Rmu_sc0009153.1_g000001

Phosphate-induced protein 1 conserved region

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009153.1
Physical Location & Seq
Forward (+)
586 .. 1575
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009153.1_g000001.1.cds

Sequence Viewer

Length: 990 bp
atggcttcttcttctttttcatcaacccagttgatactctcactcttcttagtggtctcactcttccaagtttcactggcttcttctaggttgttccaagtctccttggcaacaaggaggctcagtgagcttgtccaagaccagtcccagcttcttaagtaccataacggtcctcttctcaacggcaaaatcgccatcaatctcatctggtacggcaacttcaagcctgcccagaaagccattgtttccgatttcatcacctccttatcttcttcctcaccggtccaatcaaacaagccctccgtcgccacctggtggaagaccaccgagaagtactaccacctcacctccaagaagtcctctctttcccttgctctcgggaaacaaatttccgacgagaaatactcgctcggaaagtcgctcaccaacaaacagattgtaaagttggcttctctgggtgaccagaagaacgcaatcaacgtggtcttgacttcagccgatgttgccgtcgacgggttctgcatgaaccgatgcggcacccacggggctgcttcgggctcatctcacatccgaggcaagaactacaagttcgcttacatttgggtcggaaactctgagacccagtgcccgggactctgcgcctggcccttccaccagcccctctacggcccacagagcccaccgctcgttgcacccaacaacgacgtcggcctcgacggcatggtcatcaacttggcgagcctcttggccggaacagcaaccaaccctttcggaaatgggtacttccagggtccggcggaggctccattggaggctgcttcggcttgtcccggagtttatgctaagggggcttatcccggttacgccggagacctcttggtggatgctacgactggtgcgagctacaatgccaatggcgccaatggaaggaagtacttggttcctgctctgtttgatccatctacctcaacctgttccactctggtctag

Protein Analysis

329

Amino Acids

34.96

Weight (kDa)

