FvH4_5g36900

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000422
Physical Location & Seq
Reverse (-)
27023148 .. 27024110
963 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36900.t1

Sequence Viewer

Length: 963 bp
ATGGCTTCTTCCGCTTCCAAACACCTCTTTTCCTTTGTTCTGCTTCTCTCTCTGTTCCATTTTAGCTCAGCAGCTAGGAGCCTTGCTGAGACCTCAGATGAGTCCCAGCAGCCTATACTCTTCCAATACCACAATGGTCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATTTGGTATGGCAAATTCAAGCCTTCCCAGCGTGCAATTGTTTCCGATTTTATCACCTCCCTTTCTTCTTCATCTCCTTCTCCATCTAAAAACCAACCCTCTGTTGCTACATGGTGGAAATTCATAGAGAAATACTACCACCTCGCCAATGCCAAGAAAACCTCATCTCTTTCCCTCTCATTGAGTACCCAAATCCTCGATGAGAGCTACTCTATGGGCAAGTCCCTGTCTCAAACACACATCAAGAAGTTGGCTGCCAAGGGTAGCCAGAGTAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCTAGCAAATGTGGTACACATGGTTCTTCAACGAGCTCTCTCATCAGAGGCAAGAGCACCAAGTTTGCTTACATCTGGGTGGGAAACTCAGAGACCCAATGCCCTGGTCAGTGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCCAACAATGATGTGGGTTTGGACGGTATGATCATCAATCTAGCTAGCCTTTTGGCTGGGACTGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAGGAGGCTCCATTAGAGGCTGCCTCGGCTTGTCCTGGTGTCTATGGGAAAGGAGCTTATCCTGGTTATCCTGGAGACCTCTTGGTTGATGCTACAACTGGTGCCAGCTACAACGCTAATGGTTTGAATGGGAAGAAGTACTTGCTGCCTGCTTTGTTTGACCCCTCAACCTCAACTTGTTCTACTCTTGTTTGA

Protein Analysis

321

Amino Acids

34.07

Weight (kDa)

