FvH4_1g10572

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000797
Physical Location & Seq
Reverse (-)
5799253 .. 5801523
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10572.t1

Sequence Viewer

Length: 1173 bp
ATGCCCAAGTCAAGCAACCATGGCTCACCTTCCTCTGCAACTCAAACCACCAAAACGTCATCATCATGGCCCTTAAACATTCTCTTCTTCACCGTACTGGTTCCTGTGGCAGCGGCTATACTCCTCTACCAGCTCGACTCGTTCGACCCCGCTCCTTACCCGCTTCACGAGCTGAGCCACCTAGTCACTTCTGCTCCGAGGCGTAATGCTCAGATGCTCAAAGGGTCGGAGTTTCTGGGGGTCGGGGCATTAGAGGGACCGGAAGACGTTGCTTATGATTCGAAGTCGGGGGTGATATACACGGGATGTGCGGACGGGTGGATCAAGCGGGTCAAGTTGAACGAGTCGGCTGCTGACTCGGTGGTGGAGAACTGGGTTAACACCGGCGGGAGACCATTTGGACTCGCCCATGAACACGGCGGAAAGCTTCTGGTGGCTGATGGGGAAAAGGGACTACTGAGAATCGATGAGAATGGAGCAGTGGAGCTGCTGACAGACGAGTCAGAGGGTGTAAAATTCAAGCTAACAGATTGTGTAGATGTAGCCAAAGATGGTATGATTTACTTCACAGATGCTTCATATAAACACCGCGCAGAAAACACCTATTGGGATTATCTAGAGGGCAGACCCCATGGTAGGTTATTGAGCTACAATCCATTTACCAAAGAGACCAAAGTGCTCGTCCACGACCTCTACTTTGCTAATGGAGTAGCAATCTCTCCAGATCAGAATTACTTGATCTTCTGCGAAACTTTGATGGTTAGATGTAGGAAGTATTACCTGCAAGGTGAGAAGAAAGGAAGCATAGAGAACTTCATTGACAACTTGCCGGGCTCTCCGGATAACATACGATATGATGGGGAAGGACATTACTGGATCGCTCTAGCTATGGGGACTTCATCTATTACCAAGTTAACATTTAGGTACCCGTTTGTTCGAAAAGTGCTGGCAATAATGGAGAAGTATAAACTGAGCAGTCCATATAAGGAGAAGAATTCCGGTGTAATCGCTGTGAATTTGGACGGAGAACCTACTGCTCACTATTCTGATCCAGCTTTGTCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTACTGCGGTTCTGTTCTGTATCCGTACATTATCCGGCTTGATATTGAAGAACACCCTGCTCATATCACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

391

Amino Acids

43.24

Weight (kDa)

