Rorug07G0320300

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000422
Physical Location & Seq
Reverse (-)
32881827 .. 32883236
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0320300.1

Sequence Viewer

Length: 1056 bp
ATGCCTCAAGCGTCTGCGTCTTCTCAGCCTATTGAACTTTGTGACCACCACTTCTCAGTGGAGGATGGTCTCATTCCTACTTCCACCGCGAGGAAATATGAAGGTAGTTTAGAGGAGGCATCTTATGAGTTTTCTGGGCACTTTGTTTCTCCCAAGTCCATATCTAGATCGAGTCCTGAAACTCACAAGTTCATCTGCTCTTGGGGGGAATTTACTCCTTCTCTGGAAGATGTTTGCAATATCATGAGAATCCCAATTGTTGGGGATGGTAATCCCTTCAGGATAGAGCTGGATAAGGCGCAGAAGAAGAAGCTACAGGTTTTGGAGAATGGTGCTATACTTCTAAAGAAGTGTTCCGTTTTTGTAATTGGGTTTATTTTTGCGGATTTTCCCTATGAGAATGTGCAGCAGCGAGTCTTCCCATTGGCCATTATGCTAGCAGCCGGTACTTGTTTCCCGCTTGCTCCTCTTTTCCTCAGTCACCTATATTGGAAGCTTGATCAGATTTCAAAGGATGATAAAGAAGGTTTGGCCATGGAACCTGTGACCCCTGAGTCCCTTCGCCAACTTGAGGGGGGTAAAAGAGATTTCAATTTAGTAGGATTCTCGTTGTGCAGTAGATGGTTCAGAAGGAAAGCCAAGAAGGGTGCATTTAGGCCTGCTGTCCTGGATGACATCAGGCAATTCAATTTCAGGCCATATTTTACTGCTCATGGCTTCCAGACATTTCCTTTCTTCTATCCAGAGGGTAACTCATCACCGTTCTTGGAATCCGTTGAGTTGCTTCTAGCCACTAGCGCGCAGTCCATAGTGGCATGGGGCGATTTCTTTGACCCTGCGATGGAGATATATTCCCCTCATAGAGTTAGGAGGCAATTTGGCATCGATCAGGACGTGCCATCGCATCTATCTTACGGTGGACATATTGGGGATTGCATCATGGATTCCACTCGGACATATGGTATTTCTTGCAGTGGCATACTTTCTGATAGTCTCGGGAAGAAGGACAGTGTCGGCTCTCCTACATCAACATTCTTGAGATTTTGGGAGCTGTAG

Protein Analysis

351

Amino Acids

39.46

Weight (kDa)

