RLG00000016731

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000797
Physical Location & Seq
Reverse (-)
9494327 .. 9496174
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016731

Sequence Viewer

Length: 951 bp
ATGCTCAAAGGGTCGGAGTTTTTGGGTGTTGGGGCTTTAGTGGGGCCAGAAGATGTTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGAGGATCAAGCGAGTCAAGTTGAACGAGTCGGCTGCTGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGAAGACCATTCGGACTCGCACACGGTCATAACGGAGAGCTGTTGGTGGCGGACGGGGAAAGGGGACTACTGAGAATAGATGAGGATAGAGCAGTGGAGCTGCTGACAGATGAGGCTGAGTGTGTAAAATTCAAAATAACAAATTGTGTAGATGTAGCGAAAGATGGCATGATTTACTTCACAGATGCTTCATATAAAAACAGCGTAGCAGACTTCGTCTGGGAGTTTCTAGAGGGCAGACCCCATGGTAGGTTACTGAGCTACAATCCATCGACCAAAGAGACCAAAGTGCTTGTCCGCGATCTCTACTTTGCTAATGGAGTAGCAATCTCTCCGGATCATGTGGTAGCAATCTCTCCGGAGAAAAGATGTAGAAAGTACCACCTGCAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCGGGCCCCCCGGATAATATCCGATATGATGGGGAAGGCCATTACTGGATTGCAGTACCTACGGGGACTTCAGCTATTTTGAATAAAGCACTTCGGTACCGTTTTATCCGAAAAGGGATGGCAATCGTGGAGAAGTATAGAGTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTAATGGCTGTGAATTTGGAAGGGGAACCTACTGCCCACTATTCTGATCCAGATTTATCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTATTGCGGTTCGGTTCTCTATCCATATATCATCCGCCTTGATCTAGAACAACATCCTGCACATACCACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

317

Amino Acids

35.05

Weight (kDa)