9.1

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
AatII GACGTC 1 cut(s) 708
AccB1I GGYRCC 2 cut(s) 536, 917
AccB7I CCANNNNNTGG 1 cut(s) 315
AccBSI CCGCTC 1 cut(s) 685
AccI GTMKAC 1 cut(s) 510
AciI CCGC 3 cut(s) 534, 683, 797
AclWI GGATC 1 cut(s) 950
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 2 cut(s) 705, 918
AdeI CACNNNGTG 1 cut(s) 315
AfaI GTAC 5 cut(s) 161, 212, 335, 782, 935
AfiI CCNNNNNNNGG 7 cut(s) 315, 513, 628, 665, 793, 880, 927
AflII CTTAAG 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 3 cut(s) 311, 641, 786
AluBI AGCT 3 cut(s) 130, 151, 903
AluI AGCT 3 cut(s) 130, 151, 903
Alw26I GTCTC 4 cut(s) 61, 106, 611, 864
AlwI GGATC 1 cut(s) 950
Ama87I CYCGRG 2 cut(s) 377, 628
AoxI GGCC 4 cut(s) 644, 667, 709, 747
ApeKI GCWGC 2 cut(s) 548, 815
ApoI RAATTY 1 cut(s) 387
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 2 cut(s) 641, 920
AspS9I GGNCC 5 cut(s) 170, 283, 645, 668, 791
AsuC2I CCSGG 4 cut(s) 629, 630, 831, 858
AsuHPI GGTGA 5 cut(s) 250, 270, 337, 415, 470
AvaI CYCGRG 2 cut(s) 377, 628
AvaII GGWCC 3 cut(s) 170, 283, 791
BaeGI GKGCMC 1 cut(s) 629
BanI GGYRCC 2 cut(s) 536, 917
BanII GRGCYC 2 cut(s) 560, 680
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 535, 802
BccI CCATC 2 cut(s) 203, 967
BceAI ACGGC 5 cut(s) 199, 229, 491, 682, 733
BciT130I CCWGG 3 cut(s) 313, 643, 788
BcnI CCSGG 4 cut(s) 629, 630, 831, 858
BcoDI GTCTC 4 cut(s) 61, 106, 611, 864
BfaI CTAG 2 cut(s) 87, 988
BfoI RGCGCY 1 cut(s) 921
BfrI CTTAAG 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 717
BisI GCNGC 3 cut(s) 535, 549, 816
BlsI GCNGC 3 cut(s) 536, 550, 817
BmcAI AGTACT 2 cut(s) 335, 935
Bme1390I CCNGG 7 cut(s) 313, 629, 630, 643, 788, 831, 858
Bme18I GGWCC 3 cut(s) 170, 283, 791
BmeT110I CYCGRG 2 cut(s) 377, 628
BmgT120I GGNCC 5 cut(s) 170, 283, 645, 668, 791
BmiI GGNNCC 5 cut(s) 538, 792, 804, 919, 942
BmrFI CCNGG 7 cut(s) 313, 629, 630, 643, 788, 831, 858
BmrI ACTGGG 2 cut(s) 22, 616
BmsI GCATC 2 cut(s) 521, 874
BmuI ACTGGG 2 cut(s) 22, 616
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 389, 421
Bpu10I CCTNAGC 1 cut(s) 843
BpuMI CCSGG 4 cut(s) 629, 630, 831, 858
BsaHI GRCGYC 2 cut(s) 705, 918
BsaI GGTCTC 3 cut(s) 61, 611, 864
BsaJI CCNNGG 5 cut(s) 105, 541, 571, 628, 787
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 6 cut(s) 109, 139, 284, 314, 332, 362
Bsc4I CCNNNNNNNGG 7 cut(s) 315, 513, 628, 665, 793, 880, 927
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 5 cut(s) 28, 81, 142, 622, 898
BseBI CCWGG 3 cut(s) 313, 643, 788
BseDI CCNNGG 5 cut(s) 105, 541, 571, 628, 787
BseGI GGATG 2 cut(s) 567, 889
BseLI CCNNNNNNNGG 7 cut(s) 315, 513, 628, 665, 793, 880, 927
BseMII CTCAG 2 cut(s) 136, 606
BseNI ACTGG 5 cut(s) 28, 81, 142, 622, 898
BseSI GKGCMC 1 cut(s) 629
BseXI GCAGC 2 cut(s) 535, 802
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 4 cut(s) 646, 669, 711, 749
BshNI GGYRCC 2 cut(s) 536, 917
BshTI ACCGGT 1 cut(s) 280
BsiHKCI CYCGRG 2 cut(s) 377, 628
BsiSI CCGG 7 cut(s) 281, 629, 750, 794, 831, 858, 867
BslFI GGGAC 3 cut(s) 130, 645, 813
BslI CCNNNNNNNGG 7 cut(s) 315, 513, 628, 665, 793, 880, 927
BsmAI GTCTC 4 cut(s) 61, 106, 611, 864
BsmFI GGGAC 3 cut(s) 130, 645, 813
BsnI GGCC 4 cut(s) 646, 669, 711, 749
Bso31I GGTCTC 3 cut(s) 61, 611, 864
BsoBI CYCGRG 2 cut(s) 377, 628
Bsp1286I GDGCHC 3 cut(s) 560, 629, 680
Bsp143I GATC 1 cut(s) 955
BspACI CCGC 3 cut(s) 534, 683, 797
BspANI GGCC 4 cut(s) 646, 669, 711, 749
BspCNI CTCAG 2 cut(s) 135, 607
