Rroxscaffold_6G00427290

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000797
Physical Location & Seq
Reverse (-)
47882416 .. 47896971
14556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427290.1

Sequence Viewer

Length: 927 bp
ATGCCCGAGTCAAACAACCATAACTCACCTTCCCCTTCAACTCAAGCTAGTAGAAGATCATCGTCATCTTCATCATGGCCCTTGAACTTTCTCTTCTTCTCAATACTGGTTCCTGTGGCGGCAGCTCTGCTAATCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTGAGCCACCGAGTCACAGCTGCCCCAGCGAGTAATGCTCACATGCTCAAAGGATCGGAGTTTATAGGTGTTGGGGCTTTAATGGGGCCGGAAGACATTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGCTGTGTGGACGGGTCGGTCAAGCGAGTCACGTTGAACGGGTCGGCTGCTGACTCGGTGGTTGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGTCATGACGGTCAGCTCTTGGTCGCGGATGCAGAGAAGGGACTACTGAGTATAACTGAGGATGGAGAAGTGGAGCTGTTGACTGATGAGGCTGAGGGTGTGAAATTCAAGCTTACAGATGCTGTGGATGTAGCAAAAGATGGCATGATTTACTTCACAGATGCTTCGTATATGTACAGCTTAAAAGACTTCTTCTTGGACCTTTTGGAGGGCAAACCCCATGGTAGATTTCTCAGCTACGATCCAACTATGAAAGAGACCAAAGTGCTAGTCCCCGACCTCTACTTTGCTAATGGAGTTGCAGTCTCTCCGGATCAGAATTTTGTGATCTTCTGTGAAAGTTTCATGAGAAGATGTAAAAAGTACTACCTGCAAGGCGAGAAGAAAGGAGACGTAGAGAACTTCATTGACAACTTGCCGGGCCCCCTGATAATATTCGATATGATGGAGAAGGCCATTACTGGATTGCATTTCCTACGGAGATTACAGATTCTTGGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

308

Amino Acids

33.72

Weight (kDa)

