Rh3AG017400

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000797
Physical Location & Seq
Reverse (-)
1115933 .. 1118566
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG017400.1

Sequence Viewer

Length: 1185 bp
ATGCCCGAGTCAAACAACCAGAACTCACCTTCCCCTTCAACTCAAGCTAGTAGAAGATCATCGTCATCTTCATCATGGCCTTTGAACTTTCTCTTCTTCTCAATACTGGTTCCTGTGGCGGCAGCTCTGCTAATCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTAAGCCACCGAGTCACAGCTGCCCCAACGCGTAATGATCACATGCTCAAAGGGTCGGAGTTTATAGGTGTTGGGGCTTTAATGGCGCCGGAAGACATTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGCTGTGCGGACGGGTGGGTCAAGCGAGTCACGTTGAACGAGTCGGCTGCTGACTCGGTGGTTGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGTCATGACGGTCAGCTCTTGGTCGCGGATACAGAGAAGGGACTACTGAGTATAACTGAGGATGGAGAAGTGGAGCTGTTGACTGATGAGGCTGAGGGTGTGAAATTCAAGCTTACAGATGCTGTGGATGTAGCAAAAGATGGCATGATTTACTTCACAGATGCTTCGTATATGTACAGCTTAAAAGACTTCATGTTTGACCTTTTGGAGGGCAAACCCCATGGTAGATTTCTCAGCTACGACCCAACTATGAAAGAGACCAAAGTGCTAGTCCCCGACCTCTACTTTGCTAATGGAGTTGCAGTCTCTCCGGATCAGAATTTTGTGATCTTCTGTGAAAGTGTCATGAGAAGATGTAAAAAGTACTACCTGCAAGGCGAGAAGAAAGGAAACGTAGAGAACTTCATTGACAACTTGCCGGGCCCCCCTGATAATATTCGATATGATGGAGAAGGCCATTACTGGATTGCATTTCCTACGGGGATTACAGATTCTTGGAATCTAGCAATTAGGTACCCTTTTATTCGAAAATGGCTGGCAATCATGGAGAAATATACAGCAGGAAGACCGCATATGGAGAAAAATTCTGGTGTAATGGCTGTTAATTTGGAAGGGGAACTTATTGCCCACTATTTTGATCCAGGGTTATCAGCCATTTCAAGTGGGATCAAGATTGGAAATTACCTATACTGCGGTTCAATTTTCAATCCATACATTATCCGCTTTGATCTGGAACGACATCCTGCACATGCCGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

394

Amino Acids

43.7

Weight (kDa)

