RchiOBHm_Chr7g0243461

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000422
Physical Location & Seq
Reverse (-)
69724604 .. 69725506
903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21818

Sequence Viewer

Length: 810 bp
ATGACCATGGCTACTTTTGCTTCCTCATATTTACTTCTACAACTACTAGGAGCCTTGCTGAGACCAGCTCAGACCAAACCCAACAGCCTATACTATTCCAATCCACAATGTGGCCCTCTTCTCACCGGCAAAATATCCATCAATTTAATCTGGTATGGCAAATTCAAGCCCTCCCAGCGCGCAATTGTGTCCGATTTCATCACCTCACTTTCTTCTTCTTCTCCATCTAAACATCAACCCTCTGTTGCTACATGGTTGAAATCCATAGAAAAATACTATTACCTCTCCAATGCCAAGAAAACCTCATCTCTTTCCCTCTCATTGGGTACCCAAATCCTCGATGAAAGCTACTCTCTGGGCAAGTCGGAGGCCACTGGTGGCCAGAGTAATGCCATCAATGTTGTCTTGACCTCATCAGATGTCATTATTGATGGGTTTTTCTCTAGCAAATGTGGCACACATGGGTATTCAAGAAGCTCTTTCCTTCGAGGCAAGAGCTCCAAATTCGCTTACATTTGGGTCTCAAGAGTTAGCTTACATCTGGGTCGGAAACTCCGAGACCCAGTGCCCTGGTCAATGTGCTTGGCGATTCCATCAGCCAATTTATGGACCACAATATCCAGCTTTGGCTGGGCTGCTTCGGCTTGTCCTGGTGTCTATGGGAAAGGGGCACATCCTGATTATGCTGGAGACCTATTGGTAGACGCTACAACTGGCGCTAGCTACAATGCCAATGGTTTTAATGGGAAGAAGTACTTGCTCCCTGCTTTGTTCGATCCCTCAACCTCAACTTGTTCAACTCTTGTTTGA

Protein Analysis

269

Amino Acids

28.97

Weight (kDa)