8.89

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 42 - 319 8.7e-127 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 869
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 2 cut(s) 185, 290
AfaI GTAC 3 cut(s) 358, 514, 908
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 3 cut(s) 190, 528, 895
AjnI CCWGG 5 cut(s) 601, 759, 802, 829, 838
AluBI AGCT 7 cut(s) 66, 74, 378, 534, 710, 824, 876
AluI AGCT 7 cut(s) 66, 74, 378, 534, 710, 824, 876
Alw21I GWGCWC 2 cut(s) 536, 557
Alw26I GTCTC 4 cut(s) 83, 405, 584, 837
AoxI GGCC 1 cut(s) 617
ApeKI GCWGC 5 cut(s) 71, 109, 425, 788, 913
ApoI RAATTY 2 cut(s) 185, 290
AspS9I GGNCC 3 cut(s) 137, 641, 764
AsuHPI GGTGA 1 cut(s) 217
AsuNHI GCTAGC 1 cut(s) 710
AvaII GGWCC 3 cut(s) 137, 641, 764
BalI TGGCCA 1 cut(s) 619
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 1 cut(s) 536
Bbv12I GWGCWC 2 cut(s) 536, 557
BbvI GCAGC 5 cut(s) 83, 121, 412, 775, 900
BccI CCATC 5 cut(s) 170, 262, 458, 482, 633
BciT130I CCWGG 5 cut(s) 603, 761, 804, 831, 840
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 4 cut(s) 83, 405, 584, 837
BfaI CTAG 4 cut(s) 75, 501, 707, 711
BisI GCNGC 5 cut(s) 72, 110, 426, 789, 914
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 5 cut(s) 73, 111, 427, 790, 915
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 5 cut(s) 603, 761, 804, 831, 840
Bme18I GGWCC 3 cut(s) 137, 641, 764
BmgT120I GGNCC 3 cut(s) 137, 641, 764
BmiI GGNNCC 5 cut(s) 80, 765, 766, 777, 871
BmrFI CCNGG 5 cut(s) 603, 761, 804, 831, 840
BmsI GCATC 1 cut(s) 847
BmtI GCTAGC 1 cut(s) 714
BplI GAGNNNNNCTC 4 cut(s) 365, 397, 776, 808
BpmI CTGGAG 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 67
BsaI GGTCTC 3 cut(s) 83, 584, 837
BsaJI CCNNGG 5 cut(s) 429, 601, 760, 768, 792
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse1I ACTGG 2 cut(s) 154, 871
BseBI CCWGG 5 cut(s) 603, 761, 804, 831, 840
BseDI CCNNGG 5 cut(s) 429, 601, 760, 768, 792
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMII CTCAG 4 cut(s) 78, 81, 108, 600
BseNI ACTGG 2 cut(s) 154, 871
BseXI GCAGC 5 cut(s) 83, 121, 412, 775, 900
BseYI CCCAGC 3 cut(s) 105, 198, 722
BshFI GGCC 1 cut(s) 619
BshNI GGYRCC 1 cut(s) 869
BsiHKAI GWGCWC 2 cut(s) 536, 557
BslFI GGGAC 4 cut(s) 88, 379, 739, 750
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 4 cut(s) 83, 405, 584, 837
BsmFI GGGAC 4 cut(s) 88, 379, 739, 750
BsnI GGCC 1 cut(s) 619
Bso31I GGTCTC 3 cut(s) 83, 584, 837
Bsp1286I GDGCHC 2 cut(s) 536, 557
Bsp143I GATC 1 cut(s) 696
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 619
BspCNI CTCAG 4 cut(s) 79, 80, 107, 599
BspLI GGNNCC 5 cut(s) 80, 765, 766, 777, 871
BspOI GCTAGC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 869
BspTNI GGTCTC 3 cut(s) 83, 584, 837
BsrI ACTGG 2 cut(s) 154, 871
BssECI CCNNGG 5 cut(s) 429, 601, 760, 768, 792
BssMI GATC 1 cut(s) 696
BssT1I CCWWGG 2 cut(s) 429, 768
Bst2UI CCWGG 5 cut(s) 603, 761, 804, 831, 840
Bst4CI ACNGT 2 cut(s) 692, 730
Bst6I CTCTTC 2 cut(s) 125, 147
BstC8I GCNNGC 4 cut(s) 204, 712, 874, 918
BstDEI CTNAG 4 cut(s) 67, 87, 94, 586
BstKTI GATC 1 cut(s) 699
BstMAI GTCTC 4 cut(s) 83, 405, 584, 837
BstMBI GATC 1 cut(s) 696
BstMWI GCNNNNNNNGC 3 cut(s) 11, 199, 794
BstNI CCWGG 5 cut(s) 603, 761, 804, 831, 840
BstSCI CCNGG 5 cut(s) 601, 759, 802, 829, 838
BstV1I GCAGC 5 cut(s) 83, 121, 412, 775, 900
BstXI CCANNNNNNTGG 1 cut(s) 602
BsuRI GGCC 1 cut(s) 619
BtsIMutI CAGTG 2 cut(s) 147, 614
Cac8I GCNNGC 4 cut(s) 204, 712, 874, 918
Cfr13I GGNCC 3 cut(s) 137, 641, 764
Csp6I GTAC 3 cut(s) 357, 513, 907
CviAII CATG 2 cut(s) 282, 518
CviQI GTAC 3 cut(s) 357, 513, 907
DdeI CTNAG 4 cut(s) 67, 87, 94, 586
DpnI GATC 1 cut(s) 698
DpnII GATC 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 2 cut(s) 125, 147
EarI CTCTTC 2 cut(s) 125, 147
Ecl136II GAGCTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 429, 768
Eco24I GRGCYC 1 cut(s) 536
