
MfeI CAATTG 1 cut(s) 1119
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 1 cut(s) 845
MluCI AATT 4 cut(s) 524, 1003, 1099, 1119
MlyI GAGTC 7 cut(s) 17, 17, 281, 348, 359, 362, 405
MmeI TCCRAC 2 cut(s) 216, 689
MroI TCCGGA 1 cut(s) 730
MseI TTAA 2 cut(s) 387, 1023
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 5 cut(s) 110, 269, 393, 731, 839
MspR9I CCNGG 2 cut(s) 840, 1062
MunI CAATTG 1 cut(s) 1119
MvaI CCWGG 1 cut(s) 1062
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 44, 840
NciI CCSGG 1 cut(s) 840
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 993
NdeII GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
NlaIII CATG 7 cut(s) 75, 179, 568, 608, 644, 769, 967
NlaIV GGNNCC 4 cut(s) 267, 844, 935, 1038
NmuCI GTSAC 2 cut(s) 340, 431
NspV TTCGAA 1 cut(s) 946
PagI TCATGA 2 cut(s) 175, 765
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 4 cut(s) 171, 199, 202, 498
PleI GAGTC 7 cut(s) 16, 17, 281, 347, 359, 361, 405
PpsI GAGTC 7 cut(s) 16, 17, 281, 347, 359, 361, 405
Ppu21I YACGTR 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 1060
PspEI GGTNACC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 1060
PspN4I GGNNCC 4 cut(s) 267, 844, 935, 1038
PspPI GGNCC 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 919
RsaI GTAC 3 cut(s) 785, 935, 1109
RsaNI GTAC 3 cut(s) 784, 934, 1108
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 2 cut(s) 387, 1023
SatI GCNGC 4 cut(s) 170, 198, 201, 497
Sau3AI GATC 9 cut(s) 56, 217, 661, 733, 747, 919, 1057, 1086, 1147
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 785
SchI GAGTC 7 cut(s) 17, 17, 281, 348, 359, 362, 405
ScrFI CCNGG 2 cut(s) 840, 1062
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 3 cut(s) 213, 529, 571
SfcI CTRYAG 1 cut(s) 543
SfuI TTCGAA 1 cut(s) 946
SgrAI CRCCGGYG 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 103
Sse9I AATT 4 cut(s) 524, 1003, 1099, 1119
SsiI CCGC 9 cut(s) 116, 159, 170, 197, 263, 396, 446, 1113, 1141
SspMI CTAG 5 cut(s) 104, 128, 260, 689, 923
StyD4I CCNGG 2 cut(s) 838, 1060
StyI CCWWGG 2 cut(s) 206, 640
TaaI ACNGT 3 cut(s) 431, 763, 910
TaiI ACGT 4 cut(s) 279, 347, 552, 816
TaqI TCGA 5 cut(s) 144, 153, 828, 946, 1146
TasI AATT 4 cut(s) 524, 1003, 1099, 1119
TatI WGTACW 2 cut(s) 783, 1107
TauI GCSGC 2 cut(s) 172, 200
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 2 cut(s) 387, 1023
Tru9I TTAA 2 cut(s) 387, 1023
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 2 cut(s) 340, 431
TseI GCWGC 2 cut(s) 200, 496
Tsp45I GTSAC 2 cut(s) 340, 431
TspDTI ATGAA 4 cut(s) 57, 164, 601, 814
TspGWI ACGGA 1 cut(s) 914
TspRI CASTG 1 cut(s) 316
XapI RAATTY 2 cut(s) 524, 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 884
XmiI GTMKAC 2 cut(s) 546, 974
XspI CTAG 5 cut(s) 104, 128, 260, 689, 923
ZrmI AGTACT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.