Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

27031496 .. 27032074

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGCAAGTCCCTATCTCAAACACACATAAAAAAGTTGGCAGCCAAGGGTAGCCAGAGCAATGCCATCAATGTTGTCTTGACCTCATCAGATGTTCTAATTGATGGGTTCTGCTCTAGCAAATGTGGTACACATGGTTCTTCAAGGAGCTCTTTCGTCAGAGGCAAGAGCTCCAGGTTTGCTTACATCTGGGTGGGGAACTCCGAGACCCAATGCCCAGGTCAATGTGCTTGGCCATTCCACCAACCTATCTATGGACCACAGACCACACCATTGGTGGCACCCAACAACGATGTCGGTGTGGACGGCATGATCATCAATCTAGCTAGCCTTTTGGCTGGGACCGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAAGCTCCATTAGAGGCTGCCTCGGCTTGTCCTGGAGTTTATGCTAAAGGAGCTTATCCTGGTTACGCCGGAGACCTCTTGGTGGATGCTACGACTGGTGCCAGCTACAACGCCAACGGTTTGAACGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCTTCAACCTCAACCTGTTCTACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

193

Amino Acids

19.92

Weight (kDa)

8.51

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	1 - 191	7.9e-91	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	280, 485
AcoI	YGGCCR	1 cut(s)	233
AfaI	GTAC	2 cut(s)	130, 524
AfiI	CCNNNNNNNGG	2 cut(s)	254, 469
AgsI	TTSAA	3 cut(s)	144, 511, 552
AjnI	CCWGG	5 cut(s)	173, 217, 375, 418, 445
AluBI	AGCT	6 cut(s)	150, 171, 326, 392, 440, 492
AluI	AGCT	6 cut(s)	150, 171, 326, 392, 440, 492
Alw21I	GWGCWC	2 cut(s)	152, 173
Alw26I	GTCTC	2 cut(s)	200, 453
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	41, 404
AspS9I	GGNCC	3 cut(s)	257, 342, 380
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	3 cut(s)	257, 342, 380
BalI	TGGCCA	1 cut(s)	235
BanI	GGYRCC	2 cut(s)	280, 485
BanII	GRGCYC	2 cut(s)	152, 173
Bbv12I	GWGCWC	2 cut(s)	152, 173
BbvI	GCAGC	2 cut(s)	53, 391
BccI	CCATC	2 cut(s)	74, 98
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	5 cut(s)	175, 219, 377, 420, 447
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	200, 453
BfaI	CTAG	3 cut(s)	117, 323, 327
BisI	GCNGC	2 cut(s)	42, 405
BlsI	GCNGC	2 cut(s)	43, 406
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	5 cut(s)	175, 219, 377, 420, 447
Bme18I	GGWCC	3 cut(s)	257, 342, 380
BmgT120I	GGNCC	3 cut(s)	257, 342, 380
BmiI	GGNNCC	5 cut(s)	282, 343, 381, 382, 487
BmrFI	CCNGG	5 cut(s)	175, 219, 377, 420, 447
BmsI	GCATC	1 cut(s)	463
BmtI	GCTAGC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	2 cut(s)	157, 441
BsaI	GGTCTC	2 cut(s)	200, 453
BsaJI	CCNNGG	4 cut(s)	45, 217, 376, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 469
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	5 cut(s)	175, 219, 377, 420, 447
BseDI	CCNNGG	4 cut(s)	45, 217, 376, 408
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	254, 469
BseMI	GCAATG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	53, 391
BseYI	CCCAGC	1 cut(s)	338
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	2 cut(s)	280, 485
BsiHKAI	GWGCWC	2 cut(s)	152, 173
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	355, 366
BslI	CCNNNNNNNGG	2 cut(s)	254, 469
BsmAI	GTCTC	2 cut(s)	200, 453
BsmFI	GGGAC	2 cut(s)	355, 366
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	2 cut(s)	200, 453
Bsp1286I	GDGCHC	2 cut(s)	152, 173
Bsp143I	GATC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	235
BspLI	GGNNCC	5 cut(s)	282, 343, 381, 382, 487
BspOI	GCTAGC	1 cut(s)	330
BspT107I	GGYRCC	2 cut(s)	280, 485
BspTNI	GGTCTC	2 cut(s)	200, 453
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	4 cut(s)	45, 217, 376, 408
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	5 cut(s)	175, 219, 377, 420, 447
Bst4CI	ACNGT	2 cut(s)	346, 506
BstC8I	GCNNGC	2 cut(s)	328, 490
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	2 cut(s)	200, 453
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 437
BstNI	CCWGG	5 cut(s)	175, 219, 377, 420, 447
BstSCI	CCNGG	5 cut(s)	173, 217, 375, 418, 445
BstV1I	GCAGC	2 cut(s)	53, 391
