Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTGGAAATCCATAGAGAAATACTACACCTCTCCAATGCCAAGAAAACCTCATCTATTTCCCTCTCATTGGGTAACCAAATCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGAACACAGATCATACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCTAGCAGATGTGGTACACACGGGTCTTCAAAGAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTCGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGCCCGGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCCAACAATGATGTGGGTTTGGACGGTATGATCATCAATCTAGCTGGCCTTTTGGCGGGGACAGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCCGGTGTCTATGGGAAAGGAGCATATCCTGGTTATGCTGGAGACCTCTTGGTTGATGCTACAACTGGTGCTAGCTACAATGCAAATGGTCTGAGTGGGAAGAAGTACTTGCTTCCTGCTCTGTTTGATCCCTCAACCTCAACTTGTTCGACTCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

227

Amino Acids

23.58

Weight (kDa)

6.87

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	2 cut(s)	157, 338
AfaI	GTAC	2 cut(s)	235, 629
AfiI	CCNNNNNNNGG	4 cut(s)	70, 322, 359, 442
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	2 cut(s)	480, 550
AluBI	AGCT	5 cut(s)	96, 255, 276, 431, 597
AluI	AGCT	5 cut(s)	96, 255, 276, 431, 597
Alw21I	GWGCWC	2 cut(s)	257, 278
Alw26I	GTCTC	2 cut(s)	305, 558
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	157, 338, 433
ApeKI	GCWGC	2 cut(s)	146, 509
AspS9I	GGNCC	2 cut(s)	362, 485
AsuC2I	CCSGG	3 cut(s)	323, 324, 525
AsuNHI	GCTAGC	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	362, 485
BalI	TGGCCA	2 cut(s)	159, 340
BanII	GRGCYC	2 cut(s)	257, 278
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	257, 278
BbvI	GCAGC	2 cut(s)	158, 496
BccI	CCATC	3 cut(s)	179, 203, 354
BciT130I	CCWGG	2 cut(s)	482, 552
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	3 cut(s)	323, 324, 525
BcoDI	GTCTC	2 cut(s)	305, 558
BfaI	CTAG	3 cut(s)	222, 428, 594
BisI	GCNGC	2 cut(s)	147, 510
BlsI	GCNGC	2 cut(s)	148, 511
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	5 cut(s)	323, 324, 482, 525, 552
Bme18I	GGWCC	2 cut(s)	362, 485
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	362, 485
BmiI	GGNNCC	3 cut(s)	486, 487, 498
BmrFI	CCNGG	5 cut(s)	323, 324, 482, 525, 552
BmsI	GCATC	1 cut(s)	568
BmtI	GCTAGC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	4 cut(s)	83, 115, 85, 117
BpmI	CTGGAG	1 cut(s)	582
BpuMI	CCSGG	3 cut(s)	323, 324, 525
BsaI	GGTCTC	2 cut(s)	305, 558
BsaJI	CCNNGG	3 cut(s)	150, 322, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 322, 359, 442
Bse1I	ACTGG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	482, 552
BseDI	CCNNGG	3 cut(s)	150, 322, 481
BseLI	CCNNNNNNNGG	4 cut(s)	70, 322, 359, 442
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	158, 496
BshFI	GGCC	3 cut(s)	159, 340, 435
BsiHKAI	GWGCWC	2 cut(s)	257, 278
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	323, 525
BslFI	GGGAC	4 cut(s)	97, 460, 471, 507
BslI	CCNNNNNNNGG	4 cut(s)	70, 322, 359, 442
BsmAI	GTCTC	2 cut(s)	305, 558
BsmFI	GGGAC	4 cut(s)	97, 460, 471, 507
BsnI	GGCC	3 cut(s)	159, 340, 435
Bso31I	GGTCTC	2 cut(s)	305, 558
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	257, 278
Bsp143I	GATC	3 cut(s)	132, 417, 649
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	3 cut(s)	159, 340, 435
BspCNI	CTCAG	1 cut(s)	606
BspLI	GGNNCC	3 cut(s)	486, 487, 498
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	644
BspTNI	GGTCTC	2 cut(s)	305, 558
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	3 cut(s)	150, 322, 481
BssMI	GATC	3 cut(s)	132, 417, 649
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	482, 552
Bst4CI	ACNGT	3 cut(s)	141, 413, 451
BstC8I	GCNNGC	2 cut(s)	433, 595
BstDEI	CTNAG	1 cut(s)	614
BstEII	GGTNACC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	135, 420, 652
BstMAI	GTCTC	2 cut(s)	305, 558
BstMBI	GATC	3 cut(s)	132, 417, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	2 cut(s)	482, 552
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	5 cut(s)	321, 322, 480, 523, 550
BstV1I	GCAGC	2 cut(s)	158, 496
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	159, 340, 435