5.86

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 71 - 111 2.5e-08 Strictosidine synthase-like, N-terminal
SGL PF08450 127 - 298 1.8e-14 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 178 - 263 2.4e-30 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 789
Acc65I GGTACC 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 924
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 591
AccIII TCCGGA 1 cut(s) 838
AciI CCGC 9 cut(s) 113, 150, 161, 311, 328, 387, 420, 589, 1104
AclWI GGATC 4 cut(s) 329, 884, 1043, 1085
AcsI RAATTY 3 cut(s) 515, 994, 1015
AfaI GTAC 3 cut(s) 96, 926, 1124
AfiI CCNNNNNNNGG 1 cut(s) 636
AgsI TTSAA 3 cut(s) 340, 520, 1145
AluBI AGCT 8 cut(s) 133, 172, 427, 487, 523, 648, 887, 1055
AluI AGCT 8 cut(s) 133, 172, 427, 487, 523, 648, 887, 1055
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 2 cut(s) 385, 662
AlwI GGATC 4 cut(s) 329, 884, 1043, 1085
Aor13HI TCCGGA 1 cut(s) 838
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 110, 350, 487
ApoI RAATTY 3 cut(s) 515, 994, 1015
ArsI GACNNNNNNTTYG 4 cut(s) 666, 680, 698, 712
Asp718I GGTACC 1 cut(s) 924
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 2 cut(s) 69, 257
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 4 cut(s) 18, 82, 304, 800
AsuII TTCGAA 2 cut(s) 281, 937
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 1 cut(s) 836
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 3 cut(s) 122, 337, 474
BccI CCATC 4 cut(s) 434, 545, 751, 851
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciVI GTATCC 1 cut(s) 1128
BcnI CCSGG 1 cut(s) 831
BcoDI GTCTC 2 cut(s) 385, 662
BfaI CTAG 3 cut(s) 182, 617, 884
BfuAI ACCTGC 1 cut(s) 789
BfuI GTATCC 1 cut(s) 1128
BisI GCNGC 4 cut(s) 111, 114, 351, 488
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 4 cut(s) 112, 115, 352, 489
Bme1390I CCNGG 1 cut(s) 831
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 69, 257
BmiI GGNNCC 3 cut(s) 102, 258, 926
BmrFI CCNGG 1 cut(s) 831
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 2 cut(s) 204, 562
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 705
Bpu1102I GCTNAGC 1 cut(s) 173
Bpu14I TTCGAA 2 cut(s) 281, 937
BpuMI CCSGG 1 cut(s) 831
Bsa29I ATCGAT 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 1082
BsaI GGTCTC 2 cut(s) 385, 662
BsaJI CCNNGG 3 cut(s) 19, 197, 631
BsaWI WCCGGW 3 cut(s) 259, 838, 998
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 102, 377, 878
Bse8I GATNNNNATC 1 cut(s) 1082
BseAI TCCGGA 1 cut(s) 838
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 19, 197, 631
BseGI GGATG 1 cut(s) 311
BseJI GATNNNNATC 1 cut(s) 1082
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMII CTCAG 4 cut(s) 164, 224, 449, 962
BseNI ACTGG 3 cut(s) 102, 377, 878
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 122, 337, 474
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 681
BsiSI CCGG 6 cut(s) 260, 384, 830, 839, 999, 1132
BslFI GGGAC 3 cut(s) 270, 465, 907
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 2 cut(s) 385, 662
BsmFI GGGAC 3 cut(s) 270, 465, 907
BsnI GGCC 1 cut(s) 70
Bso31I GGTCTC 2 cut(s) 385, 662
Bsp119I TTCGAA 2 cut(s) 281, 937
Bsp1286I GDGCHC 2 cut(s) 681, 836
Bsp13I TCCGGA 1 cut(s) 838
Bsp143I GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
Bsp1720I GCTNAGC 1 cut(s) 173