Eco31I GGTCTC 3 cut(s) 83, 584, 837
Eco47I GGWCC 3 cut(s) 137, 641, 764
Eco53kI GAGCTC 1 cut(s) 534
EcoICRI GAGCTC 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 764
EcoRII CCWGG 5 cut(s) 601, 759, 802, 829, 838
EcoT14I CCWWGG 2 cut(s) 429, 768
EcoT38I GRGCYC 1 cut(s) 536
ErhI CCWWGG 2 cut(s) 429, 768
FaeI CATG 2 cut(s) 285, 521
FaiI YATR 8 cut(s) 116, 180, 283, 296, 386, 519, 695, 813
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 4 cut(s) 88, 379, 739, 750
FatI CATG 2 cut(s) 281, 517
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 5 cut(s) 72, 110, 426, 789, 914
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 5 cut(s) 72, 110, 426, 789, 914
FspBI CTAG 4 cut(s) 75, 501, 707, 711
GluI GCNGC 5 cut(s) 72, 110, 426, 789, 914
GsaI CCCAGC 3 cut(s) 109, 202, 726
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 1 cut(s) 619
Hin1II CATG 2 cut(s) 285, 521
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 5 cut(s) 97, 217, 475, 545, 589
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 2 cut(s) 204, 258
HpyCH4III ACNGT 2 cut(s) 692, 730
HpyCH4V TGCA 2 cut(s) 206, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 199, 794
HpyF3I CTNAG 4 cut(s) 67, 87, 94, 586
Hsp92II CATG 2 cut(s) 285, 521
KflI GGGWCCC 1 cut(s) 764
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 1 cut(s) 696
LmnI GCTCC 3 cut(s) 78, 781, 821
Lsp1109I GCAGC 5 cut(s) 83, 121, 412, 775, 900
LweI GCATC 1 cut(s) 847
MaeI CTAG 4 cut(s) 75, 501, 707, 711
MaeIII GTNAC 1 cut(s) 730
MalI GATC 1 cut(s) 698
MboI GATC 1 cut(s) 696
MboII GAAGA 6 cut(s) 112, 134, 228, 231, 516, 913
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 536, 557
MlsI TGGCCA 1 cut(s) 619
MluCI AATT 6 cut(s) 166, 185, 207, 290, 483, 633
MluNI TGGCCA 1 cut(s) 619
MlyI GAGTC 1 cut(s) 110
Mox20I TGGCCA 1 cut(s) 619
MscI TGGCCA 1 cut(s) 619
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 619
MspR9I CCNGG 5 cut(s) 603, 761, 804, 831, 840
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 5 cut(s) 603, 761, 804, 831, 840
MwoI GCNNNNNNNGC 3 cut(s) 11, 199, 794
NdeII GATC 1 cut(s) 696
NheI GCTAGC 1 cut(s) 710
NlaIII CATG 2 cut(s) 285, 521
NlaIV GGNNCC 5 cut(s) 80, 765, 766, 777, 871
NmeAIII GCCGAG 1 cut(s) 773
NmuCI GTSAC 1 cut(s) 730
PfoI TCCNGGA 1 cut(s) 838
PkrI GCNGC 5 cut(s) 73, 111, 427, 790, 915
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 5 cut(s) 601, 759, 802, 829, 838
PspFI CCCAGC 3 cut(s) 105, 198, 722
PspGI CCWGG 5 cut(s) 601, 759, 802, 829, 838
PspN4I GGNNCC 5 cut(s) 80, 765, 766, 777, 871
PspPI GGNCC 3 cut(s) 137, 641, 764
PspPPI RGGWCCY 1 cut(s) 764
PsrI GAACNNNNNNTAC 2 cut(s) 505, 537
RsaI GTAC 3 cut(s) 358, 514, 908
RsaNI GTAC 3 cut(s) 357, 513, 907
RseI CAYNNNNRTG 1 cut(s) 575
SacI GAGCTC 1 cut(s) 536
SatI GCNGC 5 cut(s) 72, 110, 426, 789, 914
Sau3AI GATC 1 cut(s) 696
Sau96I GGNCC 3 cut(s) 137, 641, 764
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 5 cut(s) 603, 761, 804, 831, 840
SduI GDGCHC 2 cut(s) 536, 557
SfaNI GCATC 1 cut(s) 847
SinI GGWCC 3 cut(s) 137, 641, 764
SmiMI CAYNNNNRTG 1 cut(s) 575
Sse9I AATT 6 cut(s) 166, 185, 207, 290, 483, 633
SsiI CCGC 1 cut(s) 12
SspMI CTAG 4 cut(s) 75, 501, 707, 711
SstI GAGCTC 1 cut(s) 536
StyD4I CCNGG 5 cut(s) 601, 759, 802, 829, 838
StyI CCWWGG 2 cut(s) 429, 768
TaaI ACNGT 2 cut(s) 692, 730
TaqI TCGA 1 cut(s) 369
TasI AATT 6 cut(s) 166, 185, 207, 290, 483, 633
TatI WGTACW 1 cut(s) 906
TscAI CASTG 2 cut(s) 154, 614
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 5 cut(s) 71, 109, 425, 788, 913
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 2 cut(s) 231, 283
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 2 cut(s) 154, 614
VpaK11BI GGWCC 3 cut(s) 137, 641, 764
XapI RAATTY 2 cut(s) 185, 290
XcmI CCANNNNNNNNNTGG 2 cut(s) 131, 676
XspI CTAG 4 cut(s) 75, 501, 707, 711
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.