6.16

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 2 - 40 5e-08 Strictosidine synthase-like, N-terminal
SGL PF08450 24 - 225 5.3e-13 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 106 - 189 2.4e-23 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 567
Acc36I ACCTGC 1 cut(s) 567
Acc65I GGTACC 1 cut(s) 702
AccB1I GGYRCC 1 cut(s) 702
AccII CGCG 1 cut(s) 474
AccIII TCCGGA 2 cut(s) 508, 532
AciI CCGC 6 cut(s) 98, 174, 224, 472, 882, 910
AclWI GGATC 4 cut(s) 116, 519, 821, 863
AcsI RAATTY 3 cut(s) 302, 772, 793
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 3 cut(s) 554, 663, 704
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 4 cut(s) 69, 127, 307, 688
AluBI AGCT 4 cut(s) 214, 274, 435, 680
AluI AGCT 4 cut(s) 214, 274, 435, 680
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 4 cut(s) 116, 519, 821, 863
Aor13HI TCCGGA 2 cut(s) 508, 532
AoxI GGCC 3 cut(s) 44, 610, 643
ApaI GGGCCC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 137, 274
ApoI RAATTY 3 cut(s) 302, 772, 793
ArsI GACNNNNNNTTYG 2 cut(s) 453, 485
Asp718I GGTACC 1 cut(s) 702
AspS9I GGNCC 3 cut(s) 44, 610, 611
AsuC2I CCSGG 2 cut(s) 609, 617
BaeGI GKGCMC 1 cut(s) 614
BaeI ACNNNNGTAYC 2 cut(s) 686, 719
BanI GGYRCC 1 cut(s) 702
BanII GRGCYC 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 124, 261
BccI CCATC 4 cut(s) 332, 451, 629, 718
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BcnI CCSGG 2 cut(s) 609, 617
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 2 cut(s) 404, 920
BfuAI ACCTGC 1 cut(s) 567
BisI GCNGC 2 cut(s) 138, 275
BlsI GCNGC 2 cut(s) 139, 276
Bme1390I CCNGG 2 cut(s) 609, 617
BmgT120I GGNCC 3 cut(s) 44, 610, 611
BmiI GGNNCC 5 cut(s) 45, 612, 613, 704, 807
BmrFI CCNGG 2 cut(s) 609, 617
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 184
BpuMI CCSGG 2 cut(s) 609, 617
BsaBI GATNNNNATC 2 cut(s) 728, 860
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 418, 615
BsaWI WCCGGW 2 cut(s) 508, 532
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 164, 656
Bse8I GATNNNNATC 2 cut(s) 728, 860
BseAI TCCGGA 2 cut(s) 508, 532
BseDI CCNNGG 2 cut(s) 418, 615
BseGI GGATG 4 cut(s) 98, 729, 906, 928
BseJI GATNNNNATC 2 cut(s) 728, 860
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 236, 282, 422
BseNI ACTGG 2 cut(s) 164, 656
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 2 cut(s) 124, 261
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 3 cut(s) 46, 612, 645
BshNI GGYRCC 1 cut(s) 702
BsiSI CCGG 5 cut(s) 171, 509, 533, 608, 617
BslFI GGGAC 3 cut(s) 90, 252, 685
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 3 cut(s) 90, 252, 685
BsnI GGCC 3 cut(s) 46, 612, 645
Bso31I GGTCTC 1 cut(s) 449
Bsp120I GGGCCC 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 614
Bsp13I TCCGGA 2 cut(s) 508, 532
Bsp143I GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 6 cut(s) 98, 174, 224, 472, 882, 910
BspANI GGCC 3 cut(s) 46, 612, 645
BspCNI CTCAG 3 cut(s) 237, 283, 423
BspEI TCCGGA 2 cut(s) 508, 532
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 5 cut(s) 45, 612, 613, 704, 807
BspMI ACCTGC 1 cut(s) 567
BspPI GGATC 4 cut(s) 116, 519, 821, 863
BspT107I GGYRCC 1 cut(s) 702
BspTNI GGTCTC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 2 cut(s) 164, 656
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 418, 615
BssMI GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
BssT1I CCWWGG 1 cut(s) 418
Bst4CI ACNGT 2 cut(s) 200, 707
BstDEI CTNAG 3 cut(s) 245, 291, 431
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 4 cut(s) 98, 729, 906, 928
BstFNI CGCG 1 cut(s) 474
BstKTI GATC 7 cut(s) 111, 478, 514, 829, 858, 864, 919
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
BstSCI CCNGG 2 cut(s) 607, 615
BstSLI GKGCMC 1 cut(s) 614
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 124, 261