BspLI GGNNCC 5 cut(s) 538, 792, 804, 919, 942
BspPI GGATC 1 cut(s) 950
BspT107I GGYRCC 2 cut(s) 536, 917
BspTI CTTAAG 1 cut(s) 155
BspTNI GGTCTC 3 cut(s) 61, 611, 864
BsrBI CCGCTC 1 cut(s) 685
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 5 cut(s) 28, 81, 142, 622, 898
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 5 cut(s) 105, 541, 571, 628, 787
BssMI GATC 1 cut(s) 955
BssNI GRCGYC 2 cut(s) 705, 918
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 313, 643, 788
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 3 cut(s) 50, 68, 180
BstACI GRCGYC 2 cut(s) 705, 918
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 228, 739, 901
BstDEI CTNAG 4 cut(s) 49, 122, 615, 843
BstDSI CCRYGG 1 cut(s) 541
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 2 cut(s) 567, 889
BstH2I RGCGCY 1 cut(s) 921
BstHHI GCGC 2 cut(s) 641, 920
BstKTI GATC 1 cut(s) 958
BstMAI GTCTC 4 cut(s) 61, 106, 611, 864
BstMBI GATC 1 cut(s) 955
BstMWI GCNNNNNNNGC 9 cut(s) 127, 236, 503, 675, 717, 755, 821, 848, 917
BstNI CCWGG 3 cut(s) 313, 643, 788
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 7 cut(s) 311, 627, 628, 641, 786, 829, 856
BstSLI GKGCMC 1 cut(s) 629
BstV1I GCAGC 2 cut(s) 535, 802
BstV2I GAAGAC 1 cut(s) 326
BsuRI GGCC 4 cut(s) 646, 669, 711, 749
BtgI CCRYGG 1 cut(s) 541
BtsCI GGATG 2 cut(s) 567, 889
BtsIMutI CAGTG 3 cut(s) 74, 130, 629
Cac8I GCNNGC 3 cut(s) 228, 739, 901
CfoI GCGC 2 cut(s) 641, 920
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 5 cut(s) 170, 283, 645, 668, 791
Cfr9I CCCGGG 1 cut(s) 628
CsiI ACCWGGT 1 cut(s) 311
Csp6I GTAC 5 cut(s) 160, 211, 334, 781, 934
CspAI ACCGGT 1 cut(s) 280
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 2 cut(s) 523, 721
CviQI GTAC 5 cut(s) 160, 211, 334, 781, 934
DdeI CTNAG 4 cut(s) 49, 122, 615, 843
DinI GGCGCC 1 cut(s) 919
DpnI GATC 1 cut(s) 957
DpnII GATC 1 cut(s) 955
DraIII CACNNNGTG 1 cut(s) 315
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 3 cut(s) 50, 68, 180
EarI CTCTTC 3 cut(s) 50, 68, 180
EciI GGCGGA 1 cut(s) 812
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 2 cut(s) 560, 680
Eco31I GGTCTC 3 cut(s) 61, 611, 864
Eco47I GGWCC 3 cut(s) 170, 283, 791
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 377, 628
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 3 cut(s) 311, 641, 786
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 2 cut(s) 560, 680
EgeI GGCGCC 1 cut(s) 919
EheI GGCGCC 1 cut(s) 919
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 526, 724
FaiI YATR 4 cut(s) 165, 524, 722, 840
FaqI GGGAC 3 cut(s) 130, 645, 813
FatI CATG 2 cut(s) 522, 720
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 3 cut(s) 535, 549, 816
FokI GGATG 2 cut(s) 554, 896
FriOI GRGCYC 2 cut(s) 560, 680
Fsp4HI GCNGC 3 cut(s) 535, 549, 816
FspBI CTAG 2 cut(s) 87, 988
GlaI GCGC 2 cut(s) 640, 919
GluI GCNGC 3 cut(s) 535, 549, 816
GsaI CCCAGC 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 921
HaeIII GGCC 4 cut(s) 646, 669, 711, 749
HapII CCGG 7 cut(s) 281, 629, 750, 794, 831, 858, 867
HhaI GCGC 2 cut(s) 641, 920
Hin1I GRCGYC 2 cut(s) 705, 918
Hin1II CATG 2 cut(s) 526, 724
Hin6I GCGC 2 cut(s) 639, 918
HinP1I GCGC 2 cut(s) 639, 918
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 1 cut(s) 633
HpaII CCGG 7 cut(s) 281, 629, 750, 794, 831, 858, 867
HphI GGTGA 5 cut(s) 250, 270, 337, 415, 470
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 7 cut(s) 250, 394, 413, 572, 608, 616, 773
Hpy188III TCNNGA 2 cut(s) 379, 487