5.17

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 77 - 115 2.6e-06 Strictosidine synthase-like, N-terminal
SGL PF08450 130 - 300 3.2e-14 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 181 - 267 3.7e-34 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 801
Acc65I GGTACC 1 cut(s) 936
AccB1I GGYRCC 2 cut(s) 268, 936
AccII CGCG 2 cut(s) 214, 449
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 9 cut(s) 119, 173, 323, 399, 449, 992, 1116, 1144, 1176
AclWI GGATC 3 cut(s) 744, 1055, 1097
AcsI RAATTY 3 cut(s) 527, 742, 1006
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 3 cut(s) 599, 788, 938
AfiI CCNNNNNNNGG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 8 cut(s) 39, 85, 294, 352, 532, 1083, 1122, 1129
AjnI CCWGG 1 cut(s) 1063
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 9 cut(s) 47, 125, 145, 203, 439, 499, 535, 603, 660
AluI AGCT 9 cut(s) 47, 125, 145, 203, 439, 499, 535, 603, 660
Alw26I GTCTC 3 cut(s) 397, 674, 733
AlwI GGATC 3 cut(s) 744, 1055, 1097
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 3 cut(s) 77, 844, 877
ApaI GGGCCC 1 cut(s) 848
ApeKI GCWGC 3 cut(s) 122, 203, 362
ApoI RAATTY 3 cut(s) 527, 742, 1006
ArsI GACNNNNNNTTYG 6 cut(s) 602, 634, 678, 692, 710, 724
Asp718I GGTACC 1 cut(s) 936
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 844, 845
AsuC2I CCSGG 2 cut(s) 161, 843
AsuHPI GGTGA 1 cut(s) 18
AsuII TTCGAA 1 cut(s) 949
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 848
BanI GGYRCC 2 cut(s) 268, 936
BanII GRGCYC 1 cut(s) 848
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 282, 994
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 134, 190, 349
BccI CCATC 3 cut(s) 479, 557, 863
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 1065
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 161, 843
BcoDI GTCTC 3 cut(s) 397, 674, 733
BfaI CTAG 3 cut(s) 48, 692, 926
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 801
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
BlsI GCNGC 6 cut(s) 121, 124, 174, 205, 364, 1177
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 161, 843, 1065
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 844, 845
BmiI GGNNCC 6 cut(s) 111, 165, 270, 846, 847, 938
BmrFI CCNGG 3 cut(s) 161, 843, 1065
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 2 cut(s) 532, 574
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 282, 994
Bpu10I CCTNAGC 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 949
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 161, 843
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 2 cut(s) 397, 674
BsaJI CCNNGG 2 cut(s) 643, 1064
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 111, 389, 890
Bse3DI GCAATG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 1 cut(s) 1065
BseDI CCNNGG 2 cut(s) 643, 1064
BseGI GGATG 3 cut(s) 490, 556, 1162
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 4 cut(s) 461, 471, 507, 670
BseNI ACTGG 3 cut(s) 111, 389, 890
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 3 cut(s) 134, 190, 349
BsgI GTGCAG 1 cut(s) 1152
Bsh1236I CGCG 2 cut(s) 214, 449
BshFI GGCC 3 cut(s) 79, 846, 879
BshNI GGYRCC 2 cut(s) 268, 936
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 5 cut(s) 161, 272, 396, 734, 842
BslFI GGGAC 3 cut(s) 315, 477, 680
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 3 cut(s) 397, 674, 733
BsmFI GGGAC 3 cut(s) 315, 477, 680
BsnI GGCC 3 cut(s) 79, 846, 879
Bso31I GGTCTC 2 cut(s) 397, 674
BsoBI CYCGRG 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 949
Bsp120I GGGCCC 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 9 cut(s) 119, 173, 323, 399, 449, 992, 1116, 1144, 1176
BspANI GGCC 3 cut(s) 79, 846, 879
BspCNI CTCAG 4 cut(s) 462, 472, 508, 669
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 2 cut(s) 214, 449
BspHI TCATGA 2 cut(s) 427, 768
BspLI GGNNCC 6 cut(s) 111, 165, 270, 846, 847, 938
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 3 cut(s) 744, 1055, 1097
BspT104I TTCGAA 1 cut(s) 949
BspT107I GGYRCC 2 cut(s) 268, 936
BspTNI GGTCTC 2 cut(s) 397, 674
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 3 cut(s) 111, 389, 890
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 643, 1064
BssMI GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 1065
Bst4CI ACNGT 2 cut(s) 425, 434
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 597
BstBI TTCGAA 1 cut(s) 949
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 4 cut(s) 470, 480, 516, 656
BstDSI CCRYGG 1 cut(s) 643
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 3 cut(s) 490, 556, 1162
BstFNI CGCG 2 cut(s) 214, 449
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 7 cut(s) 59, 223, 739, 753, 1063, 1092, 1153
BstMAI GTCTC 3 cut(s) 397, 674, 733
BstMBI GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 266, 1175
BstNI CCWGG 1 cut(s) 1065
BstNSI RCATGY 2 cut(s) 229, 1175
BstSCI CCNGG 3 cut(s) 159, 841, 1063
BstSLI GKGCMC 1 cut(s) 848
BstUI CGCG 2 cut(s) 214, 449
BstV1I GCAGC 3 cut(s) 134, 190, 349
BstV2I GAAGAC 2 cut(s) 282, 994
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 3 cut(s) 79, 846, 879
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 3 cut(s) 490, 556, 1162
BveI ACCTGC 1 cut(s) 801
Cac8I GCNNGC 1 cut(s) 960