9.48

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 38 - 176 2.8e-34 Phosphate-induced protein 1 conserved region
Phi_1 PF04674 212 - 268 4.2e-22 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 2 cut(s) 110, 606
AccI GTMKAC 1 cut(s) 702
AccII CGCG 1 cut(s) 180
AclWI GGATC 1 cut(s) 770
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 2 cut(s) 161, 503
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 2 cut(s) 328, 755
AfiI CCNNNNNNNGG 3 cut(s) 110, 322, 606
AgsI TTSAA 4 cut(s) 166, 259, 471, 798
AjnI CCWGG 2 cut(s) 569, 649
AluBI AGCT 7 cut(s) 68, 348, 477, 498, 534, 624, 723
AluI AGCT 7 cut(s) 68, 348, 477, 498, 534, 624, 723
Alw21I GWGCWC 1 cut(s) 500
Alw26I GTCTC 4 cut(s) 55, 526, 552, 684
AlwI GGATC 1 cut(s) 770
AoxI GGCC 3 cut(s) 112, 369, 379
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 2 cut(s) 161, 503
Asp718I GGTACC 1 cut(s) 326
AspLEI GCGC 3 cut(s) 180, 182, 719
AspS9I GGNCC 2 cut(s) 113, 609
AsuHPI GGTGA 2 cut(s) 115, 193
AsuNHI GCTAGC 1 cut(s) 719
AvaII GGWCC 1 cut(s) 609
BaeGI GKGCMC 2 cut(s) 570, 673
BalI TGGCCA 1 cut(s) 381
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 1 cut(s) 622
BccI CCATC 5 cut(s) 146, 232, 401, 425, 601
BciT130I CCWGG 2 cut(s) 571, 651
BcoDI GTCTC 4 cut(s) 55, 526, 552, 684
BfaI CTAG 3 cut(s) 47, 444, 720
BfoI RGCGCY 1 cut(s) 720
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
BmcAI AGTACT 1 cut(s) 755
Bme1390I CCNGG 2 cut(s) 571, 651
Bme18I GGWCC 1 cut(s) 609
BmgT120I GGNCC 2 cut(s) 113, 609
BmiI GGNNCC 2 cut(s) 52, 328
BmrFI CCNGG 2 cut(s) 571, 651
BmrI ACTGGG 1 cut(s) 557
BmtI GCTAGC 1 cut(s) 723
BmuI ACTGGG 1 cut(s) 557
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BpmI CTGGAG 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 508
BsaI GGTCTC 4 cut(s) 55, 526, 552, 684
BsaJI CCNNGG 2 cut(s) 6, 569
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 322, 606
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 379, 563, 718
BseBI CCWGG 2 cut(s) 571, 651
BseDI CCNNGG 2 cut(s) 6, 569
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 3 cut(s) 110, 322, 606
BseMII CTCAG 2 cut(s) 50, 83
BseNI ACTGG 3 cut(s) 379, 563, 718
BsePI GCGCGC 1 cut(s) 178
BseSI GKGCMC 2 cut(s) 570, 673
BseXI GCAGC 1 cut(s) 622
BseYI CCCAGC 2 cut(s) 174, 630
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 114, 371, 381
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 500
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 3 cut(s) 110, 322, 606
BsmAI GTCTC 4 cut(s) 55, 526, 552, 684
BsnI GGCC 3 cut(s) 114, 371, 381
Bso31I GGTCTC 4 cut(s) 55, 526, 552, 684
Bsp1286I GDGCHC 3 cut(s) 500, 570, 673
Bsp143I GATC 1 cut(s) 775
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 3 cut(s) 114, 371, 381
BspCNI CTCAG 2 cut(s) 51, 82
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 52, 328
BspOI GCTAGC 1 cut(s) 723
BspPI GGATC 1 cut(s) 770
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 4 cut(s) 55, 526, 552, 684
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 3 cut(s) 379, 563, 718
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 6, 569
BssHII GCGCGC 1 cut(s) 178
BssMI GATC 1 cut(s) 775
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 571, 651
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 180, 721
BstDEI CTNAG 2 cut(s) 59, 69
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 3 cut(s) 180, 182, 719
BstKTI GATC 1 cut(s) 778
BstMAI GTCTC 4 cut(s) 55, 526, 552, 684
BstMBI GATC 1 cut(s) 775
BstMWI GCNNNNNNNGC 4 cut(s) 17, 175, 453, 641
BstNI CCWGG 2 cut(s) 571, 651
BstSCI CCNGG 2 cut(s) 569, 649
BstSLI GKGCMC 2 cut(s) 570, 673
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 622
BstXI CCANNNNNNTGG 1 cut(s) 570
BsuRI GGCC 3 cut(s) 114, 371, 381
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 372, 570
Cac8I GCNNGC 2 cut(s) 180, 721
CfoI GCGC 3 cut(s) 180, 182, 719