5.02

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 77 - 115 1.9e-06 Strictosidine synthase-like, N-terminal
SGL PF08450 101 - 278 1.1e-08 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 181 - 267 8.7e-34 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 801
AccII CGCG 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 4 cut(s) 119, 173, 399, 449
AclWI GGATC 3 cut(s) 244, 659, 744
AcsI RAATTY 2 cut(s) 527, 742
AfaI GTAC 2 cut(s) 599, 788
AfiI CCNNNNNNNGG 1 cut(s) 631
AgsI TTSAA 5 cut(s) 39, 85, 294, 352, 532
AluBI AGCT 9 cut(s) 47, 125, 145, 203, 439, 499, 535, 603, 660
AluI AGCT 9 cut(s) 47, 125, 145, 203, 439, 499, 535, 603, 660
Alw26I GTCTC 4 cut(s) 397, 674, 733, 807
AlwI GGATC 3 cut(s) 244, 659, 744
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 4 cut(s) 77, 269, 844, 876
ApaI GGGCCC 1 cut(s) 848
ApeKI GCWGC 3 cut(s) 122, 203, 362
ApoI RAATTY 2 cut(s) 527, 742
ArsI GACNNNNNNTTYG 4 cut(s) 678, 692, 710, 724
AspS9I GGNCC 5 cut(s) 78, 269, 622, 844, 845
AsuC2I CCSGG 2 cut(s) 161, 843
AsuHPI GGTGA 1 cut(s) 18
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 1 cut(s) 622
BaeGI GKGCMC 1 cut(s) 848
BanII GRGCYC 1 cut(s) 848
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 134, 190, 349
BccI CCATC 3 cut(s) 479, 557, 862
BcnI CCSGG 2 cut(s) 161, 843
BcoDI GTCTC 4 cut(s) 397, 674, 733, 807
BfaI CTAG 3 cut(s) 48, 692, 925
BfuAI ACCTGC 1 cut(s) 801
BisI GCNGC 5 cut(s) 120, 123, 173, 204, 363
BlsI GCNGC 5 cut(s) 121, 124, 174, 205, 364
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 2 cut(s) 161, 843
Bme18I GGWCC 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 5 cut(s) 78, 269, 622, 844, 845
BmiI GGNNCC 5 cut(s) 111, 165, 270, 846, 847
BmrFI CCNGG 2 cut(s) 161, 843
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 442, 532, 574
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 205, 237
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 161, 843
BsaI GGTCTC 2 cut(s) 397, 674
BsaJI CCNNGG 1 cut(s) 643
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 111, 389, 889
Bse3DI GCAATG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 733
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 3 cut(s) 457, 490, 556
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 4 cut(s) 461, 471, 507, 670
BseNI ACTGG 3 cut(s) 111, 389, 889
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 3 cut(s) 134, 190, 349
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 4 cut(s) 79, 271, 846, 878
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 5 cut(s) 161, 272, 396, 734, 842
BslFI GGGAC 3 cut(s) 315, 477, 680
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 4 cut(s) 397, 674, 733, 807
BsmBI CGTCTC 1 cut(s) 807
BsmFI GGGAC 3 cut(s) 315, 477, 680
BsnI GGCC 4 cut(s) 79, 271, 846, 878
Bso31I GGTCTC 2 cut(s) 397, 674
BsoBI CYCGRG 1 cut(s) 5
Bsp120I GGGCCC 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 5 cut(s) 56, 236, 664, 736, 750
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 4 cut(s) 119, 173, 399, 449
BspANI GGCC 4 cut(s) 79, 271, 846, 878
BspCNI CTCAG 4 cut(s) 462, 472, 508, 669
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 1 cut(s) 449
BspHI TCATGA 2 cut(s) 427, 768
BspLI GGNNCC 5 cut(s) 111, 165, 270, 846, 847
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 3 cut(s) 244, 659, 744
BspTNI GGTCTC 2 cut(s) 397, 674
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 3 cut(s) 111, 389, 889
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 5 cut(s) 56, 236, 664, 736, 750
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 425, 434
Bst6I CTCTTC 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 597
BstDEI CTNAG 4 cut(s) 470, 480, 516, 656
BstDSI CCRYGG 1 cut(s) 643
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 3 cut(s) 457, 490, 556
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 5 cut(s) 59, 239, 667, 739, 753
BstMAI GTCTC 4 cut(s) 397, 674, 733, 807
BstMBI GATC 5 cut(s) 56, 236, 664, 736, 750
BstMWI GCNNNNNNNGC 2 cut(s) 209, 218
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 159, 841
BstSLI GKGCMC 1 cut(s) 848
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 134, 190, 349
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 4 cut(s) 79, 271, 846, 878
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 3 cut(s) 457, 490, 556
BveI ACCTGC 1 cut(s) 801
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 2 cut(s) 427, 768
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 5 cut(s) 78, 269, 622, 844, 845
Csp6I GTAC 2 cut(s) 598, 787
CviAII CATG 6 cut(s) 75, 226, 428, 568, 644, 769
CviQI GTAC 2 cut(s) 598, 787
DdeI CTNAG 4 cut(s) 470, 480, 516, 656