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 7 cut(s) 308, 398, 512, 515, 707, 710, 719
HpyAV CCTTC 2 cut(s) 658, 921
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 480, 705
HpyCH4V TGCA 2 cut(s) 522, 692
HpyF10VI GCNNNNNNNGC 9 cut(s) 127, 236, 503, 675, 717, 755, 821, 848, 917
HpyF3I CTNAG 4 cut(s) 49, 122, 615, 843
HpySE526I ACGT 2 cut(s) 480, 705
Hsp92I GRCGYC 2 cut(s) 705, 918
Hsp92II CATG 2 cut(s) 526, 724
HspAI GCGC 2 cut(s) 639, 918
KasI GGCGCC 1 cut(s) 917
Kzo9I GATC 1 cut(s) 955
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 2 cut(s) 535, 802
LweI GCATC 2 cut(s) 521, 874
MabI ACCWGGT 1 cut(s) 311
MaeI CTAG 2 cut(s) 87, 988
MaeII ACGT 2 cut(s) 480, 705
MaeIII GTNAC 2 cut(s) 458, 860
MalI GATC 1 cut(s) 957
MbiI CCGCTC 1 cut(s) 685
MboI GATC 1 cut(s) 955
MboII GAAGA 9 cut(s) 3, 37, 55, 75, 167, 261, 264, 331, 478
MhlI GDGCHC 3 cut(s) 560, 629, 680
MluCI AATT 1 cut(s) 387
Mly113I GGCGCC 1 cut(s) 918
MlyI GAGTC 1 cut(s) 627
MmeI TCCRAC 2 cut(s) 417, 586
MseI TTAA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 7 cut(s) 281, 629, 750, 794, 831, 858, 867
MspR9I CCNGG 7 cut(s) 313, 629, 630, 643, 788, 831, 858
MvaI CCWGG 3 cut(s) 313, 643, 788
MwoI GCNNNNNNNGC 9 cut(s) 127, 236, 503, 675, 717, 755, 821, 848, 917
NarI GGCGCC 1 cut(s) 918
NciI CCSGG 4 cut(s) 629, 630, 831, 858
NdeII GATC 1 cut(s) 955
NlaIII CATG 2 cut(s) 526, 724
NlaIV GGNNCC 5 cut(s) 538, 792, 804, 919, 942
NmuCI GTSAC 1 cut(s) 458
PcsI WCGNNNNNNNCGW 3 cut(s) 477, 711, 896
PflMI CCANNNNNTGG 1 cut(s) 315
PfoI TCCNGGA 1 cut(s) 829
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 3 cut(s) 536, 550, 817
PleI GAGTC 1 cut(s) 627
PluTI GGCGCC 1 cut(s) 921
PpsI GAGTC 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 311, 641, 786
PspEI GGTNACC 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 3 cut(s) 311, 641, 786
PspN4I GGNNCC 5 cut(s) 538, 792, 804, 919, 942
PspPI GGNCC 5 cut(s) 170, 283, 645, 668, 791
RsaI GTAC 5 cut(s) 161, 212, 335, 782, 935
RsaNI GTAC 5 cut(s) 160, 211, 334, 781, 934
SalI GTCGAC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 535, 549, 816
Sau3AI GATC 1 cut(s) 955
Sau96I GGNCC 5 cut(s) 170, 283, 645, 668, 791
ScaI AGTACT 2 cut(s) 335, 935
SchI GAGTC 1 cut(s) 627
ScrFI CCNGG 7 cut(s) 313, 629, 630, 643, 788, 831, 858
SduI GDGCHC 3 cut(s) 560, 629, 680
SexAI ACCWGGT 1 cut(s) 311
SfaNI GCATC 2 cut(s) 521, 874
SfoI GGCGCC 1 cut(s) 919
SgrDI CGTCGACG 1 cut(s) 509
SinI GGWCC 3 cut(s) 170, 283, 791
SmaI CCCGGG 1 cut(s) 630
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 387
SsiI CCGC 3 cut(s) 534, 683, 797
SspDI GGCGCC 1 cut(s) 917
SspMI CTAG 2 cut(s) 87, 988
StyD4I CCNGG 7 cut(s) 311, 627, 628, 641, 786, 829, 856
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 2 cut(s) 483, 708
TaqI TCGA 2 cut(s) 510, 714
TasI AATT 1 cut(s) 387
TatI WGTACW 2 cut(s) 333, 933
TauI GCSGC 1 cut(s) 537
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 81, 130, 629
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 548, 815
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 3 cut(s) 9, 244, 539
TspGWI ACGGA 1 cut(s) 292
TspMI CCCGGG 1 cut(s) 628
TspRI CASTG 3 cut(s) 81, 130, 629
Van91I CCANNNNNTGG 1 cut(s) 315
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 3 cut(s) 170, 283, 791
XapI RAATTY 1 cut(s) 387
XmaI CCCGGG 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 2 cut(s) 87, 988
ZraI GACGTC 1 cut(s) 706
ZrmI AGTACT 2 cut(s) 335, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.