Rw7G039580

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000422
Physical Location & Seq
Reverse (-)
60957971 .. 60959071
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039580.1

Sequence Viewer

Length: 963 bp
ATGGTTTCTTCTTCTTCCAAACAAGTCTTTTCCTTTGTTCTGCTCCTCTCTCTGTTCCATTTTAGCTCAGCAGCTAGGAGCCTTGCTGAGACCAACTCAGATCAAACCCAACAGCCTATACTCTTCCAATACCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGCAAATTCAAGCCTTCCCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAGAAATACTACCACCTCTCCAATGCCAAGAAAACCTCATCTATTTCCCTCTCATTGGGTAACCAAATCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGAACACAGATCATACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCTAGCAGATGTGGTACACACGGGTCTTCAAAGAGCTCTTTGATCAGAGGCAAGAGCTCCAAGTTCGCTTACATCTGGGTCGGAAACTCTGAGACCCAATGCCCGGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCCAACAATGATGTGGGTTTGGACGGTATGATCATCAATCTAGCTGGCCTTTTGGCGGGGACAGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCAATTAGAGGCTGCTTCGGCTTGTCCCGGTGTCTATGGGAAAGGAGCATATCCTGGTTATGCTGGAGATCTCTTGGTTGATTCTACAACTGGTGCTAGCTACAATGCAAATGGTCTGAGTGGGAAGAAGTACTTGCTTCCTGCTCTGTTTGATCCCTCAACCTCAACTTGTTCGACTCTTGTATGA

Protein Analysis

320

Amino Acids

33.92

Weight (kDa)

