AT4G08950

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000422
Physical Location & Seq
Forward (+)
5740219 .. 5741591
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08950.1

Sequence Viewer

Length: 945 bp
ATGTATTTGTTAGTGTTTAAACTCTTTCTATTTTTGTCTCTTCTTCAAATCTCTGTCTCTGCTAGAAACCTAGCTTCACAAGAACCAAACCAGTTTCAACTACTCAAGTACCACAAAGGAGCTCTTCTCTCCGGCAAAATCTCCGTTAACCTAATCTGGTACGGCAAATTCAAACCATCTCAAAGAGCAATCATCTCCGACTTCATTACCTCACTCACACACACTTCTCCTACGTCCAAAACTCTCCACCAACCATCTGTTGCCACGTGGTGGAAAACCACAGAAAAATACTACAAACTCGCAACACCCAGCAAAAACTCATCACCTCTGTCTCTAACTCTCGGGAAACAAATCATCGACGAGTCTTGCTCTCTAGGAAAATCTTTAACCGATAAAAAGATTCAAACCCTAGCTTCGAAAGGAGACCAACGCAACGCCATCAACGTCGTTTTGACTTCAGCTGACGTTACGGTTACAGGATTTGGTATGAGTCGTTGCGGGACTCACGGACACGCTCGTGGTTTAGGTAAACGTGGCTCCAAGTTTGCTTACATTTGGGTTGGAAACTCTGAGACACAATGTCCTGGTCAATGCGCGTGGCCTTTCCACGCGCCGGTGTACGGTCCACAGAGTCCACCACTAGTGGCACCAAACAATGACGTGGGACTCGATGGGATGGTTATTAACTTAGCTAGTCTTTTAGCTGGAACCGCAACGAACCCTTTTGGTAATGGTTACTATCAAGGTCCACAAAACGCACCGCTTGAAGCTGCTTCTGCTTGTCCTGGCGTTTATGGTAAAGGAGCTTATCCTGGTTACGCTGGAGATTTGCTTGTGGATACTACAACGGGAGGTAGTTTTAATGCGTATGGTGCAAACGGCAGGAAGTTTTTGCTTCCTGCTTTGTATGATCCTACGACGTCGGCTTGCTCTACTATGGTCTGA

Protein Analysis

314

Amino Acids

33.6

Weight (kDa)

9.39

Isoelectric Point (pI)

