Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

5306308 .. 5306967

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAAACTCCTCTTCCTGTATCACGGCCGGATCTAATGGATCTACTCGGGTTTCCTTTGGCCTGGCTGGATCAGCGGCACTGCAGGATGACCATTGGTACATGGTGGGTCGTCTTCTCGGAACAAAAGCTCGCTTTCCTGGTTTTAATGGCACAATCTCTTCCATTTGGAGAATCAAATCGGGGCTGATGATCCAAGATGCAGGTGATCGTTTCCTTTTCCAGTTTGAGCGCGAAGCTGACATAAATCGTGCTCTCCATGGTGGACCATGGTTCTATAGGAATACGATGCTTATGCTCGGTGGTTATGATGGGGTTGGACCGGTGGAGGCAGTTCCACTGTGGAGTCTGGAGACGTGGGTGGCGATGAAGGGTTTGCCGGTAGGTCTGCGCAATAAGGCTGCCCTAACCCTAATCGGCTCAACCATTGGTCAGGTTATTCGTCTTGATCAAACGGCTCTCCGTCGTAGGGAAGAGGAGCAAAGGATCCGGATGATGTTGGATACTCGTCGCCCGATTCGTTCATGGATGATGTTTGAATTTTCGTCCACTGTGGAACTCGAGATCACCCTGATTTACGAGAAAGTGAAGGGTTTATGTAGGGACTGTGGCTTATTTGAACATGATGTTATGGGCTGTGATGGATTCCTAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

219

Amino Acids

24.51

Weight (kDa)