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 2 cut(s) 427, 768
CfoI GCGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 844, 845
Csp6I GTAC 3 cut(s) 598, 787, 937
CviQI GTAC 3 cut(s) 598, 787, 937
DdeI CTNAG 4 cut(s) 470, 480, 516, 656
DinI GGCGCC 1 cut(s) 270
DpnI GATC 7 cut(s) 58, 222, 738, 752, 1062, 1091, 1152
DpnII GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 848
Eco31I GGTCTC 2 cut(s) 397, 674
Eco88I CYCGRG 1 cut(s) 5
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 845
EcoRII CCWGG 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 848
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 643
FalI AAGNNNNNCTT 2 cut(s) 1026, 1058
FaqI GGGAC 3 cut(s) 315, 477, 680
FauI CCCGC 1 cut(s) 392
FauNDI CATATG 1 cut(s) 996
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
FokI GGATG 3 cut(s) 497, 563, 1149
FriOI GRGCYC 1 cut(s) 848
Fsp4HI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
FspBI CTAG 3 cut(s) 48, 692, 926
GlaI GCGC 1 cut(s) 270
GluI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 3 cut(s) 79, 846, 879
HapII CCGG 5 cut(s) 161, 272, 396, 734, 842
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 269
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 2 cut(s) 391, 504
HindII GTYRAC 2 cut(s) 391, 504
HindIII AAGCTT 1 cut(s) 533
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 5 cut(s) 161, 272, 396, 734, 842
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 2 cut(s) 391, 504
Hpy188I TCNGA 3 cut(s) 241, 413, 741
Hpy188III TCNNGA 7 cut(s) 179, 300, 428, 734, 769, 1093, 1154
Hpy8I GTNNAC 2 cut(s) 391, 504
HpyAV CCTTC 5 cut(s) 39, 45, 454, 869, 1028
HpyCH4III ACNGT 2 cut(s) 425, 434
HpyCH4IV ACGT 2 cut(s) 347, 816
HpyCH4V TGCA 4 cut(s) 725, 796, 893, 1169
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 1175
HpyF3I CTNAG 4 cut(s) 470, 480, 516, 656
HpySE526I ACGT 2 cut(s) 347, 816
Hsp92I GRCGYC 1 cut(s) 269
HspAI GCGC 1 cut(s) 269
KasI GGCGCC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 733
KpnI GGTACC 1 cut(s) 940
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
LmnI GCTCC 2 cut(s) 169, 496
Lsp1109I GCAGC 3 cut(s) 134, 190, 349
LweI GCATC 2 cut(s) 532, 574
MaeI CTAG 3 cut(s) 48, 692, 926
MaeII ACGT 2 cut(s) 347, 816
MaeIII GTNAC 2 cut(s) 196, 343
MalI GATC 7 cut(s) 58, 222, 738, 752, 1062, 1091, 1152
MboI GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
MboII GAAGA 9 cut(s) 60, 66, 85, 88, 287, 745, 786, 817, 999
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 7 cut(s) 527, 742, 930, 1006, 1027, 1102, 1122
MluI ACGCGT 1 cut(s) 212
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 7 cut(s) 146, 177, 475, 505, 511, 625, 713
MroI TCCGGA 1 cut(s) 733
MseI TTAA 5 cut(s) 185, 263, 390, 605, 1026
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 5 cut(s) 161, 272, 396, 734, 842
MspR9I CCNGG 3 cut(s) 161, 843, 1065
MvaI CCWGG 1 cut(s) 1065
MvnI CGCG 2 cut(s) 214, 449
MwoI GCNNNNNNNGC 2 cut(s) 266, 1175
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 2 cut(s) 161, 843
NcoI CCATGG 1 cut(s) 643
NdeI CATATG 1 cut(s) 996
NdeII GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
NlaIV GGNNCC 6 cut(s) 111, 165, 270, 846, 847, 938
NmuCI GTSAC 2 cut(s) 196, 343
NspI RCATGY 2 cut(s) 229, 1175
NspV TTCGAA 1 cut(s) 949
PagI TCATGA 2 cut(s) 427, 768
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 3 cut(s) 290, 914, 922
PkrI GCNGC 6 cut(s) 121, 124, 174, 205, 364, 1177
PleI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
Psp6I CCWGG 1 cut(s) 1063
PspGI CCWGG 1 cut(s) 1063
PspN4I GGNNCC 6 cut(s) 111, 165, 270, 846, 847, 938
PspOMI GGGCCC 1 cut(s) 844
PspPI GGNCC 2 cut(s) 844, 845
PstNI CAGNNNCTG 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 599, 788, 938
RsaNI GTAC 3 cut(s) 598, 787, 937
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 5 cut(s) 185, 263, 390, 605, 1026
SatI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
Sau3AI GATC 7 cut(s) 56, 220, 736, 750, 1060, 1089, 1150
Sau96I GGNCC 2 cut(s) 844, 845
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
ScrFI CCNGG 3 cut(s) 161, 843, 1065
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 2 cut(s) 532, 574
SfoI GGCGCC 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 949
SgrAI CRCCGGYG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 7 cut(s) 527, 742, 930, 1006, 1027, 1102, 1122
SsiI CCGC 9 cut(s) 119, 173, 323, 399, 449, 992, 1116, 1144, 1176
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 859
SspMI CTAG 3 cut(s) 48, 692, 926
StyD4I CCNGG 3 cut(s) 159, 841, 1063
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 2 cut(s) 425, 434
TaiI ACGT 2 cut(s) 350, 819
TaqI TCGA 4 cut(s) 147, 156, 862, 949
TasI AATT 7 cut(s) 527, 742, 930, 1006, 1027, 1102, 1122
TatI WGTACW 2 cut(s) 597, 786
TauI GCSGC 3 cut(s) 122, 175, 1178
TfiI GAWTC 3 cut(s) 290, 914, 922
Tru1I TTAA 5 cut(s) 185, 263, 390, 605, 1026
Tru9I TTAA 5 cut(s) 185, 263, 390, 605, 1026
TseFI GTSAC 2 cut(s) 196, 343
TseI GCWGC 3 cut(s) 122, 203, 362
Tsp45I GTSAC 2 cut(s) 196, 343
TspDTI ATGAA 4 cut(s) 60, 604, 689, 817
XagI CCTNNNNNAGG 1 cut(s) 629
XapI RAATTY 3 cut(s) 527, 742, 1006
XceI RCATGY 2 cut(s) 229, 1175
XspI CTAG 3 cut(s) 48, 692, 926
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.