Rh3CG338100

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000797
Physical Location & Seq
Forward (+)
37801047 .. 37801491
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG338100.1

Sequence Viewer

Length: 372 bp
ATGCTAACAGATTGTGTAGATGTAGCTAAAGATGGTACGATTTACATCACAGATGATTCATATAAAAACGACTTAAAAGACTTCATCTGGGACTTTCTAGAGGGCAGACCCTATGGTAGGTTACTGAGCTACAATCCATCGACCAAAGAGACCAAAGTGCTTGTCTGCGACCTCTACTGTGCTAATGGAGTAGCACTCTCTTCGGATCAGAATTATGTGATCTTTTGCGAAACTTTCATGAGAAGATGTAGAAAGTACTACCTGCAAAGCAAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCGGACTGCCCGGATAATATACGATATGATGGGGAAGGCCATTACTGGATTGCATTACCTATG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

124

Amino Acids

14.44

Weight (kDa)

4.9

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Str_synth PF03088 5 - 89 1e-30 Strictosidine synthase
SGL PF08450 8 - 122 6.7e-11 SMP-30/Gluconolactonase/LRE-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 213
AfaI GTAC 2 cut(s) 37, 257
AfiI CCNNNNNNNGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 26, 129
AluI AGCT 2 cut(s) 26, 129
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 346
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AsuC2I CCSGG 1 cut(s) 320
BccI CCATC 3 cut(s) 26, 145, 332
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuMI CCSGG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 44
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 359
BshFI GGCC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 311, 320
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 348
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 205, 219
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 359
BssMI GATC 2 cut(s) 205, 219
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 125
BstENI CCTNNNNNAGG 1 cut(s) 115
BstKTI GATC 2 cut(s) 208, 222
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 205, 219
BstSCI CCNGG 1 cut(s) 318
BsuRI GGCC 1 cut(s) 348
BveI ACCTGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 237
Csp6I GTAC 2 cut(s) 36, 256
CviAII CATG 1 cut(s) 238
CviJI RGCY 3 cut(s) 26, 129, 348
CviKI_1 RGCY 3 cut(s) 26, 129, 348
CviQI GTAC 2 cut(s) 36, 256
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 207, 221
DpnII GATC 2 cut(s) 205, 219
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 115
FaeI CATG 1 cut(s) 241
FaiI YATR 9 cut(s) 61, 63, 114, 216, 239, 287, 329, 336, 371
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 237
FspBI CTAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 348
HapII CCGG 2 cut(s) 311, 320
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 311, 320
Hpy188I TCNGA 2 cut(s) 205, 210
Hpy188III TCNNGA 2 cut(s) 98, 238
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 265, 362
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 2 cut(s) 205, 219
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 5 cut(s) 73, 275, 324, 333, 340
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 120
MalI GATC 2 cut(s) 207, 221
MboI GATC 2 cut(s) 205, 219
MboII GAAGA 3 cut(s) 192, 255, 286
MluCI AATT 1 cut(s) 211
MnlI CCTC 2 cut(s) 94, 182
MseI TTAA 1 cut(s) 74
MspI CCGG 2 cut(s) 311, 320
MspR9I CCNGG 1 cut(s) 320
NciI CCSGG 1 cut(s) 320
NdeII GATC 2 cut(s) 205, 219
NlaIII CATG 1 cut(s) 241
PagI TCATGA 1 cut(s) 237
PfeI GAWTC 1 cut(s) 56
RsaI GTAC 2 cut(s) 37, 257
RsaNI GTAC 2 cut(s) 36, 256
SaqAI TTAA 1 cut(s) 74
Sau3AI GATC 2 cut(s) 205, 219
ScaI AGTACT 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 320
SetI ASST 6 cut(s) 28, 122, 131, 174, 264, 370
Sse9I AATT 1 cut(s) 211
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 140
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 48, 73, 226, 286
XagI CCTNNNNNAGG 1 cut(s) 115
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.