Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

39291011 .. 39291659

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45539

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACCCATGTGTCGATGCTGTGTCCAAGCACAAACCATCCGTTTAACTTTCTGTTCCGAGTTGCCTCCATAACTCGCCACCCAATCCACAAGTCAAGCAACCAAGACTCACCTTCCTCTGCAACTCAATCCACCAGAAGATCGTTATCGATCATCATGGCCGTCTTAAACACTCTCTTTTTCTCAATACTGGTTCCGGTGGCGGCGGCTGTGCTCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTGAGTGAGCAAGTCGCGGCTGCCCCGAGGCGTAATGGTCACATGCTCAAAGGGTCGGAGTTTTTGGGTGTTGGGACTTTAGCAGGGCCAGAAGACGTTGCTTATGATTCCAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGCTGAACGAGTCCGCTGATGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCACTCGGACTCGCTCACGAACATGGCGGAAAGCTTTTGGTAGCTGACGCGGAAAAGGTCAGCGTCACTTACTGTCCTCAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

190

Amino Acids

20.53

Weight (kDa)

6.49

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	104 - 142	3.3e-08	Strictosidine synthase-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccII	CGCG	2 cut(s)	281, 536
AciI	CCGC	9 cut(s)	203, 206, 254, 281, 404, 441, 480, 513, 536
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	159
AluBI	AGCT	4 cut(s)	226, 430, 520, 530
AluI	AGCT	4 cut(s)	226, 430, 520, 530
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	2 cut(s)	159, 350
ApeKI	GCWGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	289
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	478
BisI	GCNGC	5 cut(s)	204, 207, 254, 282, 285
BlsI	GCNGC	5 cut(s)	205, 208, 255, 283, 286
Bme1390I	CCNGG	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	195, 246
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	475
BmsI	GCATC	1 cut(s)	6
BmuI	ACTGGG	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	195, 470
Bse8I	GATNNNNATC	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	37, 404
BseJI	GATNNNNATC	1 cut(s)	145
BseNI	ACTGG	2 cut(s)	195, 470
BseRI	GAGGAG	2 cut(s)	206, 237
BseXI	GCAGC	1 cut(s)	271
Bsh1236I	CGCG	2 cut(s)	281, 536
BshFI	GGCC	2 cut(s)	161, 352
BshVI	ATCGAT	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	197, 242, 477
BslFI	GGGAC	2 cut(s)	352, 396
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	2 cut(s)	352, 396
BsnI	GGCC	2 cut(s)	161, 352
Bso31I	GGTCTC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	140, 150, 414
BspACI	CCGC	9 cut(s)	203, 206, 254, 281, 404, 441, 480, 513, 536
BspANI	GGCC	2 cut(s)	161, 352
BspDI	ATCGAT	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	281, 536
BspLI	GGNNCC	2 cut(s)	195, 246
BspPI	GGATC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	195, 470
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	3 cut(s)	140, 150, 414
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	37, 404
BstFNI	CGCG	2 cut(s)	281, 536
BstKTI	GATC	3 cut(s)	143, 153, 417
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	3 cut(s)	140, 150, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	281, 536
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	363
Bsu15I	ATCGAT	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	161, 352
BsuTUI	ATCGAT	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	37, 404
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	149
CseI	GACGC	2 cut(s)	538, 542
CviAII	CATG	4 cut(s)	8, 157, 307, 509
CviJI	RGCY	9 cut(s)	161, 209, 226, 245, 284, 352, 430, 520, 530
CviKI_1	RGCY	9 cut(s)	161, 209, 226, 245, 284, 352, 430, 520, 530
DpnI	GATC	3 cut(s)	142, 152, 416
DpnII	GATC	3 cut(s)	140, 150, 414
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	528
Eco31I	GGTCTC	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	289
FaeI	CATG	4 cut(s)	11, 160, 310, 512
FaiI	YATR	6 cut(s)	9, 71, 158, 308, 369, 510
FaqI	GGGAC	2 cut(s)	352, 396
FatI	CATG	4 cut(s)	7, 156, 306, 508
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	5 cut(s)	204, 207, 254, 282, 285
FokI	GGATG	2 cut(s)	24, 411
Fsp4HI	GCNGC	5 cut(s)	204, 207, 254, 282, 285
GluI	GCNGC	5 cut(s)	204, 207, 254, 282, 285
HaeIII	GGCC	2 cut(s)	161, 352
HapII	CCGG	3 cut(s)	197, 242, 477
HgaI	GACGC	2 cut(s)	538, 542
Hin1II	CATG	4 cut(s)	11, 160, 310, 512
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	8 cut(s)	107, 230, 371, 384, 423, 437, 449, 495
HpaII	CCGG	3 cut(s)	197, 242, 477
HphI	GGTGA	1 cut(s)	102
Hpy188I	TCNGA	3 cut(s)	59, 322, 494
Hpy188III	TCNNGA	3 cut(s)	260, 381, 503
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	11, 160, 310, 512
Kzo9I	GATC	3 cut(s)	140, 150, 414
LmnI	GCTCC	2 cut(s)	219, 250
LpnPI	CCDG	9 cut(s)	148, 176, 210, 236, 255, 333, 366, 451, 490
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	6
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	302, 550
MalI	GATC	3 cut(s)	142, 152, 416
MboI	GATC	3 cut(s)	140, 150, 414
MboII	GAAGA	2 cut(s)	150, 368
MhlI	GDGCHC	1 cut(s)	216
MlyI	GAGTC	7 cut(s)	101, 224, 378, 432, 443, 446, 489
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	76, 127, 227, 258, 285, 573
MseI	TTAA	3 cut(s)	45, 167, 471
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	3 cut(s)	197, 242, 477
MspR9I	CCNGG	1 cut(s)	242
MvnI	CGCG	2 cut(s)	281, 536
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	140, 150, 414
NlaIII	CATG	4 cut(s)	11, 160, 310, 512
NlaIV	GGNNCC	2 cut(s)	195, 246
NmuCI	GTSAC	2 cut(s)	302, 550
NspI	RCATGY	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	5 cut(s)	205, 208, 255, 283, 286
PleI	GAGTC	7 cut(s)	101, 224, 378, 431, 443, 445, 489
PpsI	GAGTC	7 cut(s)	101, 224, 378, 431, 443, 445, 489
PspN4I	GGNNCC	2 cut(s)	195, 246
PspPI	GGNCC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	45, 167, 471
SatI	GCNGC	5 cut(s)	204, 207, 254, 282, 285
Sau3AI	GATC	3 cut(s)	140, 150, 414
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	7 cut(s)	101, 224, 378, 432, 443, 446, 489
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	7 cut(s)	115, 228, 363, 432, 522, 532, 546
SfaNI	GCATC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	507
SsiI	CCGC	9 cut(s)	203, 206, 254, 281, 404, 441, 480, 513, 536
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	14, 149, 228, 237
TauI	GCSGC	4 cut(s)	206, 209, 256, 284
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	3 cut(s)	45, 167, 471
Tru9I	TTAA	3 cut(s)	45, 167, 471
TseFI	GTSAC	2 cut(s)	302, 550
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	2 cut(s)	302, 550
TspGWI	ACGGA	1 cut(s)	30
XceI	RCATGY	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.