Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCATTATTGATGGGTTTTTCTCTAGCAAATGTGGCACACATGGGTATTCAAGAAGCTCTTTCCTTCGAGGCAAGAGCTCCAAATTCGCTTACATTTGGGTCTCTTATCTGGGTCGGAAACTCCGAGACCCAGTGCCCTGGTCAATGTGCTTGGCGATTCCATCAGCCAATTTATGGACCACAATATCCAGCTTTGGTTGCACCCAACAACGATGTGGGTGTGGATGGCATGATCATAAACCTGGCTAGCCTTTGGCTGGGTGACCAACCCTTTTGGGAATGGGTTTTATCAGGGTCCCAAAGAGGCTTAGAGGCTGCTTCGGCTTGTCCTGGTGTCTATGGGAAAGGGGCACATCCTGGTTATGCTGGAGACCTATTGGTAGAAGCTACAACTGGTGCTAGCTACAATGCCAATGGTTTTAATGGGAAGAAGTACTTGCTCCCTGCTTTGTTCGATCCCTCAACCTCAACTTGTTCAACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

163

Amino Acids

17.29

Weight (kDa)

4.9

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	176
AclWI	GGATC	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	176, 259
AgsI	TTSAA	2 cut(s)	53, 480
AjnI	CCWGG	4 cut(s)	139, 243, 331, 358
AluBI	AGCT	5 cut(s)	59, 80, 194, 389, 405
AluI	AGCT	5 cut(s)	59, 80, 194, 389, 405
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	3 cut(s)	108, 122, 366
AlwI	GGATC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	179, 297
AsuHPI	GGTGA	1 cut(s)	275
AsuNHI	GCTAGC	2 cut(s)	248, 401
AvaII	GGWCC	2 cut(s)	179, 297
BaeGI	GKGCMC	2 cut(s)	140, 355
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	3 cut(s)	7, 171, 221
BciT130I	CCWGG	4 cut(s)	141, 245, 333, 360
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	108, 122, 366
BfaI	CTAG	3 cut(s)	26, 249, 402
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	4 cut(s)	141, 245, 333, 360
Bme18I	GGWCC	2 cut(s)	179, 297
BmgT120I	GGNCC	2 cut(s)	179, 297
BmiI	GGNNCC	2 cut(s)	298, 299
BmrFI	CCNGG	4 cut(s)	141, 245, 333, 360
BmrI	ACTGGG	1 cut(s)	127
BmtI	GCTAGC	2 cut(s)	252, 405
BmuI	ACTGGG	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	390
BsaI	GGTCTC	3 cut(s)	108, 122, 366
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 259
Bse1I	ACTGG	2 cut(s)	133, 400
BseBI	CCWGG	4 cut(s)	141, 245, 333, 360
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	232, 355
BseLI	CCNNNNNNNGG	2 cut(s)	176, 259
BseNI	ACTGG	2 cut(s)	133, 400
BseSI	GKGCMC	2 cut(s)	140, 355
BseXI	GCAGC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	176, 259
BsmAI	GTCTC	3 cut(s)	108, 122, 366
BsmFI	GGGAC	1 cut(s)	283
Bso31I	GGTCTC	3 cut(s)	108, 122, 366
Bsp1286I	GDGCHC	3 cut(s)	82, 140, 355
Bsp143I	GATC	2 cut(s)	234, 457
BspLI	GGNNCC	2 cut(s)	298, 299
BspOI	GCTAGC	2 cut(s)	252, 405
BspPI	GGATC	1 cut(s)	452
BspTNI	GGTCTC	3 cut(s)	108, 122, 366
BsrI	ACTGG	2 cut(s)	133, 400
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	234, 457
Bst2UI	CCWGG	4 cut(s)	141, 245, 333, 360
BstC8I	GCNNGC	2 cut(s)	250, 403
BstDEI	CTNAG	1 cut(s)	310
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	232, 355
BstKTI	GATC	2 cut(s)	237, 460
BstMAI	GTCTC	3 cut(s)	108, 122, 366
BstMBI	GATC	2 cut(s)	234, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 200, 323
BstNI	CCWGG	4 cut(s)	141, 245, 333, 360
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	4 cut(s)	139, 243, 331, 358
BstSLI	GKGCMC	2 cut(s)	140, 355
BstV1I	GCAGC	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	232, 355
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	250, 403
Cfr13I	GGNCC	2 cut(s)	179, 297
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	2 cut(s)	43, 232
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	2 cut(s)	236, 459
DpnII	GATC	2 cut(s)	234, 457
Ecl136II	GAGCTC	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	3 cut(s)	108, 122, 366
Eco47I	GGWCC	2 cut(s)	179, 297
Eco53kI	GAGCTC	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	4 cut(s)	139, 243, 331, 358
EcoT38I	GRGCYC	1 cut(s)	82
FaeI	CATG	2 cut(s)	46, 235
FaiI	YATR	6 cut(s)	44, 177, 233, 239, 342, 366
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 422, 454
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	42, 231
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	239, 342
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	3 cut(s)	26, 249, 402
GluI	GCNGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	390
Hin1II	CATG	2 cut(s)	46, 235
HinfI	GANTC	1 cut(s)	159
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	119, 127
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 200, 323
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	46, 235
KflI	GGGWCCC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	234, 457
LmnI	GCTCC	2 cut(s)	85, 447
Lsp1109I	GCAGC	1 cut(s)	304
MaeI	CTAG	3 cut(s)	26, 249, 402
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	236, 459
MboI	GATC	2 cut(s)	234, 457
MboII	GAAGA	1 cut(s)	442
MhlI	GDGCHC	3 cut(s)	82, 140, 355
MluCI	AATT	2 cut(s)	85, 171
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	64, 299, 307, 472, 478
MseI	TTAA	1 cut(s)	423
MspR9I	CCNGG	4 cut(s)	141, 245, 333, 360
MvaI	CCWGG	4 cut(s)	141, 245, 333, 360
MwoI	GCNNNNNNNGC	3 cut(s)	35, 200, 323
NdeII	GATC	2 cut(s)	234, 457
NheI	GCTAGC	2 cut(s)	248, 401
NlaIII	CATG	2 cut(s)	46, 235
NlaIV	GGNNCC	2 cut(s)	298, 299
NmuCI	GTSAC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	159
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	4 cut(s)	139, 243, 331, 358
PspEI	GGTNACC	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	4 cut(s)	139, 243, 331, 358
PspN4I	GGNNCC	2 cut(s)	298, 299
PspPI	GGNCC	2 cut(s)	179, 297
PspPPI	RGGWCCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	234, 457
Sau96I	GGNCC	2 cut(s)	179, 297
ScaI	AGTACT	1 cut(s)	437
ScrFI	CCNGG	4 cut(s)	141, 245, 333, 360
SduI	GDGCHC	3 cut(s)	82, 140, 355
SetI	ASST	8 cut(s)	61, 82, 196, 246, 378, 391, 407, 470
SinI	GGWCC	2 cut(s)	179, 297
Sse9I	AATT	2 cut(s)	85, 171
SspMI	CTAG	3 cut(s)	26, 249, 402
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	4 cut(s)	139, 243, 331, 358
TaqI	TCGA	2 cut(s)	69, 456
TasI	AATT	2 cut(s)	85, 171
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	263
TspRI	CASTG	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	179, 297
XapI	RAATTY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	3 cut(s)	26, 249, 402
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.