Bsp19I CCATGG 2 cut(s) 19, 631
BspACI CCGC 9 cut(s) 113, 150, 161, 311, 328, 387, 420, 589, 1104
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 4 cut(s) 165, 223, 450, 963
BspDI ATCGAT 1 cut(s) 465
BspEI TCCGGA 1 cut(s) 838
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 3 cut(s) 102, 258, 926
BspMI ACCTGC 1 cut(s) 789
BspPI GGATC 4 cut(s) 329, 884, 1043, 1085
BspT104I TTCGAA 2 cut(s) 281, 937
BspT107I GGYRCC 1 cut(s) 924
BspTNI GGTCTC 2 cut(s) 385, 662
BsrBI CCGCTC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 3 cut(s) 102, 377, 878
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 19, 197, 631
BssMI GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 19, 631
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 89
BstBI TTCGAA 2 cut(s) 281, 937
BstC8I GCNNGC 1 cut(s) 948
BstDEI CTNAG 4 cut(s) 173, 210, 458, 971
BstDSI CCRYGG 2 cut(s) 19, 631
BstF5I GGATG 1 cut(s) 311
BstFNI CGCG 1 cut(s) 591
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 7 cut(s) 324, 727, 741, 879, 1051, 1080, 1086
BstMAI GTCTC 2 cut(s) 385, 662
BstMBI GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
BstMWI GCNNNNNNNGC 2 cut(s) 21, 169
BstSCI CCNGG 1 cut(s) 829
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 3 cut(s) 122, 337, 474
BstV2I GAAGAC 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 465
BsuI GTATCC 1 cut(s) 1128
BsuRI GGCC 1 cut(s) 70
BsuTUI ATCGAT 1 cut(s) 465
BtgI CCRYGG 2 cut(s) 19, 631
BtsCI GGATG 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
BveI ACCTGC 1 cut(s) 789
Cac8I GCNNGC 1 cut(s) 948
CfoI GCGC 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 2 cut(s) 69, 257
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 3 cut(s) 95, 925, 1123
CviAII CATG 5 cut(s) 20, 66, 410, 632, 1170
CviQI GTAC 3 cut(s) 95, 925, 1123
DdeI CTNAG 4 cut(s) 173, 210, 458, 971
DpnI GATC 7 cut(s) 323, 726, 740, 878, 1050, 1079, 1085
DpnII GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
DrdI GACNNNNNNGTC 1 cut(s) 499
DseDI GACNNNNNNGTC 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 2 cut(s) 19, 631
Eco24I GRGCYC 1 cut(s) 836
Eco31I GGTCTC 2 cut(s) 385, 662
Eco47I GGWCC 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 994
EcoT14I CCWWGG 2 cut(s) 19, 631
EcoT38I GRGCYC 1 cut(s) 836
ErhI CCWWGG 2 cut(s) 19, 631
FaeI CATG 5 cut(s) 23, 69, 413, 635, 1173
FaqI GGGAC 3 cut(s) 270, 465, 907
FatI CATG 5 cut(s) 19, 65, 409, 631, 1169
FauI CCCGC 4 cut(s) 157, 168, 321, 380
Fnu4HI GCNGC 4 cut(s) 111, 114, 351, 488
FokI GGATG 1 cut(s) 318
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 4 cut(s) 111, 114, 351, 488
FspBI CTAG 3 cut(s) 182, 617, 884
GlaI GCGC 1 cut(s) 592
GluI GCNGC 4 cut(s) 111, 114, 351, 488
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 1 cut(s) 70
HapII CCGG 6 cut(s) 260, 384, 830, 839, 999, 1132
HhaI GCGC 1 cut(s) 593
Hin1II CATG 5 cut(s) 23, 69, 413, 635, 1173
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HincII GTYRAC 2 cut(s) 379, 915
HindII GTYRAC 2 cut(s) 379, 915
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 7 cut(s) 137, 278, 344, 356, 402, 462, 500
HpaI GTTAAC 2 cut(s) 379, 915
HpaII CCGG 6 cut(s) 260, 384, 830, 839, 999, 1132
HphI GGTGA 4 cut(s) 18, 82, 304, 800
Hpy166II GTNNAC 3 cut(s) 379, 685, 915
Hpy188I TCNGA 7 cut(s) 198, 213, 229, 505, 729, 1048, 1088
