Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

65420571 .. 65420840

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG459900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGATCATCAATCTAGCTAGTCTTTTGGCTGGGACCGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCATCAGCTTGTCCTGGAGTTTATGCTAAAGGAGCTTATCCTGGCTACGCTGGAGACCTCTTGGTTGATGCTGCGACTGGTGCCAGCTACAACGCCAATGGTTTGAATGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCTTCAACCTCAACTTGTTCTACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

89

Amino Acids

9.0

Weight (kDa)

4.86

Isoelectric Point (pI)

21.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	1 - 88	1.6e-41	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	202, 243
AjnI	CCWGG	3 cut(s)	66, 109, 136
AluBI	AGCT	4 cut(s)	17, 104, 131, 183
AluI	AGCT	4 cut(s)	17, 104, 131, 183
Alw26I	GTCTC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	95, 167
AspS9I	GGNCC	2 cut(s)	33, 71
AvaII	GGWCC	2 cut(s)	33, 71
BanI	GGYRCC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	82, 154
BciT130I	CCWGG	3 cut(s)	68, 111, 138
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	14, 18
BisI	GCNGC	2 cut(s)	96, 168
BlsI	GCNGC	2 cut(s)	97, 169
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	3 cut(s)	68, 111, 138
Bme18I	GGWCC	2 cut(s)	33, 71
BmgT120I	GGNCC	2 cut(s)	33, 71
BmiI	GGNNCC	5 cut(s)	34, 72, 73, 84, 178
BmrFI	CCNGG	3 cut(s)	68, 111, 138
BmsI	GCATC	2 cut(s)	107, 154
BpmI	CTGGAG	2 cut(s)	132, 168
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	3 cut(s)	68, 111, 138
BseDI	CCNNGG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	82, 154
BseYI	CCCAGC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	46, 57
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	46, 57
Bso31I	GGTCTC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	3
BspLI	GGNNCC	5 cut(s)	34, 72, 73, 84, 178
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	3 cut(s)	68, 111, 138
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 128, 176
BstNI	CCWGG	3 cut(s)	68, 111, 138
BstSCI	CCNGG	3 cut(s)	66, 109, 136
BstV1I	GCAGC	2 cut(s)	82, 154
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	33, 71
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	8 cut(s)	17, 29, 83, 95, 104, 131, 141, 183
CviKI_1	RGCY	8 cut(s)	17, 29, 83, 95, 104, 131, 141, 183
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	33, 71
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	66, 109, 136
FaiI	YATR	1 cut(s)	120
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	2 cut(s)	46, 57
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	96, 168
Fsp4HI	GCNGC	2 cut(s)	96, 168
FspBI	CTAG	2 cut(s)	14, 18
GluI	GCNGC	2 cut(s)	96, 168
GsaI	CCCAGC	1 cut(s)	33
GsuI	CTGGAG	2 cut(s)	132, 168
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 128, 176
KflI	GGGWCCC	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	88, 128
Lsp1109I	GCAGC	2 cut(s)	82, 154
LweI	GCATC	2 cut(s)	107, 154
MaeI	CTAG	2 cut(s)	14, 18
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	220
MnlI	CCTC	4 cut(s)	73, 85, 164, 256
MspR9I	CCNGG	3 cut(s)	68, 111, 138
MvaI	CCWGG	3 cut(s)	68, 111, 138
MwoI	GCNNNNNNNGC	3 cut(s)	101, 128, 176
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	5 cut(s)	34, 72, 73, 84, 178
NmuCI	GTSAC	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	97, 169
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	3 cut(s)	66, 109, 136
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	3 cut(s)	66, 109, 136
PspN4I	GGNNCC	5 cut(s)	34, 72, 73, 84, 178
PspPI	GGNCC	2 cut(s)	33, 71
PspPPI	RGGWCCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SatI	GCNGC	2 cut(s)	96, 168
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	33, 71
ScaI	AGTACT	1 cut(s)	215
ScrFI	CCNGG	3 cut(s)	68, 111, 138
SetI	ASST	6 cut(s)	19, 106, 133, 156, 185, 248
SfaNI	GCATC	2 cut(s)	107, 154
SinI	GGWCC	2 cut(s)	33, 71
SspMI	CTAG	2 cut(s)	14, 18
StyD4I	CCNGG	3 cut(s)	66, 109, 136
TaaI	ACNGT	1 cut(s)	37
TatI	WGTACW	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	95, 167
Tsp45I	GTSAC	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	33, 71
XspI	CTAG	2 cut(s)	14, 18
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.