28.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 35 - 313 3.1e-125 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 923
AccB1I GGYRCC 1 cut(s) 646
AccB7I CCANNNNNTGG 1 cut(s) 270
AccII CGCG 2 cut(s) 596, 611
AciI CCGC 3 cut(s) 498, 711, 761
AclWI GGATC 1 cut(s) 905
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 441
AcvI CACGTG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 920
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 3 cut(s) 110, 161, 620
AfiI CCNNNNNNNGG 3 cut(s) 270, 613, 620
AgsI TTSAA 5 cut(s) 47, 98, 172, 404, 767
AhdI GACNNNNNGTC 1 cut(s) 579
AhlI ACTAGT 1 cut(s) 640
AjiI CACGTC 1 cut(s) 661
AjnI CCWGG 3 cut(s) 583, 784, 811
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 8 cut(s) 74, 122, 413, 461, 692, 704, 770, 806
AluI AGCT 8 cut(s) 74, 122, 413, 461, 692, 704, 770, 806
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 5 cut(s) 42, 61, 336, 417, 566
AlwI GGATC 1 cut(s) 905
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 2 cut(s) 596, 613
AspS9I GGNCC 2 cut(s) 623, 746
AsuHPI GGTGA 1 cut(s) 315
AsuII TTCGAA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 623, 746
BaeI ACNNNNGTAYC 2 cut(s) 92, 125
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 516
BbrPI CACGTG 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 757
BccI CCATC 5 cut(s) 184, 262, 446, 665, 670
BceAI ACGGC 2 cut(s) 178, 895
BciT130I CCWGG 3 cut(s) 585, 786, 813
BciVI GTATCC 1 cut(s) 832
BcoDI GTCTC 5 cut(s) 42, 61, 336, 417, 566
BcuI ACTAGT 1 cut(s) 640
BfaI CTAG 6 cut(s) 63, 71, 374, 410, 641, 693
BfuI GTATCC 1 cut(s) 832
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 3 cut(s) 585, 786, 813
Bme18I GGWCC 2 cut(s) 623, 746
BmeRI GACNNNNNGTC 1 cut(s) 579
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 623, 746
BmiI GGNNCC 3 cut(s) 538, 648, 709
BmrFI CCNGG 3 cut(s) 585, 786, 813
BplI GAGNNNNNCTC 4 cut(s) 111, 143, 353, 385
BpmI CTGGAG 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 920
BsaI GGTCTC 1 cut(s) 417
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 613, 620
Bse118I RCCGGY 1 cut(s) 613
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 3 cut(s) 585, 786, 813
BseGI GGATG 1 cut(s) 681
BseLI CCNNNNNNNGG 3 cut(s) 270, 613, 620
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 757
BseYI CCCAGC 1 cut(s) 308
Bsh1236I CGCG 2 cut(s) 596, 611
BshFI GGCC 1 cut(s) 601
BshNI GGYRCC 1 cut(s) 646
BsiHKAI GWGCWC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 132, 614
BslFI GGGAC 2 cut(s) 514, 678
BslI CCNNNNNNNGG 3 cut(s) 270, 613, 620
BsmAI GTCTC 5 cut(s) 42, 61, 336, 417, 566
BsmFI GGGAC 2 cut(s) 514, 678
BsnI GGCC 1 cut(s) 601
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 910
BspACI CCGC 3 cut(s) 498, 711, 761
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 1 cut(s) 562
BspFNI CGCG 2 cut(s) 596, 611
BspLI GGNNCC 3 cut(s) 538, 648, 709
BspPI GGATC 1 cut(s) 905
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 646
BspTNI GGTCTC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 613
BsrI ACTGG 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 613
BssMI GATC 1 cut(s) 910
BssNI GRCGYC 1 cut(s) 920
BssSI CACGAG 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 3 cut(s) 585, 786, 813
Bst4CI ACNGT 2 cut(s) 472, 623
Bst6I CTCTTC 2 cut(s) 45, 129
BstACI GRCGYC 1 cut(s) 920
BstBAI YACGTR 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 2 cut(s) 570, 688
BstF5I GGATG 1 cut(s) 681
BstFNI CGCG 2 cut(s) 596, 611
BstHHI GCGC 2 cut(s) 596, 613
BstKTI GATC 1 cut(s) 913
BstMAI GTCTC 5 cut(s) 42, 61, 336, 417, 566
BstMBI GATC 1 cut(s) 910
BstMWI GCNNNNNNNGC 3 cut(s) 710, 776, 872
BstNI CCWGG 3 cut(s) 585, 786, 813
BstSCI CCNGG 3 cut(s) 583, 784, 811
BstUI CGCG 2 cut(s) 596, 611
BstV1I GCAGC 1 cut(s) 757
BsuI GTATCC 1 cut(s) 832
BsuRI GGCC 1 cut(s) 601
BtrI CACGTC 1 cut(s) 661
BtsCI GGATG 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 928
CfoI GCGC 2 cut(s) 596, 613
Cfr10I RCCGGY 1 cut(s) 613
Cfr13I GGNCC 2 cut(s) 623, 746
Csp6I GTAC 3 cut(s) 109, 160, 619
CspCI CAANNNNNGTGG 2 cut(s) 578, 613
CviQI GTAC 3 cut(s) 109, 160, 619
DdeI CTNAG 2 cut(s) 570, 688
DpnI GATC 1 cut(s) 912
DpnII GATC 1 cut(s) 910
DraI TTTAAA 1 cut(s) 19
DraIII CACNNNGTG 1 cut(s) 270
DriI GACNNNNNGTC 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 45, 129
Eam1105I GACNNNNNGTC 1 cut(s) 579
EarI CTCTTC 2 cut(s) 45, 129