BstV2I GAAGAC 1 cut(s) 184
BsuRI GGCC 3 cut(s) 46, 612, 645
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 4 cut(s) 98, 729, 906, 928
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 567
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 44, 610, 611
Csp6I GTAC 3 cut(s) 553, 662, 703
CviAII CATG 3 cut(s) 343, 419, 515
CviQI GTAC 3 cut(s) 553, 662, 703
DdeI CTNAG 3 cut(s) 245, 291, 431
DpnI GATC 7 cut(s) 110, 477, 513, 828, 857, 863, 918
DpnII GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
EciI GGCGGA 3 cut(s) 189, 239, 899
Eco130I CCWWGG 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 660
EcoO109I RGGNCCY 1 cut(s) 611
EcoRI GAATTC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 3 cut(s) 346, 422, 518
FaqI GGGAC 3 cut(s) 90, 252, 685
FatI CATG 3 cut(s) 342, 418, 514
Fnu4HI GCNGC 2 cut(s) 138, 275
FokI GGATG 4 cut(s) 105, 736, 893, 915
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 2 cut(s) 138, 275
FspBI CTAG 2 cut(s) 404, 920
GluI GCNGC 2 cut(s) 138, 275
HaeIII GGCC 3 cut(s) 46, 612, 645
HapII CCGG 5 cut(s) 171, 509, 533, 608, 617
Hin1II CATG 3 cut(s) 346, 422, 518
HinfI GANTC 6 cut(s) 65, 78, 117, 131, 143, 189
HpaII CCGG 5 cut(s) 171, 509, 533, 608, 617
Hpy188I TCNGA 6 cut(s) 16, 188, 629, 716, 826, 866
Hpy188III TCNNGA 7 cut(s) 75, 404, 509, 533, 830, 859, 920
HpyAV CCTTC 2 cut(s) 635, 794
HpyCH4III ACNGT 2 cut(s) 200, 707
HpyCH4V TGCA 3 cut(s) 562, 659, 935
HpyF3I CTNAG 3 cut(s) 245, 291, 431
Hsp92II CATG 3 cut(s) 346, 422, 518
Kpn2I TCCGGA 2 cut(s) 508, 532
KpnI GGTACC 1 cut(s) 706
Kzo9I GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
LmnI GCTCC 2 cut(s) 271, 579
Lsp1109I GCAGC 2 cut(s) 124, 261
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 404, 920
MaeIII GTNAC 1 cut(s) 426
MalI GATC 7 cut(s) 110, 477, 513, 828, 857, 863, 918
MboI GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
MboII GAAGA 4 cut(s) 62, 189, 583, 781
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 4 cut(s) 302, 316, 772, 793
MlyI GAGTC 5 cut(s) 72, 126, 137, 140, 183
MnlI CCTC 5 cut(s) 99, 250, 280, 400, 884
MroI TCCGGA 2 cut(s) 508, 532
MseI TTAA 1 cut(s) 165
MspI CCGG 5 cut(s) 171, 509, 533, 608, 617
MspR9I CCNGG 2 cut(s) 609, 617
MvnI CGCG 1 cut(s) 474
NciI CCSGG 2 cut(s) 609, 617
NcoI CCATGG 1 cut(s) 418
NdeII GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
NlaIII CATG 3 cut(s) 346, 422, 518
NlaIV GGNNCC 5 cut(s) 45, 612, 613, 704, 807
PaqCI CACCTGC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 389
PkrI GCNGC 2 cut(s) 139, 276
PleI GAGTC 5 cut(s) 72, 125, 137, 139, 183
PpsI GAGTC 5 cut(s) 72, 125, 137, 139, 183
PspN4I GGNNCC 5 cut(s) 45, 612, 613, 704, 807
PspOMI GGGCCC 1 cut(s) 610
PspPI GGNCC 3 cut(s) 44, 610, 611
PsyI GACNNNGTC 1 cut(s) 389
RsaI GTAC 3 cut(s) 554, 663, 704
RsaNI GTAC 3 cut(s) 553, 662, 703
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 138, 275
Sau3AI GATC 7 cut(s) 108, 475, 511, 826, 855, 861, 916
Sau96I GGNCC 3 cut(s) 44, 610, 611
SchI GAGTC 5 cut(s) 72, 126, 137, 140, 183
ScrFI CCNGG 2 cut(s) 609, 617
SduI GDGCHC 1 cut(s) 614
SetI ASST 9 cut(s) 216, 276, 428, 437, 561, 667, 682, 811, 876
SfaNI GCATC 1 cut(s) 349
Sse9I AATT 4 cut(s) 302, 316, 772, 793
SsiI CCGC 6 cut(s) 98, 174, 224, 472, 882, 910
SspMI CTAG 2 cut(s) 404, 920
StyD4I CCNGG 2 cut(s) 607, 615
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 200, 707
TaqI TCGA 1 cut(s) 446
TasI AATT 4 cut(s) 302, 316, 772, 793
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 273
TseI GCWGC 2 cut(s) 137, 274
TspDTI ATGAA 2 cut(s) 354, 583
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 273
Tth111I GACNNNGTC 1 cut(s) 389
XapI RAATTY 3 cut(s) 302, 772, 793
XbaI TCTAGA 2 cut(s) 403, 919
XspI CTAG 2 cut(s) 404, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.