Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Reverse (-)

6407424 .. 6408382

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATTTATTTCACAGATGCTTCATACAAATACAGCTTGGATGAGTTCATGTTGGACATTTTGGAAGGTAGACCCTACGGTAGATTTCTGAGCTACAATCCGATGACCAAAGAGACCAAAGTGCTCGTTCGCAACCTGTGCTTTGCTAATGGAGTTGCAGTCTCTCAAGATCAAAACTATGTCATCTTCTGCGAAACTGTAATGAGAAGGTGTAGGAAATATTACCTGGAATGCACTAAAAAAGGGGATGTAGAAAACTTTATCGACCATTTACCGGGCATGCCTGATAATATCAGATATGATGGAGAAGGCCATTACTGGATTGCACTGGCCACGGATGTTAAACCATACTGGGATCGATCACTTCGATATCCTTTTATCCGCAAAGTCCTAGCGATCGTGAAGCGGTATGCAGGAGGCAGGCCACATTTGGAGAAGAATGCTGGCCTATTTGTTGTGAATTTGGATGAGTTATTTCTCATTACAAGTGGGATCAAGATTGGAAAGTACCTCTACTGCGGTTCCGTCGTCTATCCCTACATTATCCGCCTCGATCTGGATCAACATCCTGCACATGCCACCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

196

Amino Acids

22.73

Weight (kDa)

8.49

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	4 cut(s)	382, 406, 519, 547
AclWI	GGATC	3 cut(s)	363, 500, 567
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	460
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	274, 556
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	36, 93
AluI	AGCT	2 cut(s)	36, 93
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	107, 166
AlwI	GGATC	3 cut(s)	363, 500, 567
AoxI	GGCC	4 cut(s)	310, 330, 422, 445
ApoI	RAATTY	1 cut(s)	460
AsuC2I	CCSGG	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	107, 166
BfaI	CTAG	1 cut(s)	392
Bme1390I	CCNGG	2 cut(s)	227, 276
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	227, 276
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	358
BsaBI	GATNNNNATC	2 cut(s)	558, 564
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 556
Bse1I	ACTGG	3 cut(s)	323, 333, 356
Bse8I	GATNNNNATC	2 cut(s)	558, 564
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	5 cut(s)	46, 253, 343, 472, 565
BseJI	GATNNNNATC	2 cut(s)	558, 564
BseLI	CCNNNNNNNGG	2 cut(s)	274, 556
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	3 cut(s)	323, 333, 356
BsgI	GTGCAG	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	4 cut(s)	312, 332, 424, 447
BshVI	ATCGAT	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	274, 556
BsmAI	GTCTC	2 cut(s)	107, 166
BsmI	GAATGC	2 cut(s)	236, 445
BsnI	GGCC	4 cut(s)	312, 332, 424, 447
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
BspACI	CCGC	4 cut(s)	382, 406, 519, 547
BspANI	GGCC	4 cut(s)	312, 332, 424, 447
BspCNI	CTCAG	1 cut(s)	81
BspDI	ATCGAT	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	3 cut(s)	363, 500, 567
BspTNI	GGTCTC	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	323, 333, 356
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	80, 199
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	281, 422, 445
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	46, 253, 343, 472, 565
BstKTI	GATC	7 cut(s)	172, 358, 362, 399, 495, 556, 562
BstMAI	GTCTC	2 cut(s)	107, 166
BstMBI	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	2 cut(s)	283, 578
BstSCI	CCNGG	2 cut(s)	225, 274
Bsu15I	ATCGAT	1 cut(s)	358
BsuRI	GGCC	4 cut(s)	312, 332, 424, 447
BsuTUI	ATCGAT	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	5 cut(s)	46, 253, 343, 472, 565
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	281, 422, 445
ClaI	ATCGAT	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	4 cut(s)	49, 280, 575, 585
CviJI	RGCY	6 cut(s)	36, 93, 312, 332, 424, 447
CviKI_1	RGCY	6 cut(s)	36, 93, 312, 332, 424, 447
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	7 cut(s)	171, 357, 361, 398, 494, 555, 561
DpnII	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
EaeI	YGGCCR	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	371
FaeI	CATG	4 cut(s)	52, 283, 578, 588
FaiI	YATR	9 cut(s)	25, 50, 180, 281, 300, 349, 411, 576, 586
FatI	CATG	4 cut(s)	48, 279, 574, 584
FblI	GTMKAC	1 cut(s)	70
FokI	GGATG	5 cut(s)	53, 260, 350, 479, 552
FspBI	CTAG	1 cut(s)	392
HaeIII	GGCC	4 cut(s)	312, 332, 424, 447
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	4 cut(s)	52, 283, 578, 588
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	90, 102, 296
Hpy188III	TCNNGA	4 cut(s)	167, 400, 496, 557
Hpy8I	GTNNAC	1 cut(s)	71
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	3 cut(s)	59, 201, 302
HpyCH4III	ACNGT	2 cut(s)	80, 199
HpyCH4V	TGCA	5 cut(s)	158, 234, 326, 413, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	52, 283, 578, 588
Kzo9I	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	392
MalI	GATC	7 cut(s)	171, 357, 361, 398, 494, 555, 561
MboI	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
MboII	GAAGA	2 cut(s)	178, 448
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	1 cut(s)	460
MluNI	TGGCCA	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	410, 521, 560
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	332
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	227, 276
Mva1269I	GAATGC	2 cut(s)	236, 445
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
NlaIII	CATG	4 cut(s)	52, 283, 578, 588
NlaIV	GGNNCC	1 cut(s)	523
NspI	RCATGY	2 cut(s)	283, 578
PaeI	GCATGC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PctI	GAATGC	2 cut(s)	236, 445
Ple19I	CGATCG	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	523
PvuI	CGATCG	1 cut(s)	399
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	7 cut(s)	169, 355, 359, 396, 492, 553, 559
ScrFI	CCNGG	2 cut(s)	227, 276
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	7 cut(s)	38, 70, 95, 138, 212, 228, 513
SfaNI	GCATC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	4 cut(s)	382, 406, 519, 547
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	225, 274
TaaI	ACNGT	2 cut(s)	80, 199
TaqI	TCGA	4 cut(s)	264, 358, 367, 552
TasI	AATT	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	12, 37
TspGWI	ACGGA	2 cut(s)	350, 514
TspRI	CASTG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	2 cut(s)	283, 578
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.