Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

23438222 .. 23439171

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1186000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTTTGAATTCTAGTCAGTGGCTTATGAAGCTGTTTGTTGTGACCACCTTGTTCCAAGTGTCATTTGGTTCCAGCAGGTTGTTCCAAGTCTCATTGGCAACGAGGAAGCTGAGCGAGCTTGTCCAAGATCAAACCCAGCTCCTCAAATACCACAACGGCCCTCTCCTCTCCGGCAAAATTACCATCAACCTCATCTGGTACGGTAACTTCAAGCCCTCCCAGAAAGCCATTGTTTCCGATTTCATCTCCTCTTTGTCCTCCTCCTCCCCTTCCAAAACCCCGCAACCCTCCGTCGCCGCCTGGTGGCAGACCACCGAGAAATACTACCACCTCACCTCCAACAAAAAGTCCTCCAACTCCCTCTCCCTCTCTCTGGGGAGACAGATTCTCGACCAAAGCTACTCCCTCGGCAAATCCCTCACCACCAAACAGATTGTCGCATTGGCCGCAAAGGGCGACCAGAAAAACGCCATCAATGTTGGCAGCAAGAACTCCAAGTTCGCTTACATTTGGGTTGGAAACTCGGAAACCCAATGCCCGGGGCAGTGCGCGTGGCCATTCCACCAGCCCATCTATGGGCCCCAGAGCCCACCCCTTGTAGCCCCCAACAACGACGTGGGCCTCGACGGCATGGTCATCAATCTGGCTAGCCTTATGGCCGGGACAGCCACCAACCCATTCGGAAATGGATACTTCCAGGGTCTGGCCGAGGCACCATTAGAAGCTTCCTCGGCCTGCCCTGGGATTTACGGGAAAGGAGCTTATCCTGGTTATGCCGGGGACCTGCTGCAGGACCCAACCACGGGCGCCAGCTACAATGCCAATGGTGCTAATGGAAGGAAGTACTTGCTTCCTGCACTATATAATCCTGCAACTTCATCTTGTTCCACTTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0012505 GO:0014070 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

301

Amino Acids

32.17

Weight (kDa)

