Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029916.1

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

1155 .. 1424

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029916.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggtcatcaacttggcgagcctcttggccggaacagcaaccaaccctttcggaaatgggtacttccagggtccggcggaggctccattggaggctgcttcggcttgtcccggggtttatgctaagggggcttatcccggttacgccggagacctcttggtggatgctacgactggtgcgagctacaatgccaatggcgccaatggaaggaagtacttggttcctgctctgtttgatccatctacctcaacctgttccactctggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0012505 GO:0014070 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

89

Amino Acids

8.91

Weight (kDa)

4.44

Isoelectric Point (pI)

19.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	62, 215
AfiI	CCNNNNNNNGG	3 cut(s)	73, 160, 207
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	3 cut(s)	111, 112, 138
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	3 cut(s)	111, 112, 138
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	268
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	4 cut(s)	68, 111, 112, 138
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	4 cut(s)	72, 84, 199, 222
BmrFI	CCNGG	4 cut(s)	68, 111, 112, 138
BmsI	GCATC	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	3 cut(s)	111, 112, 138
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	67, 110, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 160, 207
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	3 cut(s)	67, 110, 111
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	3 cut(s)	73, 160, 207
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	5 cut(s)	30, 74, 111, 138, 147
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	73, 160, 207
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	29
BspLI	GGNNCC	4 cut(s)	72, 84, 199, 222
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	67, 110, 111
BssMI	GATC	1 cut(s)	235
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	19, 181
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 101, 128, 197
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	4 cut(s)	66, 109, 110, 136
BstV1I	GCAGC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	19, 181
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	71
Cfr9I	CCCGGG	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	61, 214
CviJI	RGCY	7 cut(s)	21, 29, 83, 95, 104, 131, 183
CviKI_1	RGCY	7 cut(s)	21, 29, 83, 95, 104, 131, 183
CviQI	GTAC	2 cut(s)	61, 214
DdeI	CTNAG	1 cut(s)	123
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	66
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaiI	YATR	1 cut(s)	120
FaqI	GGGAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	268
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	5 cut(s)	30, 74, 111, 138, 147
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HpaII	CCGG	5 cut(s)	30, 74, 111, 138, 147
Hpy188I	TCNGA	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 101, 128, 197
HpyF3I	CTNAG	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
Mly113I	GGCGCC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	32, 73, 85, 164, 256
MspI	CCGG	5 cut(s)	30, 74, 111, 138, 147
MspR9I	CCNGG	4 cut(s)	68, 111, 112, 138
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	35, 101, 128, 197
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	3 cut(s)	111, 112, 138
NdeII	GATC	1 cut(s)	235
NlaIV	GGNNCC	4 cut(s)	72, 84, 199, 222
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	97
PluTI	GGCGCC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	4 cut(s)	72, 84, 199, 222
PspPI	GGNCC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	62, 215
RsaNI	GTAC	2 cut(s)	61, 214
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	71
ScaI	AGTACT	1 cut(s)	215
ScrFI	CCNGG	4 cut(s)	68, 111, 112, 138
SetI	ASST	4 cut(s)	156, 185, 248, 254
SfaNI	GCATC	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	71
SmaI	CCCGGG	1 cut(s)	112
SsiI	CCGC	1 cut(s)	77
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	268
StyD4I	CCNGG	4 cut(s)	66, 109, 110, 136
TatI	WGTACW	1 cut(s)	213
TseI	GCWGC	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	71
XmaI	CCCGGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.