8.79

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 43 - 319 7e-123 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 1 cut(s) 722
AclWI GGATC 1 cut(s) 923
AcoI YGGCCR 2 cut(s) 436, 617
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 2 cut(s) 514, 908
AfiI CCNNNNNNNGG 4 cut(s) 349, 601, 638, 721
AgsI TTSAA 2 cut(s) 193, 528
AjnI CCWGG 2 cut(s) 759, 829
AluBI AGCT 7 cut(s) 66, 74, 375, 534, 555, 710, 876
AluI AGCT 7 cut(s) 66, 74, 375, 534, 555, 710, 876
Alw21I GWGCWC 2 cut(s) 536, 557
Alw26I GTCTC 2 cut(s) 83, 584
AlwI GGATC 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 601
AoxI GGCC 4 cut(s) 139, 436, 617, 712
ApeKI GCWGC 3 cut(s) 71, 425, 788
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 2 cut(s) 207, 209
AspS9I GGNCC 3 cut(s) 140, 641, 764
AsuC2I CCSGG 3 cut(s) 602, 603, 804
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 872
AvaI CYCGRG 1 cut(s) 601
AvaII GGWCC 2 cut(s) 641, 764
BalI TGGCCA 2 cut(s) 438, 619
BanII GRGCYC 2 cut(s) 536, 557
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 536, 557
BbvI GCAGC 3 cut(s) 83, 437, 775
BccI CCATC 6 cut(s) 173, 259, 274, 458, 482, 633
BciT130I CCWGG 2 cut(s) 761, 831
BclI TGATCA 2 cut(s) 540, 696
BcnI CCSGG 3 cut(s) 602, 603, 804
BcoDI GTCTC 2 cut(s) 83, 584
BfaI CTAG 4 cut(s) 75, 501, 707, 873
BglII AGATCT 1 cut(s) 844
BisI GCNGC 3 cut(s) 72, 426, 789
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 73, 427, 790
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 5 cut(s) 602, 603, 761, 804, 831
Bme18I GGWCC 2 cut(s) 641, 764
BmeT110I CYCGRG 1 cut(s) 601
BmgT120I GGNCC 3 cut(s) 140, 641, 764
BmiI GGNNCC 3 cut(s) 80, 765, 766
BmrFI CCNGG 5 cut(s) 602, 603, 761, 804, 831
BmtI GCTAGC 1 cut(s) 876
BpiI GAAGAC 1 cut(s) 516
BplI GAGNNNNNCTC 6 cut(s) 80, 112, 362, 394, 364, 396
BpmI CTGGAG 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 3 cut(s) 602, 603, 804
BsaI GGTCTC 2 cut(s) 83, 584
BsaJI CCNNGG 3 cut(s) 429, 601, 760
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 349, 601, 638, 721
Bse1I ACTGG 2 cut(s) 157, 871
BseBI CCWGG 2 cut(s) 761, 831
BseDI CCNNGG 3 cut(s) 429, 601, 760
BseLI CCNNNNNNNGG 4 cut(s) 349, 601, 638, 721
BseMII CTCAG 5 cut(s) 78, 81, 111, 579, 884
BseNI ACTGG 2 cut(s) 157, 871
BsePI GCGCGC 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 3 cut(s) 83, 437, 775
BseYI CCCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 4 cut(s) 141, 438, 619, 714
BsiHKAI GWGCWC 2 cut(s) 536, 557
BsiHKCI CYCGRG 1 cut(s) 601
BsiSI CCGG 2 cut(s) 602, 804
BslFI GGGAC 4 cut(s) 376, 739, 750, 786
BslI CCNNNNNNNGG 4 cut(s) 349, 601, 638, 721
BsmAI GTCTC 2 cut(s) 83, 584
BsmFI GGGAC 4 cut(s) 376, 739, 750, 786
BsnI GGCC 4 cut(s) 141, 438, 619, 714
Bso31I GGTCTC 2 cut(s) 83, 584
BsoBI CYCGRG 1 cut(s) 601
Bsp1286I GDGCHC 2 cut(s) 536, 557
Bsp143I GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 1 cut(s) 722
BspANI GGCC 4 cut(s) 141, 438, 619, 714
BspCNI CTCAG 5 cut(s) 79, 80, 110, 580, 885
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 3 cut(s) 80, 765, 766
BspOI GCTAGC 1 cut(s) 876
BspPI GGATC 1 cut(s) 923
BspTNI GGTCTC 2 cut(s) 83, 584
BsrI ACTGG 2 cut(s) 157, 871
BssECI CCNNGG 3 cut(s) 429, 601, 760
BssHII GCGCGC 1 cut(s) 205
BssMI GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 761, 831
Bst4CI ACNGT 3 cut(s) 420, 692, 730
Bst6I CTCTTC 2 cut(s) 128, 150
BstC8I GCNNGC 3 cut(s) 207, 712, 874
BstDEI CTNAG 5 cut(s) 67, 87, 97, 588, 893
BstEII GGTNACC 1 cut(s) 353
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 207, 209
BstKTI GATC 7 cut(s) 103, 177, 414, 543, 699, 847, 931
BstMAI GTCTC 2 cut(s) 83, 584
BstMBI GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
BstMWI GCNNNNNNNGC 2 cut(s) 202, 794
BstNI CCWGG 2 cut(s) 761, 831
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 5 cut(s) 600, 601, 759, 802, 829
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 83, 437, 775
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
BsuRI GGCC 4 cut(s) 141, 438, 619, 714
BtsIMutI CAGTG 2 cut(s) 150, 735
Cac8I GCNNGC 3 cut(s) 207, 712, 874
CfoI GCGC 2 cut(s) 207, 209
Cfr13I GGNCC 3 cut(s) 140, 641, 764
Cfr9I CCCGGG 1 cut(s) 601
Csp6I GTAC 2 cut(s) 513, 907
CviAII CATG 1 cut(s) 279
CviQI GTAC 2 cut(s) 513, 907
DdeI CTNAG 5 cut(s) 67, 87, 97, 588, 893
DpnI GATC 7 cut(s) 102, 176, 413, 542, 698, 846, 930
DpnII GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
EaeI YGGCCR 2 cut(s) 436, 617
Eam1104I CTCTTC 2 cut(s) 128, 150
EarI CTCTTC 2 cut(s) 128, 150