9.3

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	49 - 161	7.3e-35	Phosphate-induced protein 1 conserved region
Phi_1	PF04674	162 - 299	4.7e-71	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	2 cut(s)	69, 795
AccB1I	GGYRCC	2 cut(s)	715, 809
AccB7I	CCANNNNNTGG	1 cut(s)	706
AccII	CGCG	1 cut(s)	554
AciI	CCGC	3 cut(s)	284, 300, 450
AcoI	YGGCCR	4 cut(s)	447, 557, 660, 708
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	810
AfaI	GTAC	2 cut(s)	203, 848
AgsI	TTSAA	2 cut(s)	10, 214
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	4 cut(s)	302, 699, 742, 769
AluBI	AGCT	8 cut(s)	34, 112, 121, 142, 402, 728, 764, 816
AluI	AGCT	8 cut(s)	34, 112, 121, 142, 402, 728, 764, 816
Alw26I	GTCTC	2 cut(s)	97, 376
AlwNI	CAGNNNCTG	1 cut(s)	706
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	8 cut(s)	160, 447, 557, 581, 622, 660, 708, 735
ApaI	GGGCCC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	486, 790
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
AspLEI	GCGC	2 cut(s)	554, 812
AspS9I	GGNCC	6 cut(s)	161, 581, 582, 622, 784, 796
AsuC2I	CCSGG	4 cut(s)	542, 543, 664, 781
AsuHPI	GGTGA	2 cut(s)	328, 415
AsuNHI	GCTAGC	1 cut(s)	650
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	2 cut(s)	784, 796
BaeGI	GKGCMC	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	559
BanI	GGYRCC	2 cut(s)	715, 809
BanII	GRGCYC	2 cut(s)	585, 593
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BbvI	GCAGC	2 cut(s)	498, 777
BccI	CCATC	3 cut(s)	194, 482, 581
BceAI	ACGGC	2 cut(s)	175, 646
BciT130I	CCWGG	4 cut(s)	304, 701, 744, 771
BciVI	GTATCC	1 cut(s)	686
BcnI	CCSGG	4 cut(s)	542, 543, 664, 781
BcoDI	GTCTC	2 cut(s)	97, 376
BfaI	CTAG	2 cut(s)	15, 651
BfmI	CTRYAG	1 cut(s)	791
BfoI	RGCGCY	1 cut(s)	813
BfuAI	ACCTGC	2 cut(s)	69, 795
BfuI	GTATCC	1 cut(s)	686
BglI	GCCNNNNNGGC	1 cut(s)	630
BisI	GCNGC	4 cut(s)	300, 450, 487, 791
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	4 cut(s)	301, 451, 488, 792
BmcAI	AGTACT	1 cut(s)	848
Bme1390I	CCNGG	8 cut(s)	304, 542, 543, 664, 701, 744, 771, 781
Bme18I	GGWCC	2 cut(s)	784, 796
BmeT110I	CYCGRG	1 cut(s)	541
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	6 cut(s)	161, 581, 582, 622, 784, 796
BmiI	GGNNCC	7 cut(s)	73, 583, 584, 717, 785, 798, 811
BmrFI	CCNGG	8 cut(s)	304, 542, 543, 664, 701, 744, 771, 781
BmtI	GCTAGC	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	113
BpuMI	CCSGG	4 cut(s)	542, 543, 664, 781
BsaHI	GRCGYC	1 cut(s)	810
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 350, 353, 380
BseBI	CCWGG	4 cut(s)	304, 701, 744, 771
BseMII	CTCAG	1 cut(s)	104
BseRI	GAGGAG	5 cut(s)	134, 158, 241, 253, 256
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	2 cut(s)	498, 777
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	8 cut(s)	162, 449, 559, 583, 624, 662, 710, 737
BshNI	GGYRCC	2 cut(s)	715, 809
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	4 cut(s)	174, 542, 663, 780
BslFI	GGGAC	2 cut(s)	679, 797
BsmAI	GTCTC	2 cut(s)	97, 376
BsmFI	GGGAC	2 cut(s)	679, 797
BsnI	GGCC	8 cut(s)	162, 449, 559, 583, 624, 662, 710, 737
BsoBI	CYCGRG	1 cut(s)	541
Bsp120I	GGGCCC	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	585, 593
Bsp143I	GATC	1 cut(s)	130
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	3 cut(s)	284, 300, 450
BspANI	GGCC	8 cut(s)	162, 449, 559, 583, 624, 662, 710, 737
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	7 cut(s)	73, 583, 584, 717, 785, 798, 811
BspMAI	CTGCAG	1 cut(s)	795
BspMI	ACCTGC	2 cut(s)	69, 795
BspOI	GCTAGC	1 cut(s)	654
BspT107I	GGYRCC	2 cut(s)	715, 809
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	810
Bst2UI	CCWGG	4 cut(s)	304, 701, 744, 771
Bst4CI	ACNGT	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	810
BstC8I	GCNNGC	4 cut(s)	119, 652, 739, 814
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	804
BstENI	CCTNNNNNAGG	1 cut(s)	791
BstFNI	CGCG	1 cut(s)	554
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	2 cut(s)	554, 812
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	97, 376
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 118, 449, 630, 668, 734, 830
BstNI	CCWGG	4 cut(s)	304, 701, 744, 771
BstSCI	CCNGG	8 cut(s)	302, 540, 541, 662, 699, 742, 769, 779
BstSFI	CTRYAG	1 cut(s)	791
BstSLI	GKGCMC	1 cut(s)	585
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	498, 777
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	8 cut(s)	162, 449, 559, 583, 624, 662, 710, 737
BtgI	CCRYGG	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	619
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	2 cut(s)	26, 554
BveI	ACCTGC	2 cut(s)	69, 795
Cac8I	GCNNGC	4 cut(s)	119, 652, 739, 814
CaiI	CAGNNNCTG	1 cut(s)	706
CfoI	GCGC	2 cut(s)	554, 812
Cfr13I	GGNCC	6 cut(s)	161, 581, 582, 622, 784, 796