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 623, 746
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 441
Eco72I CACGTG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 122
EcoRII CCWGG 3 cut(s) 583, 784, 811
EcoT38I GRGCYC 1 cut(s) 124
FaiI YATR 5 cut(s) 488, 795, 870, 909, 938
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 2 cut(s) 514, 678
FauI CCCGC 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 1 cut(s) 688
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 771
FspBI CTAG 6 cut(s) 63, 71, 374, 410, 641, 693
GlaI GCGC 2 cut(s) 595, 612
GluI GCNGC 1 cut(s) 771
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 1 cut(s) 601
HapII CCGG 2 cut(s) 132, 614
HhaI GCGC 2 cut(s) 596, 613
Hin1I GRCGYC 1 cut(s) 920
Hin6I GCGC 2 cut(s) 594, 611
HinP1I GCGC 2 cut(s) 594, 611
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 6 cut(s) 362, 400, 490, 502, 631, 666
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 2 cut(s) 132, 614
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 6 cut(s) 148, 530, 619, 626, 635, 749
Hpy188I TCNGA 3 cut(s) 199, 571, 944
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 6 cut(s) 148, 530, 619, 626, 635, 749
Hpy99I CGWCG 4 cut(s) 362, 449, 922, 925
HpyCH4III ACNGT 2 cut(s) 472, 623
HpyCH4IV ACGT 7 cut(s) 233, 266, 444, 465, 532, 660, 920
HpyCH4V TGCA 1 cut(s) 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 710, 776, 872
HpyF3I CTNAG 2 cut(s) 570, 688
HpySE526I ACGT 7 cut(s) 233, 266, 444, 465, 532, 660, 920
Hsp92I GRCGYC 1 cut(s) 920
HspAI GCGC 2 cut(s) 594, 611
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 910
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 3 cut(s) 119, 542, 803
Lsp1109I GCAGC 1 cut(s) 757
MaeI CTAG 6 cut(s) 63, 71, 374, 410, 641, 693
MaeII ACGT 7 cut(s) 233, 266, 444, 465, 532, 660, 920
MaeIII GTNAC 4 cut(s) 466, 472, 734, 815
MalI GATC 1 cut(s) 912
MboI GATC 1 cut(s) 910
MboII GAAGA 3 cut(s) 32, 35, 116
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 1 cut(s) 167
MlyI GAGTC 5 cut(s) 371, 496, 499, 640, 660
MmeI TCCRAC 2 cut(s) 222, 541
MnlI CCTC 3 cut(s) 220, 336, 845
MseI TTAA 5 cut(s) 18, 147, 386, 684, 861
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 132, 614
MspR9I CCNGG 3 cut(s) 585, 786, 813
MssI GTTTAAAC 1 cut(s) 19
MvaI CCWGG 3 cut(s) 585, 786, 813
MvnI CGCG 2 cut(s) 596, 611
MwoI GCNNNNNNNGC 3 cut(s) 710, 776, 872
NdeII GATC 1 cut(s) 910
NlaIV GGNNCC 3 cut(s) 538, 648, 709
NspV TTCGAA 1 cut(s) 416
OliI CACNNNNGTG 1 cut(s) 516
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 2 cut(s) 441, 666
PfeI GAWTC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 270
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 5 cut(s) 370, 496, 498, 639, 660
PmaCI CACGTG 1 cut(s) 267
PmeI GTTTAAAC 1 cut(s) 19
PmlI CACGTG 1 cut(s) 267
PpsI GAGTC 5 cut(s) 370, 496, 498, 639, 660
Ppu21I YACGTR 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 3 cut(s) 583, 784, 811
PspCI CACGTG 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 3 cut(s) 583, 784, 811
PspN4I GGNNCC 3 cut(s) 538, 648, 709
PspPI GGNCC 2 cut(s) 623, 746
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 110, 161, 620
RsaNI GTAC 3 cut(s) 109, 160, 619
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 5 cut(s) 18, 147, 386, 684, 861
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 1 cut(s) 910
Sau96I GGNCC 2 cut(s) 623, 746
SchI GAGTC 5 cut(s) 371, 496, 499, 640, 660
ScrFI CCNGG 3 cut(s) 585, 786, 813
SduI GDGCHC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 416
SgrAI CRCCGGYG 1 cut(s) 613
SinI GGWCC 2 cut(s) 623, 746
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 640
Sse9I AATT 1 cut(s) 167
SsiI CCGC 3 cut(s) 498, 711, 761
SspMI CTAG 6 cut(s) 63, 71, 374, 410, 641, 693
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 583, 784, 811
TaaI ACNGT 2 cut(s) 472, 623
TaiI ACGT 7 cut(s) 236, 269, 447, 468, 535, 663, 923
TaqI TCGA 3 cut(s) 357, 416, 669
TasI AATT 1 cut(s) 167
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 5 cut(s) 18, 147, 386, 684, 861
Tru9I TTAA 5 cut(s) 18, 147, 386, 684, 861
TseI GCWGC 1 cut(s) 770
TspDTI ATGAA 1 cut(s) 193
TspGWI ACGGA 2 cut(s) 133, 522
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 623, 746
XapI RAATTY 1 cut(s) 167
XspI CTAG 6 cut(s) 63, 71, 374, 410, 641, 693
ZraI GACGTC 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.