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	328, 490
Cfr13I	GGNCC	3 cut(s)	257, 342, 380
Csp6I	GTAC	2 cut(s)	129, 523
CviAII	CATG	2 cut(s)	134, 310
CviQI	GTAC	2 cut(s)	129, 523
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	233
Ecl136II	GAGCTC	2 cut(s)	150, 171
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	152, 173
Eco31I	GGTCTC	2 cut(s)	200, 453
Eco47I	GGWCC	3 cut(s)	257, 342, 380
Eco53kI	GAGCTC	2 cut(s)	150, 171
EcoICRI	GAGCTC	2 cut(s)	150, 171
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	5 cut(s)	173, 217, 375, 418, 445
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	2 cut(s)	152, 173
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	137, 313
FaiI	YATR	5 cut(s)	29, 135, 255, 311, 429
FalI	AAGNNNNNCTT	4 cut(s)	136, 168, 509, 541
FaqI	GGGAC	2 cut(s)	355, 366
FatI	CATG	2 cut(s)	133, 309
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	42, 405
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	2 cut(s)	152, 173
Fsp4HI	GCNGC	2 cut(s)	42, 405
FspBI	CTAG	3 cut(s)	117, 323, 327
GluI	GCNGC	2 cut(s)	42, 405
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	2 cut(s)	157, 441
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	2 cut(s)	137, 313
HpaII	CCGG	1 cut(s)	456
Hpy166II	GTNNAC	2 cut(s)	131, 304
Hpy188I	TCNGA	3 cut(s)	91, 161, 205
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	131, 304
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	2 cut(s)	346, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 437
Hsp92II	CATG	2 cut(s)	137, 313
KflI	GGGWCCC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	4 cut(s)	147, 176, 397, 437
Lsp1109I	GCAGC	2 cut(s)	53, 391
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	3 cut(s)	117, 323, 327
MaeIII	GTNAC	2 cut(s)	346, 449
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	132, 529
MhlI	GDGCHC	2 cut(s)	152, 173
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	235
MnlI	CCTC	6 cut(s)	94, 155, 394, 418, 473, 565
Mox20I	TGGCCA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	235
MslI	CAYNNNNRTG	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	235
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	5 cut(s)	175, 219, 377, 420, 447
MvaI	CCWGG	5 cut(s)	175, 219, 377, 420, 447
MwoI	GCNNNNNNNGC	2 cut(s)	410, 437
NdeII	GATC	1 cut(s)	312
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	137, 313
NlaIV	GGNNCC	5 cut(s)	282, 343, 381, 382, 487
NmeAIII	GCCGAG	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	43, 406
PpuMI	RGGWCCY	1 cut(s)	380
Psp124BI	GAGCTC	2 cut(s)	152, 173
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	5 cut(s)	173, 217, 375, 418, 445
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	5 cut(s)	173, 217, 375, 418, 445
PspN4I	GGNNCC	5 cut(s)	282, 343, 381, 382, 487
PspPI	GGNCC	3 cut(s)	257, 342, 380
PspPPI	RGGWCCY	1 cut(s)	380
PsrI	GAACNNNNNNTAC	2 cut(s)	121, 153
RsaI	GTAC	2 cut(s)	130, 524
RsaNI	GTAC	2 cut(s)	129, 523
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	2 cut(s)	152, 173
SatI	GCNGC	2 cut(s)	42, 405
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	3 cut(s)	257, 342, 380
ScaI	AGTACT	1 cut(s)	524
ScrFI	CCNGG	5 cut(s)	175, 219, 377, 420, 447
SduI	GDGCHC	2 cut(s)	152, 173
SfaNI	GCATC	1 cut(s)	463
SinI	GGWCC	3 cut(s)	257, 342, 380
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	99
SspMI	CTAG	3 cut(s)	117, 323, 327
SstI	GAGCTC	2 cut(s)	152, 173
StyD4I	CCNGG	5 cut(s)	173, 217, 375, 418, 445
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	346, 506
TasI	AATT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	41, 404
Tsp45I	GTSAC	1 cut(s)	346
VpaK11BI	GGWCC	3 cut(s)	257, 342, 380
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 274
XspI	CTAG	3 cut(s)	117, 323, 327
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.