6.01

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 122 - 303 7.5e-14 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 553
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 2 cut(s) 89, 800
AciI CCGC 3 cut(s) 87, 383, 458
AcoI YGGCCR 2 cut(s) 426, 531
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 262
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 4 cut(s) 90, 260, 571, 841
AgsI TTSAA 4 cut(s) 35, 510, 592, 688
AjiI CACGTC 1 cut(s) 895
AjnI CCWGG 1 cut(s) 666
AluBI AGCT 4 cut(s) 289, 313, 496, 1051
AluI AGCT 4 cut(s) 289, 313, 496, 1051
Alw26I GTCTC 2 cut(s) 74, 998
Ama87I CYCGRG 1 cut(s) 995
AoxI GGCC 4 cut(s) 426, 531, 656, 695
ApeKI GCWGC 3 cut(s) 406, 409, 440
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 3 cut(s) 301, 800, 802
AsuHPI GGTGA 2 cut(s) 473, 750
AsuNHI GCTAGC 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 141
BalI TGGCCA 2 cut(s) 428, 533
BbsI GAAGAC 2 cut(s) 12, 409
BbvI GCAGC 3 cut(s) 418, 421, 452
BccI CCATC 5 cut(s) 59, 260, 615, 835, 907
BciT130I CCWGG 1 cut(s) 668
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 74, 998
BfaI CTAG 4 cut(s) 165, 437, 788, 795
BfmI CTRYAG 2 cut(s) 314, 1052
BisI GCNGC 3 cut(s) 407, 410, 441
BlsI GCNGC 3 cut(s) 408, 411, 442
Bme1390I CCNGG 1 cut(s) 668
BmeT110I CYCGRG 1 cut(s) 995
BmgBI CACGTC 1 cut(s) 895
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 1 cut(s) 668
BmsI GCATC 4 cut(s) 128, 891, 913, 945
BmtI GCTAGC 1 cut(s) 440
BpiI GAAGAC 2 cut(s) 12, 409
BplI GAGNNNNNCTC 2 cut(s) 737, 769
BpuEI CTTGAG 1 cut(s) 590
Bsa29I ATCGAT 1 cut(s) 885
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 260, 571, 841
Bse118I RCCGGY 1 cut(s) 443
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 668
BseCI ATCGAT 1 cut(s) 885
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 4 cut(s) 70, 271, 520, 676
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 4 cut(s) 90, 260, 571, 841
BseMII CTCAG 4 cut(s) 38, 69, 490, 543
BsePI GCGCGC 1 cut(s) 798
BseRI GAGGAG 2 cut(s) 128, 456
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 3 cut(s) 418, 421, 452
BsgI GTGCAG 2 cut(s) 425, 634
Bsh1236I CGCG 2 cut(s) 89, 800
BshFI GGCC 4 cut(s) 428, 533, 658, 697
BshVI ATCGAT 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 4 cut(s) 90, 260, 571, 841
BsmAI GTCTC 2 cut(s) 74, 998
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 4 cut(s) 428, 533, 658, 697
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 995
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 167, 499, 886
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 3 cut(s) 87, 383, 458
BspANI GGCC 4 cut(s) 428, 533, 658, 697
BspCNI CTCAG 4 cut(s) 37, 68, 489, 544
BspDI ATCGAT 1 cut(s) 885
BspFNI CGCG 2 cut(s) 89, 800
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 540
BspOI GCTAGC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 534
BssHII GCGCGC 1 cut(s) 798
BssMI GATC 3 cut(s) 167, 499, 886
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 3 cut(s) 762, 917, 1010
BstC8I GCNNGC 4 cut(s) 438, 462, 660, 800
BstDEI CTNAG 4 cut(s) 24, 55, 476, 552
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 4 cut(s) 70, 271, 520, 676
BstFNI CGCG 2 cut(s) 89, 800
BstHHI GCGC 3 cut(s) 301, 800, 802
BstKTI GATC 3 cut(s) 170, 502, 889
BstMAI GTCTC 2 cut(s) 74, 998
BstMBI GATC 3 cut(s) 167, 499, 886
BstMWI GCNNNNNNNGC 1 cut(s) 797
BstNI CCWGG 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 666
BstSFI CTRYAG 2 cut(s) 314, 1052
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 2 cut(s) 89, 800
BstV1I GCAGC 3 cut(s) 418, 421, 452
BstV2I GAAGAC 2 cut(s) 12, 409
Bsu15I ATCGAT 1 cut(s) 885
BsuRI GGCC 4 cut(s) 428, 533, 658, 697
BsuTUI ATCGAT 1 cut(s) 885
BtgI CCRYGG 1 cut(s) 534
BtgZI GCGATG 2 cut(s) 854, 885
BtrI CACGTC 1 cut(s) 895
BtsCI GGATG 4 cut(s) 70, 271, 520, 676
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 3 cut(s) 63, 979, 1015
Cac8I GCNNGC 4 cut(s) 438, 462, 660, 800
CciI TCATGA 1 cut(s) 243
CfoI GCGC 3 cut(s) 301, 800, 802
Cfr10I RCCGGY 1 cut(s) 443
ClaI ATCGAT 1 cut(s) 885
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 447
CviAII CATG 5 cut(s) 244, 535, 713, 816, 940
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 4 cut(s) 24, 55, 476, 552
DpnI GATC 3 cut(s) 169, 501, 888
DpnII GATC 3 cut(s) 167, 499, 886
DrdI GACNNNNNNGTC 1 cut(s) 553