DpnI GATC 5 cut(s) 58, 238, 666, 738, 752
DpnII GATC 5 cut(s) 56, 236, 664, 736, 750
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 848
Eco31I GGTCTC 2 cut(s) 397, 674
Eco47I GGWCC 1 cut(s) 622
Eco88I CYCGRG 1 cut(s) 5
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 845
EcoT14I CCWWGG 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 848
ErhI CCWWGG 1 cut(s) 643
Esp3I CGTCTC 1 cut(s) 807
FaeI CATG 6 cut(s) 78, 229, 431, 571, 647, 772
FaqI GGGAC 3 cut(s) 315, 477, 680
FatI CATG 6 cut(s) 74, 225, 427, 567, 643, 768
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 5 cut(s) 120, 123, 173, 204, 363
FokI GGATG 3 cut(s) 464, 497, 563
FriOI GRGCYC 1 cut(s) 848
Fsp4HI GCNGC 5 cut(s) 120, 123, 173, 204, 363
FspBI CTAG 3 cut(s) 48, 692, 925
GluI GCNGC 5 cut(s) 120, 123, 173, 204, 363
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 4 cut(s) 79, 271, 846, 878
HapII CCGG 5 cut(s) 161, 272, 396, 734, 842
Hin1II CATG 6 cut(s) 78, 229, 431, 571, 647, 772
HincII GTYRAC 2 cut(s) 391, 504
HindII GTYRAC 2 cut(s) 391, 504
HindIII AAGCTT 1 cut(s) 533
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 5 cut(s) 161, 272, 396, 734, 842
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 3 cut(s) 325, 391, 504
Hpy188I TCNGA 3 cut(s) 241, 413, 741
Hpy188III TCNNGA 5 cut(s) 179, 300, 428, 734, 769
Hpy8I GTNNAC 3 cut(s) 325, 391, 504
HpyAV CCTTC 4 cut(s) 39, 45, 454, 868
HpyCH4III ACNGT 2 cut(s) 425, 434
HpyCH4IV ACGT 2 cut(s) 347, 816
HpyCH4V TGCA 4 cut(s) 455, 725, 796, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 218
HpyF3I CTNAG 4 cut(s) 470, 480, 516, 656
HpySE526I ACGT 2 cut(s) 347, 816
Hsp92II CATG 6 cut(s) 78, 229, 431, 571, 647, 772
Kpn2I TCCGGA 1 cut(s) 733
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 56, 236, 664, 736, 750
LmnI GCTCC 2 cut(s) 169, 496
Lsp1109I GCAGC 3 cut(s) 134, 190, 349
LweI GCATC 3 cut(s) 442, 532, 574
MaeI CTAG 3 cut(s) 48, 692, 925
MaeII ACGT 2 cut(s) 347, 816
MaeIII GTNAC 2 cut(s) 196, 343
MalI GATC 5 cut(s) 58, 238, 666, 738, 752
MboI GATC 5 cut(s) 56, 236, 664, 736, 750
MboII GAAGA 9 cut(s) 60, 66, 85, 88, 287, 607, 745, 786, 817
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 2 cut(s) 527, 742
MlyI GAGTC 7 cut(s) 17, 143, 204, 297, 351, 362, 408
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 7 cut(s) 146, 177, 475, 505, 511, 625, 713
MroI TCCGGA 1 cut(s) 733
MseI TTAA 3 cut(s) 263, 390, 605
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 5 cut(s) 161, 272, 396, 734, 842
MspR9I CCNGG 2 cut(s) 161, 843
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 209, 218
NciI CCSGG 2 cut(s) 161, 843
NcoI CCATGG 1 cut(s) 643
NdeII GATC 5 cut(s) 56, 236, 664, 736, 750
NlaIII CATG 6 cut(s) 78, 229, 431, 571, 647, 772
NlaIV GGNNCC 5 cut(s) 111, 165, 270, 846, 847
NmuCI GTSAC 2 cut(s) 196, 343
NspI RCATGY 1 cut(s) 229
PagI TCATGA 2 cut(s) 427, 768
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 3 cut(s) 290, 913, 921
PkrI GCNGC 5 cut(s) 121, 124, 174, 205, 364
PleI GAGTC 7 cut(s) 16, 143, 203, 297, 350, 362, 408
PpsI GAGTC 7 cut(s) 16, 143, 203, 297, 350, 362, 408
PspFI CCCAGC 1 cut(s) 208
PspN4I GGNNCC 5 cut(s) 111, 165, 270, 846, 847
PspOMI GGGCCC 1 cut(s) 844
PspPI GGNCC 5 cut(s) 78, 269, 622, 844, 845
PstNI CAGNNNCTG 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 599, 788
RsaNI GTAC 2 cut(s) 598, 787
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 3 cut(s) 263, 390, 605
SatI GCNGC 5 cut(s) 120, 123, 173, 204, 363
Sau3AI GATC 5 cut(s) 56, 236, 664, 736, 750
Sau96I GGNCC 5 cut(s) 78, 269, 622, 844, 845
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 7 cut(s) 17, 143, 204, 297, 351, 362, 408
ScrFI CCNGG 2 cut(s) 161, 843
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 3 cut(s) 442, 532, 574
SgrAI CRCCGGYG 1 cut(s) 395
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 527, 742
SsiI CCGC 4 cut(s) 119, 173, 399, 449
SspI AATATT 1 cut(s) 858
SspMI CTAG 3 cut(s) 48, 692, 925
StyD4I CCNGG 2 cut(s) 159, 841
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 2 cut(s) 425, 434
TaiI ACGT 2 cut(s) 350, 819
TaqI TCGA 3 cut(s) 147, 156, 861
TaqII GACCGA 1 cut(s) 322
TasI AATT 2 cut(s) 527, 742
TatI WGTACW 2 cut(s) 597, 786
TauI GCSGC 2 cut(s) 122, 175
TfiI GAWTC 3 cut(s) 290, 913, 921
Tru1I TTAA 3 cut(s) 263, 390, 605
Tru9I TTAA 3 cut(s) 263, 390, 605
TseFI GTSAC 2 cut(s) 196, 343
TseI GCWGC 3 cut(s) 122, 203, 362
Tsp45I GTSAC 2 cut(s) 196, 343
TspDTI ATGAA 4 cut(s) 60, 689, 757, 817
TspGWI ACGGA 1 cut(s) 916
VpaK11BI GGWCC 1 cut(s) 622
XagI CCTNNNNNAGG 1 cut(s) 629
XapI RAATTY 2 cut(s) 527, 742
XceI RCATGY 1 cut(s) 229
XspI CTAG 3 cut(s) 48, 692, 925
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.