Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

23450060 .. 23450530

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1186300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAACTCGTGCGGAACCCATGAATCATCCAACGACGGTAGTCAAATCAGAGGATCAAAAACCAACAAGTTTGCTTACATTTGGGTCGGAAACTTAGAGACCCAATGCCCAGGGCAATGCGTATGGCCGTTCCACCAGCCCATTTATGGACCCCAGAGCCCACCCCTCGTGGCCCCCAACATCGACGTGGGCCTGGATGACATGGTGATCAACCTGGCTAGTCTTTTGGCGGGGATCGTGACCAACCCTTTCGGAAACGGCTACTTCCAGGGTTCGAAGGACGCTCCTTTGGAAGCTTCTTCTGCTTGCCCTGGGGTCTACGGTAAAGGGTCCTACCCTGGTTACGCAGAAGACCTACTAATGGACCCCACAATCGGAGTTAGCTATAATGCTCATGGATATAACGGGAAGAAGTACTTGCTTCCTGCTTTGTATGACCCCTCAAGTTCAACTTGTTCTACTTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

157

Amino Acids

16.56

Weight (kDa)

4.86

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	1 - 155	1.3e-68	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	2 cut(s)	12, 230
AclWI	GGATC	2 cut(s)	61, 242
AcoI	YGGCCR	1 cut(s)	125
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	146, 361, 374
AgsI	TTSAA	1 cut(s)	450
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	6 cut(s)	109, 192, 213, 267, 310, 337
AluBI	AGCT	2 cut(s)	296, 384
AluI	AGCT	2 cut(s)	296, 384
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	61, 242
AoxI	GGCC	3 cut(s)	125, 171, 190
AspS9I	GGNCC	5 cut(s)	149, 172, 190, 330, 364
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	275
AvaII	GGWCC	3 cut(s)	149, 330, 364
BanII	GRGCYC	1 cut(s)	161
BauI	CACGAG	2 cut(s)	7, 167
BbsI	GAAGAC	1 cut(s)	357
BceAI	ACGGC	2 cut(s)	112, 274
BciT130I	CCWGG	6 cut(s)	111, 194, 215, 269, 312, 339
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	219
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	6 cut(s)	111, 194, 215, 269, 312, 339
Bme18I	GGWCC	3 cut(s)	149, 330, 364
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	5 cut(s)	149, 172, 190, 330, 364
BmiI	GGNNCC	5 cut(s)	16, 151, 174, 331, 366
BmrFI	CCNGG	6 cut(s)	111, 194, 215, 269, 312, 339
BoxI	GACNNNNGTC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	6 cut(s)	109, 110, 268, 310, 311, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 361, 374
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	6 cut(s)	111, 194, 215, 269, 312, 339
BseDI	CCNNGG	6 cut(s)	109, 110, 268, 310, 311, 337
BseGI	GGATG	2 cut(s)	26, 202
BseLI	CCNNNNNNNGG	3 cut(s)	146, 361, 374
BseMI	GCAATG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	127, 173, 192
BslI	CCNNNNNNNGG	3 cut(s)	146, 361, 374
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	127, 173, 192
Bso31I	GGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	53, 207, 234
BspACI	CCGC	2 cut(s)	12, 230
BspANI	GGCC	3 cut(s)	127, 173, 192
BspLI	GGNNCC	5 cut(s)	16, 151, 174, 331, 366
BspPI	GGATC	2 cut(s)	61, 242
BspT104I	TTCGAA	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	122
BssECI	CCNNGG	6 cut(s)	109, 110, 268, 310, 311, 337
BssMI	GATC	3 cut(s)	53, 207, 234
BssSI	CACGAG	2 cut(s)	7, 167
Bst2BI	CACGAG	2 cut(s)	7, 167
Bst2UI	CCWGG	6 cut(s)	111, 194, 215, 269, 312, 339
Bst4CI	ACNGT	2 cut(s)	38, 323
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	26, 202
BstKTI	GATC	3 cut(s)	56, 210, 237
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	53, 207, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	6 cut(s)	111, 194, 215, 269, 312, 339
BstPAI	GACNNNNGTC	1 cut(s)	39
BstSCI	CCNGG	6 cut(s)	109, 192, 213, 267, 310, 337
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	127, 173, 192
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	26, 202
Cac8I	GCNNGC	1 cut(s)	307
Cfr13I	GGNCC	5 cut(s)	149, 172, 190, 330, 364
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	3 cut(s)	20, 202, 395
CviJI	RGCY	9 cut(s)	127, 139, 159, 173, 192, 218, 261, 296, 384
CviKI_1	RGCY	9 cut(s)	127, 139, 159, 173, 192, 218, 261, 296, 384
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	3 cut(s)	55, 209, 236
DpnII	GATC	3 cut(s)	53, 207, 234
EaeI	YGGCCR	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	3 cut(s)	149, 330, 364
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	6 cut(s)	109, 192, 213, 267, 310, 337
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	3 cut(s)	23, 205, 398
FaiI	YATR	8 cut(s)	21, 124, 147, 203, 387, 396, 402, 435
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 436, 468
FatI	CATG	3 cut(s)	19, 201, 394
FauI	CCCGC	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	318
FokI	GGATG	2 cut(s)	13, 209
FriOI	GRGCYC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	127, 173, 192
HgaI	GACGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	23, 205, 398
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	50, 89, 254, 377
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	2 cut(s)	38, 188
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	38, 323
HpyCH4IV	ACGT	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	23, 205, 398
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	53, 207, 234
LmnI	GCTCC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	238, 341
MalI	GATC	3 cut(s)	55, 209, 236
MboI	GATC	3 cut(s)	53, 207, 234
MboII	GAAGA	3 cut(s)	291, 362, 421
MhlI	GDGCHC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	54, 67
MnlI	CCTC	3 cut(s)	44, 176, 451
MslI	CAYNNNNRTG	1 cut(s)	185
MspR9I	CCNGG	6 cut(s)	111, 194, 215, 269, 312, 339
MvaI	CCWGG	6 cut(s)	111, 194, 215, 269, 312, 339
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	3 cut(s)	53, 207, 234
NlaIII	CATG	3 cut(s)	23, 205, 398
NlaIV	GGNNCC	5 cut(s)	16, 151, 174, 331, 366
NmuCI	GTSAC	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	275
PasI	CCCWGGG	2 cut(s)	110, 311
PfeI	GAWTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	6 cut(s)	109, 192, 213, 267, 310, 337
PspGI	CCWGG	6 cut(s)	109, 192, 213, 267, 310, 337
PspN4I	GGNNCC	5 cut(s)	16, 151, 174, 331, 366
PspPI	GGNCC	5 cut(s)	149, 172, 190, 330, 364
PspPPI	RGGWCCY	1 cut(s)	330
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	185
Sau3AI	GATC	3 cut(s)	53, 207, 234
Sau96I	GGNCC	5 cut(s)	149, 172, 190, 330, 364
ScaI	AGTACT	1 cut(s)	416
ScrFI	CCNGG	6 cut(s)	111, 194, 215, 269, 312, 339
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	189, 216, 298, 357, 386
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	3 cut(s)	149, 330, 364
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
SsiI	CCGC	2 cut(s)	12, 230
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	6 cut(s)	109, 192, 213, 267, 310, 337
TaaI	ACNGT	2 cut(s)	38, 323
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	183, 275
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	17, 36
VpaK11BI	GGWCC	3 cut(s)	149, 330, 364
XcmI	CCANNNNNNNNNTGG	2 cut(s)	143, 184
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.