Hpy188III TCNNGA 5 cut(s) 167, 617, 722, 839, 1081
Hpy8I GTNNAC 3 cut(s) 379, 685, 915
HpyAV CCTTC 2 cut(s) 39, 857
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 2 cut(s) 56, 267
HpyCH4V TGCA 2 cut(s) 38, 784
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 169
HpyF3I CTNAG 4 cut(s) 173, 210, 458, 971
HpySE526I ACGT 2 cut(s) 56, 267
Hsp92II CATG 5 cut(s) 23, 69, 413, 635, 1173
HspAI GCGC 1 cut(s) 591
Kpn2I TCCGGA 1 cut(s) 838
KpnI GGTACC 1 cut(s) 928
KspAI GTTAAC 2 cut(s) 379, 915
Kzo9I GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
LmnI GCTCC 4 cut(s) 157, 199, 476, 484
Lsp1109I GCAGC 3 cut(s) 122, 337, 474
LweI GCATC 2 cut(s) 204, 562
MaeI CTAG 3 cut(s) 182, 617, 884
MaeII ACGT 2 cut(s) 56, 267
MaeIII GTNAC 2 cut(s) 184, 1059
MalI GATC 7 cut(s) 323, 726, 740, 878, 1050, 1079, 1085
MbiI CCGCTC 1 cut(s) 152
MboI GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
MboII GAAGA 7 cut(s) 76, 79, 275, 733, 805, 1003, 1157
MhlI GDGCHC 2 cut(s) 681, 836
MluCI AATT 4 cut(s) 515, 730, 994, 1015
MlyI GAGTC 5 cut(s) 131, 350, 353, 396, 509
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 8 cut(s) 43, 134, 192, 247, 499, 613, 701, 1106
MroI TCCGGA 1 cut(s) 838
MseI TTAA 3 cut(s) 74, 378, 914
MslI CAYNNNNRTG 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 6 cut(s) 260, 384, 830, 839, 999, 1132
MspR9I CCNGG 1 cut(s) 831
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 21, 169
NciI CCSGG 1 cut(s) 831
NcoI CCATGG 2 cut(s) 19, 631
NdeII GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
NlaIII CATG 5 cut(s) 23, 69, 413, 635, 1173
NlaIV GGNNCC 3 cut(s) 102, 258, 926
NmuCI GTSAC 2 cut(s) 184, 1059
NspV TTCGAA 2 cut(s) 281, 937
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 278, 462
PkrI GCNGC 4 cut(s) 112, 115, 352, 489
PleI GAGTC 5 cut(s) 131, 350, 352, 396, 508
PpsI GAGTC 5 cut(s) 131, 350, 352, 396, 508
PspN4I GGNNCC 3 cut(s) 102, 258, 926
PspPI GGNCC 2 cut(s) 69, 257
RsaI GTAC 3 cut(s) 96, 926, 1124
RsaNI GTAC 3 cut(s) 95, 925, 1123
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 3 cut(s) 74, 378, 914
SatI GCNGC 4 cut(s) 111, 114, 351, 488
Sau3AI GATC 7 cut(s) 321, 724, 738, 876, 1048, 1077, 1083
Sau96I GGNCC 2 cut(s) 69, 257
SchI GAGTC 5 cut(s) 131, 350, 353, 396, 509
ScrFI CCNGG 1 cut(s) 831
SduI GDGCHC 2 cut(s) 681, 836
SfaNI GCATC 2 cut(s) 204, 562
SfuI TTCGAA 2 cut(s) 281, 937
SgrAI CRCCGGYG 1 cut(s) 383
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 4 cut(s) 515, 730, 994, 1015
SsiI CCGC 9 cut(s) 113, 150, 161, 311, 328, 387, 420, 589, 1104
SspMI CTAG 3 cut(s) 182, 617, 884
StyD4I CCNGG 1 cut(s) 829
StyI CCWWGG 2 cut(s) 19, 631
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 2 cut(s) 59, 270
TaqI TCGA 5 cut(s) 135, 144, 281, 465, 937
TasI AATT 4 cut(s) 515, 730, 994, 1015
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 278, 462
Tru1I TTAA 3 cut(s) 74, 378, 914
Tru9I TTAA 3 cut(s) 74, 378, 914
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 2 cut(s) 184, 1059
TseI GCWGC 3 cut(s) 110, 350, 487
Tsp45I GTSAC 2 cut(s) 184, 1059
TspDTI ATGAA 4 cut(s) 426, 567, 805, 888
TspGWI ACGGA 2 cut(s) 1038, 1110
TspRI CASTG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 3 cut(s) 515, 994, 1015
XbaI TCTAGA 1 cut(s) 616
XspI CTAG 3 cut(s) 182, 617, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.