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	433, 595
Cfr13I	GGNCC	2 cut(s)	362, 485
Cfr9I	CCCGGG	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	234, 628
CviQI	GTAC	2 cut(s)	234, 628
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	3 cut(s)	134, 419, 651
DpnII	GATC	3 cut(s)	132, 417, 649
EaeI	YGGCCR	2 cut(s)	157, 338
Ecl136II	GAGCTC	2 cut(s)	255, 276
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	2 cut(s)	257, 278
Eco31I	GGTCTC	2 cut(s)	305, 558
Eco47I	GGWCC	2 cut(s)	362, 485
Eco53kI	GAGCTC	2 cut(s)	255, 276
Eco88I	CYCGRG	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	2 cut(s)	255, 276
EcoO109I	RGGNCCY	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	480, 550
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	2 cut(s)	257, 278
ErhI	CCWWGG	1 cut(s)	150
FaiI	YATR	7 cut(s)	15, 137, 416, 534, 547, 558, 682
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	4 cut(s)	97, 460, 471, 507
FauI	CCCGC	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	147, 510
FriOI	GRGCYC	2 cut(s)	257, 278
Fsp4HI	GCNGC	2 cut(s)	147, 510
FspBI	CTAG	3 cut(s)	222, 428, 594
GluI	GCNGC	2 cut(s)	147, 510
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	159, 340, 435
HapII	CCGG	2 cut(s)	323, 525
HinfI	GANTC	1 cut(s)	673
HpaII	CCGG	2 cut(s)	323, 525
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	5 cut(s)	196, 266, 302, 310, 615
Hpy8I	GTNNAC	1 cut(s)	236
HpyCH4III	ACNGT	3 cut(s)	141, 413, 451
HpyCH4V	TGCA	2 cut(s)	386, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	1 cut(s)	614
KflI	GGGWCCC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	132, 417, 649
LmnI	GCTCC	3 cut(s)	281, 502, 542
Lsp1109I	GCAGC	2 cut(s)	158, 496
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	3 cut(s)	222, 428, 594
MaeIII	GTNAC	2 cut(s)	74, 451
MalI	GATC	3 cut(s)	134, 419, 651
MboI	GATC	3 cut(s)	132, 417, 649
MboII	GAAGA	2 cut(s)	237, 634
MhlI	GDGCHC	2 cut(s)	257, 278
MlsI	TGGCCA	2 cut(s)	159, 340
MluCI	AATT	2 cut(s)	204, 354
MluNI	TGGCCA	2 cut(s)	159, 340
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	2 cut(s)	103, 280
Mox20I	TGGCCA	2 cut(s)	159, 340
MscI	TGGCCA	2 cut(s)	159, 340
Msp20I	TGGCCA	2 cut(s)	159, 340
MspI	CCGG	2 cut(s)	323, 525
MspR9I	CCNGG	5 cut(s)	323, 324, 482, 525, 552
MvaI	CCWGG	2 cut(s)	482, 552
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	3 cut(s)	323, 324, 525
NdeII	GATC	3 cut(s)	132, 417, 649
NheI	GCTAGC	1 cut(s)	593
NlaIV	GGNNCC	3 cut(s)	486, 487, 498
NmuCI	GTSAC	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	148, 511
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	485
Psp124BI	GAGCTC	2 cut(s)	257, 278
Psp5II	RGGWCCY	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	480, 550
PspEI	GGTNACC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	480, 550
PspN4I	GGNNCC	3 cut(s)	486, 487, 498
PspPI	GGNCC	2 cut(s)	362, 485
PspPPI	RGGWCCY	1 cut(s)	485
RsaI	GTAC	2 cut(s)	235, 629
RsaNI	GTAC	2 cut(s)	234, 628
SacI	GAGCTC	2 cut(s)	257, 278
SatI	GCNGC	2 cut(s)	147, 510
Sau3AI	GATC	3 cut(s)	132, 417, 649
Sau96I	GGNCC	2 cut(s)	362, 485
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	5 cut(s)	323, 324, 482, 525, 552
SduI	GDGCHC	2 cut(s)	257, 278
SfaNI	GCATC	1 cut(s)	568
SinI	GGWCC	2 cut(s)	362, 485
SmaI	CCCGGG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	204, 354
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	3 cut(s)	222, 428, 594
SstI	GAGCTC	2 cut(s)	257, 278
StyD4I	CCNGG	5 cut(s)	321, 322, 480, 523, 550
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	141, 413, 451
TaqI	TCGA	2 cut(s)	87, 671
TasI	AATT	2 cut(s)	204, 354
TatI	WGTACW	1 cut(s)	627
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	146, 509
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	375
TspMI	CCCGGG	1 cut(s)	322
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	2 cut(s)	362, 485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	322
XspI	CTAG	3 cut(s)	222, 428, 594
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.