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 113, 609
CseI GACGC 1 cut(s) 713
Csp6I GTAC 2 cut(s) 327, 754
CviAII CATG 3 cut(s) 7, 252, 461
CviQI GTAC 2 cut(s) 327, 754
DdeI CTNAG 2 cut(s) 59, 69
DpnI GATC 1 cut(s) 777
DpnII GATC 1 cut(s) 775
DraIII CACNNNGTG 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 500
Eco31I GGTCTC 4 cut(s) 55, 526, 552, 684
Eco47I GGWCC 1 cut(s) 609
Eco53kI GAGCTC 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 569, 649
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 3 cut(s) 10, 255, 464
FalI AAGNNNNNCTT 4 cut(s) 463, 495, 740, 772
FatI CATG 3 cut(s) 6, 251, 460
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 1 cut(s) 636
FokI GGATG 1 cut(s) 660
FriOI GRGCYC 1 cut(s) 500
Fsp4HI GCNGC 1 cut(s) 636
FspBI CTAG 3 cut(s) 47, 444, 720
GlaI GCGC 3 cut(s) 179, 181, 718
GluI GCNGC 1 cut(s) 636
GsaI CCCAGC 2 cut(s) 178, 634
GsuI CTGGAG 1 cut(s) 708
HaeII RGCGCY 1 cut(s) 720
HaeIII GGCC 3 cut(s) 114, 371, 381
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 713
HhaI GCGC 3 cut(s) 180, 182, 719
Hin1II CATG 3 cut(s) 10, 255, 464
Hin6I GCGC 3 cut(s) 178, 180, 717
HinP1I GCGC 3 cut(s) 178, 180, 717
HinfI GANTC 1 cut(s) 589
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 115, 193
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 6 cut(s) 72, 193, 367, 418, 549, 557
Hpy188III TCNNGA 4 cut(s) 406, 471, 525, 677
Hpy8I GTNNAC 1 cut(s) 703
HpyAV CCTTC 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 175, 453, 641
HpyF3I CTNAG 2 cut(s) 59, 69
Hsp92II CATG 3 cut(s) 10, 255, 464
HspAI GCGC 3 cut(s) 178, 180, 717
KpnI GGTACC 1 cut(s) 330
Kzo9I GATC 1 cut(s) 775
LmnI GCTCC 3 cut(s) 50, 503, 765
Lsp1109I GCAGC 1 cut(s) 622
MaeI CTAG 3 cut(s) 47, 444, 720
MalI GATC 1 cut(s) 777
MboI GATC 1 cut(s) 775
MboII GAAGA 5 cut(s) 110, 204, 207, 210, 760
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 3 cut(s) 500, 570, 673
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 5 cut(s) 142, 161, 183, 503, 601
MluNI TGGCCA 1 cut(s) 381
MmeI TCCRAC 2 cut(s) 345, 527
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
MseI TTAA 2 cut(s) 146, 741
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 571, 651
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 2 cut(s) 571, 651
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 4 cut(s) 17, 175, 453, 641
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 775
NheI GCTAGC 1 cut(s) 719
NlaIII CATG 3 cut(s) 10, 255, 464
NlaIV GGNNCC 2 cut(s) 52, 328
PauI GCGCGC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 553
PfeI GAWTC 1 cut(s) 589
PflMI CCANNNNNTGG 2 cut(s) 110, 606
PkrI GCNGC 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 569, 649
PspFI CCCAGC 2 cut(s) 174, 630
PspGI CCWGG 2 cut(s) 569, 649
PspN4I GGNNCC 2 cut(s) 52, 328
PspPI GGNCC 2 cut(s) 113, 609
PteI GCGCGC 1 cut(s) 178
RsaI GTAC 2 cut(s) 328, 755
RsaNI GTAC 2 cut(s) 327, 754
SacI GAGCTC 1 cut(s) 500
SaqAI TTAA 2 cut(s) 146, 741
SatI GCNGC 1 cut(s) 636
Sau3AI GATC 1 cut(s) 775
Sau96I GGNCC 2 cut(s) 113, 609
ScaI AGTACT 1 cut(s) 755
ScrFI CCNGG 2 cut(s) 571, 651
SduI GDGCHC 3 cut(s) 500, 570, 673
SinI GGWCC 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 5 cut(s) 142, 161, 183, 503, 601
SspMI CTAG 3 cut(s) 47, 444, 720
SstI GAGCTC 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 569, 649
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 3 cut(s) 339, 487, 774
TasI AATT 5 cut(s) 142, 161, 183, 503, 601
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 2 cut(s) 146, 741
Tru9I TTAA 2 cut(s) 146, 741
TscAI CASTG 2 cut(s) 379, 570
TseI GCWGC 1 cut(s) 635
TspDTI ATGAA 2 cut(s) 187, 357
TspRI CASTG 2 cut(s) 379, 570
Van91I CCANNNNNTGG 2 cut(s) 110, 606
VpaK11BI GGWCC 1 cut(s) 609
XapI RAATTY 2 cut(s) 161, 503
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 3 cut(s) 47, 444, 720
ZrmI AGTACT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.