8.75

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	33 - 100	2.8e-09	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	167 - 214	2.8e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc16I	TGCGCA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	194
AccII	CGCG	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	6 cut(s)	40, 49, 79, 187, 481, 494
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgeI	ACCGGT	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	539, 620
AjiI	CACGTC	1 cut(s)	357
AjnI	CCWGG	2 cut(s)	63, 139
AluBI	AGCT	2 cut(s)	131, 239
AluI	AGCT	2 cut(s)	131, 239
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	6 cut(s)	40, 49, 79, 187, 481, 494
Ama87I	CYCGRG	2 cut(s)	48, 560
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	2 cut(s)	27, 61
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	539
AsiGI	ACCGGT	1 cut(s)	322
AspLEI	GCGC	2 cut(s)	234, 393
AspS9I	GGNCC	2 cut(s)	266, 320
AsuHPI	GGTGA	2 cut(s)	218, 559
AvaI	CYCGRG	2 cut(s)	48, 560
AvaII	GGWCC	2 cut(s)	266, 320
BamHI	GGATCC	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	2 cut(s)	305, 635
BceAI	ACGGC	2 cut(s)	42, 471
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	2 cut(s)	65, 141
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	2 cut(s)	83, 277
BfuAI	ACCTGC	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	78, 402
BlsI	GCNGC	2 cut(s)	79, 403
Bme1390I	CCNGG	2 cut(s)	65, 141
Bme18I	GGWCC	2 cut(s)	266, 320
BmeT110I	CYCGRG	2 cut(s)	48, 560
BmgBI	CACGTC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	266, 320
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	65, 141
BmsI	GCATC	2 cut(s)	190, 279
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	259, 269
BsaWI	WCCGGW	2 cut(s)	322, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse118I	RCCGGY	2 cut(s)	322, 379
Bse1I	ACTGG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	65, 141
BseDI	CCNNGG	2 cut(s)	259, 269
BseGI	GGATG	3 cut(s)	94, 498, 534
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	491
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	29, 63
BshTI	ACCGGT	1 cut(s)	322
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	48, 560
BsiSI	CCGG	4 cut(s)	30, 323, 380, 490
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	347
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	29, 63
BsoBI	CYCGRG	2 cut(s)	48, 560
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	489
Bsp143I	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
Bsp19I	CCATGG	2 cut(s)	259, 269
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	29, 63
BspEI	TCCGGA	1 cut(s)	489
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	6 cut(s)	40, 49, 79, 187, 481, 494
BsrFI	RCCGGY	2 cut(s)	322, 379
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	2 cut(s)	322, 379
BssECI	CCNNGG	2 cut(s)	259, 269
BssMI	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
BssT1I	CCWWGG	2 cut(s)	259, 269
Bst2UI	CCWGG	2 cut(s)	65, 141
Bst4CI	ACNGT	3 cut(s)	342, 553, 608
Bst6I	CTCTTC	3 cut(s)	19, 166, 468
BstC8I	GCNNGC	1 cut(s)	133
BstDSI	CCRYGG	2 cut(s)	259, 269
BstF5I	GGATG	3 cut(s)	94, 498, 534
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	234, 393
BstKTI	GATC	8 cut(s)	35, 44, 74, 195, 211, 451, 489, 567
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	65, 141
BstSCI	CCNGG	2 cut(s)	63, 139
BstSFI	CTRYAG	2 cut(s)	83, 277
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	3 cut(s)	32, 41, 486
BstYI	RGATCY	3 cut(s)	32, 41, 486
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	29, 63
BtgI	CCRYGG	2 cut(s)	259, 269
BtgZI	GCGATG	1 cut(s)	380
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	94, 498, 534
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	3 cut(s)	80, 338, 549
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	234, 393
Cfr10I	RCCGGY	2 cut(s)	322, 379
Cfr13I	GGNCC	2 cut(s)	266, 320
Csp6I	GTAC	1 cut(s)	100
CspAI	ACCGGT	1 cut(s)	322
CviAII	CATG	5 cut(s)	103, 260, 270, 525, 623
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	8 cut(s)	34, 43, 73, 194, 210, 450, 488, 566
DpnII	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	3 cut(s)	19, 166, 468
EarI	CTCTTC	3 cut(s)	19, 166, 468
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	259, 269
Eco47I	GGWCC	2 cut(s)	266, 320
Eco52I	CGGCCG	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	48, 560
EcoRII	CCWGG	2 cut(s)	63, 139
EcoT14I	CCWWGG	2 cut(s)	259, 269
ErhI	CCWWGG	2 cut(s)	259, 269
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	5 cut(s)	106, 263, 273, 528, 626
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	5 cut(s)	102, 259, 269, 524, 622
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	78, 402
FokI	GGATG	3 cut(s)	101, 505, 541
Fsp4HI	GCNGC	2 cut(s)	78, 402
FspBI	CTAG	1 cut(s)	650
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	2 cut(s)	233, 392
GluI	GCNGC	2 cut(s)	78, 402
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	29, 63
HapII	CCGG	4 cut(s)	30, 323, 380, 490
HhaI	GCGC	2 cut(s)	234, 393
Hin1II	CATG	5 cut(s)	106, 263, 273, 528, 626
Hin6I	GCGC	2 cut(s)	232, 391
HinP1I	GCGC	2 cut(s)	232, 391
HinfI	GANTC	4 cut(s)	174, 346, 517, 645
HpaII	CCGG	4 cut(s)	30, 323, 380, 490
HphI	GGTGA	2 cut(s)	218, 559
Hpy166II	GTNNAC	2 cut(s)	266, 549
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	4 cut(s)	350, 446, 490, 562
Hpy8I	GTNNAC	2 cut(s)	266, 549
Hpy99I	CGWCG	2 cut(s)	468, 513
HpyAV	CCTTC	2 cut(s)	364, 583
HpyCH4III	ACNGT	3 cut(s)	342, 553, 608
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	85, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	106, 263, 273, 528, 626
HspAI	GCGC	2 cut(s)	232, 391
Kpn2I	TCCGGA	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	190, 279
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	356
MalI	GATC	8 cut(s)	34, 43, 73, 194, 210, 450, 488, 566
MboI	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
MboII	GAAGA	4 cut(s)	6, 107, 153, 485
MflI	RGATCY	3 cut(s)	32, 41, 486
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	298, 480
MnlI	CCTC	3 cut(s)	22, 322, 469
MroI	TCCGGA	1 cut(s)	489
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	4 cut(s)	30, 323, 380, 490
MspR9I	CCNGG	2 cut(s)	65, 141
MvaI	CCWGG	2 cut(s)	65, 141
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	74
NcoI	CCATGG	2 cut(s)	259, 269
NdeII	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
NlaIII	CATG	5 cut(s)	106, 263, 273, 528, 626
NlaIV	GGNNCC	1 cut(s)	488
NsbI	TGCGCA	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	560
PaqCI	CACCTGC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	2 cut(s)	362, 517
PfeI	GAWTC	3 cut(s)	174, 517, 645
PinAI	ACCGGT	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	79, 403
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	63, 139
PspGI	CCWGG	2 cut(s)	63, 139
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	2 cut(s)	266, 320
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	3 cut(s)	32, 41, 486
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	78, 402
Sau3AI	GATC	8 cut(s)	32, 41, 71, 192, 208, 448, 486, 564
Sau96I	GGNCC	2 cut(s)	266, 320
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	65, 141
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	6 cut(s)	133, 208, 241, 359, 388, 438
SfaNI	GCATC	2 cut(s)	190, 279
SfcI	CTRYAG	2 cut(s)	83, 277
Sfr274I	CTCGAG	1 cut(s)	560
SinI	GGWCC	2 cut(s)	266, 320
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	1 cut(s)	539
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	2 cut(s)	63, 139
StyI	CCWWGG	2 cut(s)	259, 269
TaaI	ACNGT	3 cut(s)	342, 553, 608
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	561
TasI	AATT	1 cut(s)	539
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	174, 517, 645
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	87, 345, 556
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	383, 513
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	3 cut(s)	87, 345, 556
VpaK11BI	GGWCC	2 cut(s)	266, 320
XapI	RAATTY	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	560
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.