Cfr9I	CCCGGG	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	202, 847
CviAII	CATG	1 cut(s)	634
CviQI	GTAC	2 cut(s)	202, 847
DdeI	CTNAG	1 cut(s)	113
DinI	GGCGCC	1 cut(s)	811
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	4 cut(s)	447, 557, 660, 708
Eco24I	GRGCYC	2 cut(s)	585, 593
Eco47I	GGWCC	2 cut(s)	784, 796
Eco88I	CYCGRG	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	791
EcoO109I	RGGNCCY	3 cut(s)	582, 784, 796
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	4 cut(s)	302, 699, 742, 769
EcoT38I	GRGCYC	2 cut(s)	585, 593
EgeI	GGCGCC	1 cut(s)	811
EheI	GGCGCC	1 cut(s)	811
FaeI	CATG	1 cut(s)	637
FaiI	YATR	7 cut(s)	29, 579, 635, 659, 777, 865, 867
FaqI	GGGAC	2 cut(s)	679, 797
FatI	CATG	1 cut(s)	633
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	300, 450, 487, 791
FriOI	GRGCYC	2 cut(s)	585, 593
Fsp4HI	GCNGC	4 cut(s)	300, 450, 487, 791
FspBI	CTAG	2 cut(s)	15, 651
GlaI	GCGC	2 cut(s)	553, 811
GluI	GCNGC	4 cut(s)	300, 450, 487, 791
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	8 cut(s)	162, 449, 559, 583, 624, 662, 710, 737
HapII	CCGG	4 cut(s)	174, 542, 663, 780
HhaI	GCGC	2 cut(s)	554, 812
Hin1I	GRCGYC	1 cut(s)	810
Hin1II	CATG	1 cut(s)	637
Hin6I	GCGC	2 cut(s)	552, 810
HinP1I	GCGC	2 cut(s)	552, 810
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	4 cut(s)	174, 542, 663, 780
HphI	GGTGA	2 cut(s)	328, 415
Hpy188I	TCNGA	3 cut(s)	241, 529, 686
Hpy188III	TCNNGA	1 cut(s)	392
Hpy99I	CGWCG	3 cut(s)	299, 620, 632
HpyAV	CCTTC	2 cut(s)	282, 834
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	3 cut(s)	793, 860, 875
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 118, 449, 630, 668, 734, 830
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	618
Hsp92I	GRCGYC	1 cut(s)	810
Hsp92II	CATG	1 cut(s)	637
HspAI	GCGC	2 cut(s)	552, 810
KasI	GGCGCC	1 cut(s)	809
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	147, 761
Lsp1109I	GCAGC	2 cut(s)	498, 777
MaeI	CTAG	2 cut(s)	15, 651
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	43, 206
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	585, 593
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	2 cut(s)	10, 180
MluNI	TGGCCA	1 cut(s)	559
Mly113I	GGCGCC	1 cut(s)	810
MmeI	TCCRAC	3 cut(s)	366, 381, 499
Mox20I	TGGCCA	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	559
Msp20I	TGGCCA	1 cut(s)	559
MspI	CCGG	4 cut(s)	174, 542, 663, 780
MspR9I	CCNGG	8 cut(s)	304, 542, 543, 664, 701, 744, 771, 781
MvaI	CCWGG	4 cut(s)	304, 701, 744, 771
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	7 cut(s)	31, 118, 449, 630, 668, 734, 830
NarI	GGCGCC	1 cut(s)	810
NciI	CCSGG	4 cut(s)	542, 543, 664, 781
NdeII	GATC	1 cut(s)	130
NheI	GCTAGC	1 cut(s)	650
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	7 cut(s)	73, 583, 584, 717, 785, 798, 811
NmeAIII	GCCGAG	3 cut(s)	390, 713, 736
NmuCI	GTSAC	1 cut(s)	43
PasI	CCCWGGG	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	4 cut(s)	301, 451, 488, 792
PluTI	GGCGCC	1 cut(s)	813
PpuMI	RGGWCCY	2 cut(s)	784, 796
Psp5II	RGGWCCY	2 cut(s)	784, 796
Psp6I	CCWGG	4 cut(s)	302, 699, 742, 769
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	4 cut(s)	302, 699, 742, 769
PspN4I	GGNNCC	7 cut(s)	73, 583, 584, 717, 785, 798, 811
PspOMI	GGGCCC	1 cut(s)	581
PspPI	GGNCC	6 cut(s)	161, 581, 582, 622, 784, 796
PspPPI	RGGWCCY	2 cut(s)	784, 796
PstI	CTGCAG	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	706
RsaI	GTAC	2 cut(s)	203, 848
RsaNI	GTAC	2 cut(s)	202, 847
SatI	GCNGC	4 cut(s)	300, 450, 487, 791
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	6 cut(s)	161, 581, 582, 622, 784, 796
ScaI	AGTACT	1 cut(s)	848
ScrFI	CCNGG	8 cut(s)	304, 542, 543, 664, 701, 744, 771, 781
SduI	GDGCHC	2 cut(s)	585, 593
SfcI	CTRYAG	1 cut(s)	791
SfoI	GGCGCC	1 cut(s)	811
SinI	GGWCC	2 cut(s)	784, 796
SmaI	CCCGGG	1 cut(s)	543
Sse9I	AATT	2 cut(s)	10, 180
SsiI	CCGC	3 cut(s)	284, 300, 450
SspDI	GGCGCC	1 cut(s)	809
SspMI	CTAG	2 cut(s)	15, 651
StyD4I	CCNGG	8 cut(s)	302, 540, 541, 662, 699, 742, 769, 779
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	393, 627
TasI	AATT	2 cut(s)	10, 180
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	2 cut(s)	302, 452
TfiI	GAWTC	1 cut(s)	388
TscAI	CASTG	2 cut(s)	26, 554
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	486, 790
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	44, 235, 870
TspGWI	ACGGA	1 cut(s)	283
TspMI	CCCGGG	1 cut(s)	541
TspRI	CASTG	2 cut(s)	26, 554
Van91I	CCANNNNNTGG	1 cut(s)	706
VpaK11BI	GGWCC	2 cut(s)	784, 796
XagI	CCTNNNNNAGG	1 cut(s)	791
XapI	RAATTY	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	3 cut(s)	65, 575, 616
XmaI	CCCGGG	1 cut(s)	541
XspI	CTAG	2 cut(s)	15, 651
ZrmI	AGTACT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.