Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

15845458 .. 15846216

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGACCATCTCAAATGTGTTTTCTATCCTTCGGAAGGTCTCAGAACTATTTTGGCTTCCAAACAAAACGGACGCGTTTTTGTCCGGGACAGCCACCAACCCATTCGGAGGTGGATACTTCCAGGGCCCGGCCGAGGCACCACTAGAAGCTTCCTCTGCCAGCCCTGGGGTTTACGGGAAGGGAGCTTATCCTGGTTATGCCGGGGACTTGCTGCAGGACCCCACCACCGGTGCCAGCTACAATGCCAATGGTTCTAATGGAAGGAAGTACTTGCTTCCTGCACTATATAATCCTGCAACTTCATCTTGCTTTACTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0012505 GO:0014070 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

108

Amino Acids

11.18

Weight (kDa)

6.06

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	26 - 106	2.4e-34	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	136, 230
AccII	CGCG	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	129
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	6 cut(s)	34, 107, 127, 133, 165, 227
AflIII	ACRYGT	1 cut(s)	72
AgeI	ACCGGT	1 cut(s)	227
AjnI	CCWGG	3 cut(s)	120, 163, 190
AluBI	AGCT	3 cut(s)	149, 185, 237
AluI	AGCT	3 cut(s)	149, 185, 237
Alw26I	GTCTC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	124, 129
ApaI	GGGCCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	124, 125, 217
AsuC2I	CCSGG	3 cut(s)	85, 128, 202
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	2 cut(s)	136, 230
BanII	GRGCYC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	3 cut(s)	122, 165, 192
BciVI	GTATCC	1 cut(s)	107
BcnI	CCSGG	3 cut(s)	85, 128, 202
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	6 cut(s)	85, 122, 128, 165, 192, 202
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	124, 125, 217
BmiI	GGNNCC	4 cut(s)	126, 138, 219, 232
BmrFI	CCNGG	6 cut(s)	85, 122, 128, 165, 192, 202
BpuMI	CCSGG	3 cut(s)	85, 128, 202
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	5 cut(s)	121, 132, 163, 164, 201
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 107, 127, 133, 165, 227
Bse118I	RCCGGY	1 cut(s)	227
BseBI	CCWGG	3 cut(s)	122, 165, 192
BseDI	CCNNGG	5 cut(s)	121, 132, 163, 164, 201
BseLI	CCNNNNNNNGG	6 cut(s)	34, 107, 127, 133, 165, 227
BseMII	CTCAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	128
BseX3I	CGGCCG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	126, 131
BshNI	GGYRCC	2 cut(s)	136, 230
BshTI	ACCGGT	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	132
BsiSI	CCGG	4 cut(s)	84, 128, 201, 228
BslFI	GGGAC	2 cut(s)	100, 218
BslI	CCNNNNNNNGG	6 cut(s)	34, 107, 127, 133, 165, 227
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	2 cut(s)	100, 218
BsnI	GGCC	2 cut(s)	126, 131
Bso31I	GGTCTC	1 cut(s)	43
Bsp120I	GGGCCC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	126, 131
BspCNI	CTCAG	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	4 cut(s)	126, 138, 219, 232
BspMAI	CTGCAG	1 cut(s)	216
BspT107I	GGYRCC	2 cut(s)	136, 230
BspTNI	GGTCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	5 cut(s)	121, 132, 163, 164, 201
Bst2UI	CCWGG	3 cut(s)	122, 165, 192
BstC8I	GCNNGC	2 cut(s)	160, 235
BstDEI	CTNAG	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	43
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	3 cut(s)	122, 165, 192
BstSCI	CCNGG	6 cut(s)	83, 120, 126, 163, 190, 200
BstSFI	CTRYAG	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	198
BstZI	CGGCCG	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	126, 131
Cac8I	GCNNGC	2 cut(s)	160, 235
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	124, 125, 217
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	227
CviJI	RGCY	8 cut(s)	55, 92, 126, 131, 149, 162, 185, 237
CviKI_1	RGCY	8 cut(s)	55, 92, 126, 131, 149, 162, 185, 237
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	129
EagI	CGGCCG	1 cut(s)	129
EclXI	CGGCCG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	217
Eco52I	CGGCCG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoO109I	RGGNCCY	2 cut(s)	124, 217
EcoRII	CCWGG	3 cut(s)	120, 163, 190
EcoT38I	GRGCYC	1 cut(s)	128
FaiI	YATR	3 cut(s)	198, 286, 288
FaqI	GGGAC	2 cut(s)	100, 218
Fnu4HI	GCNGC	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	126, 131
HapII	CCGG	4 cut(s)	84, 128, 201, 228
HgaI	GACGC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	147
HpaII	CCGG	4 cut(s)	84, 128, 201, 228
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	33, 43, 107
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	4 cut(s)	28, 38, 172, 255
HpyCH4V	TGCA	3 cut(s)	214, 281, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	128
MluI	ACGCGT	1 cut(s)	72
MnlI	CCTC	3 cut(s)	101, 127, 163
MspI	CCGG	4 cut(s)	84, 128, 201, 228
MspR9I	CCNGG	6 cut(s)	85, 122, 128, 165, 192, 202
MvaI	CCWGG	3 cut(s)	122, 165, 192
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	3 cut(s)	85, 128, 202
NlaIV	GGNNCC	4 cut(s)	126, 138, 219, 232
NmeAIII	GCCGAG	1 cut(s)	157
PasI	CCCWGGG	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	3 cut(s)	120, 163, 190
PspGI	CCWGG	3 cut(s)	120, 163, 190
PspN4I	GGNNCC	4 cut(s)	126, 138, 219, 232
PspOMI	GGGCCC	1 cut(s)	124
PspPI	GGNCC	3 cut(s)	124, 125, 217
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SatI	GCNGC	1 cut(s)	212
Sau96I	GGNCC	3 cut(s)	124, 125, 217
ScaI	AGTACT	1 cut(s)	269
ScrFI	CCNGG	6 cut(s)	85, 122, 128, 165, 192, 202
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	5 cut(s)	39, 112, 151, 187, 239
SfcI	CTRYAG	1 cut(s)	212
SgrAI	CRCCGGYG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	6 cut(s)	83, 120, 126, 163, 190, 200
TatI	WGTACW	1 cut(s)	267
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	217
XagI	CCTNNNNNAGG	1 cut(s)	32
XspI	CTAG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.