Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

66140772 .. 66141283

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG491700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCATTATTGATGGGTTTTGCTCTAGCAAATGTGGCACACATGGGTATTCAAGAAGCTCTTTCCTTCAAGGCAAGAGCTCCAAATTCGCTTACATTTGGGTCTCAAGAGTTAGCTTACATGTGGGTCGGAAACTCCGAGACCCAGTGCCCTGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTATGGACCACAATCTCCAGCTTTGGTTGCACCCAACAACGATGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCTGGTGTCTATGGGAAAGGGGCACATCTAGGTTATGCTGGACACCTATTGGTTGATGCTACAACTGGTGCTAGCTACAATGCCAATGGTTTTAATGGGAAGAAGTACTTGCTCCCTGCTTTGTTCGATCCCTCAACCTCAACTTGTTCAACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

142

Amino Acids

14.83

Weight (kDa)

6.01

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	35 - 76	7.5e-19	Phosphate-induced protein 1 conserved region
Phi_1	PF04674	77 - 141	8.7e-26	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	53, 70, 417
AjnI	CCWGG	2 cut(s)	151, 268
AluBI	AGCT	5 cut(s)	59, 80, 116, 206, 342
AluI	AGCT	5 cut(s)	59, 80, 116, 206, 342
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	108, 134
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	191, 230
AsuNHI	GCTAGC	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	191, 230
BaeGI	GKGCMC	2 cut(s)	152, 292
BalI	TGGCCA	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	7, 183, 221
BciT130I	CCWGG	2 cut(s)	153, 270
BcoDI	GTCTC	2 cut(s)	108, 134
BfaI	CTAG	3 cut(s)	26, 296, 339
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	2 cut(s)	153, 270
Bme18I	GGWCC	2 cut(s)	191, 230
BmgT120I	GGNCC	2 cut(s)	191, 230
BmiI	GGNNCC	2 cut(s)	232, 243
BmrFI	CCNGG	2 cut(s)	153, 270
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	313
BmtI	GCTAGC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	90
BsaI	GGTCTC	2 cut(s)	108, 134
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	145, 337
BseBI	CCWGG	2 cut(s)	153, 270
BseDI	CCNNGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	145, 337
BseSI	GKGCMC	2 cut(s)	152, 292
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	108, 134
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	169
Bso31I	GGTCTC	2 cut(s)	108, 134
Bsp1286I	GDGCHC	3 cut(s)	82, 152, 292
Bsp143I	GATC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	232, 243
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	389
BspTNI	GGTCTC	2 cut(s)	108, 134
BsrI	ACTGG	2 cut(s)	145, 337
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	153, 270
BstC8I	GCNNGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	2 cut(s)	108, 134
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 212, 260
BstNI	CCWGG	2 cut(s)	153, 270
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	151, 268
BstSLI	GKGCMC	2 cut(s)	152, 292
BstV1I	GCAGC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	191, 230
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	2 cut(s)	43, 121
CviQI	GTAC	1 cut(s)	373
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	2 cut(s)	108, 134
Eco47I	GGWCC	2 cut(s)	191, 230
Eco53kI	GAGCTC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	151, 268
EcoT38I	GRGCYC	1 cut(s)	82
FaeI	CATG	2 cut(s)	46, 124
FaiI	YATR	5 cut(s)	44, 122, 189, 279, 303
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 359, 391
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	2 cut(s)	42, 120
Fnu4HI	GCNGC	1 cut(s)	255
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	26, 296, 339
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	46, 124
Hpy188I	TCNGA	2 cut(s)	131, 139
Hpy188III	TCNNGA	2 cut(s)	53, 107
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 212, 260
Hsp92II	CATG	2 cut(s)	46, 124
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	3 cut(s)	85, 247, 384
LpnPI	CCDG	9 cut(s)	138, 158, 165, 216, 255, 282, 291, 318, 396
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	3 cut(s)	26, 296, 339
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	1 cut(s)	379
MhlI	GDGCHC	3 cut(s)	82, 152, 292
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	2 cut(s)	85, 183
MluNI	TGGCCA	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	232, 244, 409, 415
Mox20I	TGGCCA	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	169
MseI	TTAA	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	153, 270
MvaI	CCWGG	2 cut(s)	153, 270
MwoI	GCNNNNNNNGC	3 cut(s)	35, 212, 260
NdeII	GATC	1 cut(s)	394
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	2 cut(s)	46, 124
NlaIV	GGNNCC	2 cut(s)	232, 243
NspI	RCATGY	1 cut(s)	124
PciI	ACATGT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	256
PscI	ACATGT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	151, 268
PspGI	CCWGG	2 cut(s)	151, 268
PspN4I	GGNNCC	2 cut(s)	232, 243
PspPI	GGNCC	2 cut(s)	191, 230
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	2 cut(s)	191, 230
ScaI	AGTACT	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	153, 270
SduI	GDGCHC	3 cut(s)	82, 152, 292
SetI	ASST	8 cut(s)	61, 82, 118, 208, 301, 315, 344, 407
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	2 cut(s)	191, 230
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	85, 183
SspMI	CTAG	3 cut(s)	26, 296, 339
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	151, 268
TaqI	TCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	85, 183
TatI	WGTACW	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	1 cut(s)	254
TspRI	CASTG	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	191, 230
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	3 cut(s)	26, 296, 339
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.