Ecl136II GAGCTC 2 cut(s) 534, 555
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 2 cut(s) 536, 557
Eco31I GGTCTC 2 cut(s) 83, 584
Eco47I GGWCC 2 cut(s) 641, 764
Eco53kI GAGCTC 2 cut(s) 534, 555
Eco88I CYCGRG 1 cut(s) 601
Eco91I GGTNACC 1 cut(s) 353
EcoICRI GAGCTC 2 cut(s) 534, 555
EcoO109I RGGNCCY 1 cut(s) 764
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 759, 829
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 2 cut(s) 536, 557
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 1 cut(s) 282
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 4 cut(s) 376, 739, 750, 786
FatI CATG 1 cut(s) 278
FauI CCCGC 1 cut(s) 715
FbaI TGATCA 2 cut(s) 540, 696
Fnu4HI GCNGC 3 cut(s) 72, 426, 789
FriOI GRGCYC 2 cut(s) 536, 557
Fsp4HI GCNGC 3 cut(s) 72, 426, 789
FspBI CTAG 4 cut(s) 75, 501, 707, 873
GlaI GCGC 2 cut(s) 206, 208
GluI GCNGC 3 cut(s) 72, 426, 789
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 4 cut(s) 141, 438, 619, 714
HapII CCGG 2 cut(s) 602, 804
HhaI GCGC 2 cut(s) 207, 209
Hin1II CATG 1 cut(s) 282
Hin6I GCGC 2 cut(s) 205, 207
HinP1I GCGC 2 cut(s) 205, 207
HinfI GANTC 2 cut(s) 857, 952
HpaII CCGG 2 cut(s) 602, 804
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 7 cut(s) 100, 220, 475, 545, 581, 589, 894
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 420, 692, 730
HpyCH4V TGCA 2 cut(s) 665, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 794
HpyF3I CTNAG 5 cut(s) 67, 87, 97, 588, 893
Hsp92II CATG 1 cut(s) 282
HspAI GCGC 2 cut(s) 205, 207
KflI GGGWCCC 1 cut(s) 764
Ksp22I TGATCA 2 cut(s) 540, 696
Kzo9I GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
LmnI GCTCC 4 cut(s) 48, 78, 560, 821
Lsp1109I GCAGC 3 cut(s) 83, 437, 775
MaeI CTAG 4 cut(s) 75, 501, 707, 873
MaeIII GTNAC 2 cut(s) 353, 730
MalI GATC 7 cut(s) 102, 176, 413, 542, 698, 846, 930
MboI GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
MboII GAAGA 7 cut(s) 3, 6, 115, 137, 237, 516, 913
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 2 cut(s) 536, 557
MlsI TGGCCA 2 cut(s) 438, 619
MluCI AATT 6 cut(s) 169, 188, 210, 483, 633, 779
MluNI TGGCCA 2 cut(s) 438, 619
MlyI GAGTC 1 cut(s) 946
MmeI TCCRAC 2 cut(s) 382, 559
Mox20I TGGCCA 2 cut(s) 438, 619
MscI TGGCCA 2 cut(s) 438, 619
Msp20I TGGCCA 2 cut(s) 438, 619
MspI CCGG 2 cut(s) 602, 804
MspR9I CCNGG 5 cut(s) 602, 603, 761, 804, 831
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 2 cut(s) 761, 831
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 202, 794
NciI CCSGG 3 cut(s) 602, 603, 804
NdeII GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
NheI GCTAGC 1 cut(s) 872
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 3 cut(s) 80, 765, 766
NmuCI GTSAC 1 cut(s) 730
PauI GCGCGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 857
PkrI GCNGC 3 cut(s) 73, 427, 790
PleI GAGTC 1 cut(s) 946
PpsI GAGTC 1 cut(s) 946
PpuMI RGGWCCY 1 cut(s) 764
Psp124BI GAGCTC 2 cut(s) 536, 557
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 759, 829
PspEI GGTNACC 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 2 cut(s) 759, 829
PspN4I GGNNCC 3 cut(s) 80, 765, 766
PspPI GGNCC 3 cut(s) 140, 641, 764
PspPPI RGGWCCY 1 cut(s) 764
PsuI RGATCY 1 cut(s) 844
PteI GCGCGC 1 cut(s) 205
RsaI GTAC 2 cut(s) 514, 908
RsaNI GTAC 2 cut(s) 513, 907
SacI GAGCTC 2 cut(s) 536, 557
SatI GCNGC 3 cut(s) 72, 426, 789
Sau3AI GATC 7 cut(s) 100, 174, 411, 540, 696, 844, 928
Sau96I GGNCC 3 cut(s) 140, 641, 764
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 1 cut(s) 946
ScrFI CCNGG 5 cut(s) 602, 603, 761, 804, 831
SduI GDGCHC 2 cut(s) 536, 557
SinI GGWCC 2 cut(s) 641, 764
SmaI CCCGGG 1 cut(s) 603
Sse9I AATT 6 cut(s) 169, 188, 210, 483, 633, 779
SsiI CCGC 1 cut(s) 722
SspMI CTAG 4 cut(s) 75, 501, 707, 873
SstI GAGCTC 2 cut(s) 536, 557
StyD4I CCNGG 5 cut(s) 600, 601, 759, 802, 829
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 420, 692, 730
TaqI TCGA 2 cut(s) 366, 950
TasI AATT 6 cut(s) 169, 188, 210, 483, 633, 779
TatI WGTACW 1 cut(s) 906
TfiI GAWTC 1 cut(s) 857
TscAI CASTG 2 cut(s) 157, 735
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 3 cut(s) 71, 425, 788
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 654
TspMI CCCGGG 1 cut(s) 601
TspRI CASTG 2 cut(s) 157, 735
VpaK11BI GGWCC 2 cut(s) 641, 764
XapI RAATTY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 2 cut(s) 134, 676
XmaI CCCGGG 1 cut(s) 601
XspI CTAG 4 cut(s) 75, 501, 707, 873
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.