DseDI GACNNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 2 cut(s) 426, 531
Eco130I CCWWGG 1 cut(s) 534
Eco147I AGGCCT 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 5 cut(s) 247, 538, 716, 819, 943
FaqI GGGAC 1 cut(s) 541
FatI CATG 5 cut(s) 243, 534, 712, 815, 939
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 1 cut(s) 958
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 407, 410, 441
FokI GGATG 4 cut(s) 77, 278, 527, 683
Fsp4HI GCNGC 3 cut(s) 407, 410, 441
FspBI CTAG 4 cut(s) 165, 437, 788, 795
GlaI GCGC 3 cut(s) 300, 799, 801
GluI GCNGC 3 cut(s) 407, 410, 441
HaeIII GGCC 4 cut(s) 428, 533, 658, 697
HapII CCGG 1 cut(s) 444
HgaI GACGC 1 cut(s) 6
HhaI GCGC 3 cut(s) 301, 800, 802
Hin1II CATG 5 cut(s) 247, 538, 716, 819, 943
Hin6I GCGC 3 cut(s) 299, 798, 800
HinP1I GCGC 3 cut(s) 299, 798, 800
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 7 cut(s) 172, 249, 414, 554, 603, 770, 944
HpaII CCGG 1 cut(s) 444
HphI GGTGA 2 cut(s) 473, 750
Hpy166II GTNNAC 1 cut(s) 920
Hpy188I TCNGA 4 cut(s) 504, 629, 954, 988
Hpy8I GTNNAC 1 cut(s) 920
HpyAV CCTTC 8 cut(s) 95, 228, 286, 518, 569, 624, 637, 997
HpyCH4III ACNGT 3 cut(s) 762, 917, 1010
HpyCH4IV ACGT 1 cut(s) 894
HpyCH4V TGCA 6 cut(s) 237, 406, 615, 650, 936, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 797
HpyF3I CTNAG 4 cut(s) 24, 55, 476, 552
HpySE526I ACGT 1 cut(s) 894
Hsp92II CATG 5 cut(s) 247, 538, 716, 819, 943
HspAI GCGC 3 cut(s) 299, 798, 800
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 3 cut(s) 167, 499, 886
LmnI GCTCC 2 cut(s) 469, 1048
Lsp1109I GCAGC 3 cut(s) 418, 421, 452
LweI GCATC 4 cut(s) 128, 891, 913, 945
MaeI CTAG 4 cut(s) 165, 437, 788, 795
MaeII ACGT 1 cut(s) 894
MaeIII GTNAC 4 cut(s) 41, 479, 544, 749
MalI GATC 3 cut(s) 169, 501, 888
MboI GATC 3 cut(s) 167, 499, 886
MboII GAAGA 7 cut(s) 12, 239, 316, 319, 409, 727, 1012
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 2 cut(s) 428, 533
MluCI AATT 7 cut(s) 209, 255, 366, 592, 683, 688, 875
MluNI TGGCCA 2 cut(s) 428, 533
MlyI GAGTC 3 cut(s) 181, 423, 563
Mox20I TGGCCA 2 cut(s) 428, 533
MscI TGGCCA 2 cut(s) 428, 533
Msp20I TGGCCA 2 cut(s) 428, 533
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 668
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 668
MvnI CGCG 2 cut(s) 89, 800
MwoI GCNNNNNNNGC 1 cut(s) 797
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 958
NdeII GATC 3 cut(s) 167, 499, 886
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 5 cut(s) 247, 538, 716, 819, 943
NlaIV GGNNCC 1 cut(s) 540
NmuCI GTSAC 3 cut(s) 41, 479, 544
PagI TCATGA 1 cut(s) 243
PauI GCGCGC 1 cut(s) 798
PceI AGGCCT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 891
PfeI GAWTC 4 cut(s) 249, 603, 770, 944
PflFI GACNNNGTC 1 cut(s) 1010
PflMI CCANNNNNTGG 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 666
PkrI GCNGC 3 cut(s) 408, 411, 442
PleI GAGTC 3 cut(s) 180, 422, 562
PpsI GAGTC 3 cut(s) 180, 422, 562
Psp6I CCWGG 1 cut(s) 666
PspGI CCWGG 1 cut(s) 666
PspN4I GGNNCC 1 cut(s) 540
PsyI GACNNNGTC 1 cut(s) 1010
PteI GCGCGC 1 cut(s) 798
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SatI GCNGC 3 cut(s) 407, 410, 441
Sau3AI GATC 3 cut(s) 167, 499, 886
SchI GAGTC 3 cut(s) 181, 423, 563
ScrFI CCNGG 1 cut(s) 668
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 4 cut(s) 128, 891, 913, 945
SfcI CTRYAG 2 cut(s) 314, 1052
SmlI CTYRAG 3 cut(s) 6, 569, 1036
SmoI CTYRAG 3 cut(s) 6, 569, 1036
Sse9I AATT 7 cut(s) 209, 255, 366, 592, 683, 688, 875
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 3 cut(s) 87, 383, 458
SspMI CTAG 4 cut(s) 165, 437, 788, 795
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 1 cut(s) 666
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 762, 917, 1010
TaiI ACGT 1 cut(s) 897
TaqI TCGA 2 cut(s) 170, 885
TasI AATT 7 cut(s) 209, 255, 366, 592, 683, 688, 875
TfiI GAWTC 4 cut(s) 249, 603, 770, 944
TscAI CASTG 3 cut(s) 63, 979, 1015
TseFI GTSAC 3 cut(s) 41, 479, 544
TseI GCWGC 3 cut(s) 406, 409, 440
Tsp45I GTSAC 3 cut(s) 41, 479, 544
TspDTI ATGAA 2 cut(s) 114, 181
TspGWI ACGGA 2 cut(s) 346, 763
TspRI CASTG 3 cut(s) 63, 979, 1015
Tth111I GACNNNGTC 1 cut(s) 1010
Van91I CCANNNNNTGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 164
XspI CTAG 4 cut(s) 165, 437, 788, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.