Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000477.1

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

12249 .. 13210

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000477.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggctgcttttgcttcctcttatctacttctacaactagccctgctcatctctttgttctattttggctcagcagctaggagccttgctgagacctcagaccaaacccagcagcctatactattccaataccacaatggccctcttctcactggcaaaatctccatcaatttgatctggtatgggaaattcaagccttcgcagcgcgcaattgtttccgatttcatcacctccctctccacttcttctccatctacaaaccaaccatcagttgctacatggtggaaatccatagagaaatactaccacctctccaatgccaagaaaacatcatctctttccctatcattgggtacccaaatcctcgacaagagctactctctgggcaagtccctatctgttggcaaacacatcaaacagttggcagccaagggtggccagagtaatgccatcaatgttgtcttaacctcatcagatgttctaattgatgggttctgctccagcaaatgtggtacacacgggtcttcaaagggctctttcatcagaggcaagagctccaagtttgcttacatctgggtcggaaactccgagacccaatgcccgggtcaatgtgcttgtccattccatcagccaatttacggaccacaatctccacctttggttgcaccaacaatgatgggggtttggacgggtcccaaagaggctccattagaggctgcatcggcttgtcctggagtttatgctaaaggagcttatcctggctacgctggagacctcttggttgatgctacgactggtgccagctacaatgccaatggtttgaatgggaagaagtacttgcttcctgctttgtttgacccttcaacctcaacttgttctactcttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

296

Amino Acids

31.42

Weight (kDa)

9.2

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	353, 797
AccII	CGCG	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	3 cut(s)	355, 514, 836
AfiI	CCNNNNNNNGG	3 cut(s)	349, 601, 638
AgsI	TTSAA	4 cut(s)	193, 528, 823, 864
AjnI	CCWGG	2 cut(s)	730, 757
AluBI	AGCT	5 cut(s)	77, 375, 555, 752, 804
AluI	AGCT	5 cut(s)	77, 375, 555, 752, 804
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	3 cut(s)	86, 584, 765
Ama87I	CYCGRG	1 cut(s)	601
AoxI	GGCC	2 cut(s)	139, 436
ApeKI	GCWGC	6 cut(s)	5, 74, 112, 202, 425, 716
ApoI	RAATTY	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	207, 209
AspS9I	GGNCC	3 cut(s)	140, 641, 692
AsuC2I	CCSGG	2 cut(s)	602, 603
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	2 cut(s)	641, 692
BalI	TGGCCA	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	353, 797
BanII	GRGCYC	2 cut(s)	536, 557
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	5 cut(s)	86, 124, 214, 437, 703
BccI	CCATC	7 cut(s)	173, 259, 274, 458, 482, 633, 670
BciT130I	CCWGG	2 cut(s)	732, 759
BcnI	CCSGG	2 cut(s)	602, 603
BcoDI	GTCTC	3 cut(s)	86, 584, 765
BfaI	CTAG	2 cut(s)	38, 78
BisI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 717
BlpI	GCTNAGC	1 cut(s)	70
BlsI	GCNGC	6 cut(s)	7, 76, 114, 204, 427, 718
BmcAI	AGTACT	1 cut(s)	836
Bme1390I	CCNGG	4 cut(s)	602, 603, 732, 759
Bme18I	GGWCC	2 cut(s)	641, 692
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	140, 641, 692
BmiI	GGNNCC	6 cut(s)	83, 355, 693, 694, 705, 799
BmrFI	CCNGG	4 cut(s)	602, 603, 732, 759
BmsI	GCATC	2 cut(s)	728, 775
BpiI	GAAGAC	1 cut(s)	516
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpmI	CTGGAG	3 cut(s)	484, 753, 789
Bpu1102I	GCTNAGC	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	602, 603
BsaI	GGTCTC	3 cut(s)	86, 584, 765
BsaJI	CCNNGG	2 cut(s)	429, 601
BsaXI	ACNNNNNCTCC	4 cut(s)	232, 262, 296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 601, 638
Bse1I	ACTGG	2 cut(s)	157, 799
BseBI	CCWGG	2 cut(s)	732, 759
BseDI	CCNNGG	2 cut(s)	429, 601
BseLI	CCNNNNNNNGG	3 cut(s)	349, 601, 638
BseMII	CTCAG	3 cut(s)	81, 84, 111
BseNI	ACTGG	2 cut(s)	157, 799
BsePI	GCGCGC	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	86, 124, 214, 437, 703
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	141, 438
BshNI	GGYRCC	2 cut(s)	353, 797
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	2 cut(s)	376, 678
BslI	CCNNNNNNNGG	3 cut(s)	349, 601, 638
BsmAI	GTCTC	3 cut(s)	86, 584, 765
BsmFI	GGGAC	2 cut(s)	376, 678
BsnI	GGCC	2 cut(s)	141, 438
Bso31I	GGTCTC	3 cut(s)	86, 584, 765
BsoBI	CYCGRG	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	536, 557
Bsp143I	GATC	1 cut(s)	174
Bsp1720I	GCTNAGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	141, 438
BspCNI	CTCAG	3 cut(s)	82, 83, 110
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	6 cut(s)	83, 355, 693, 694, 705, 799
BspT107I	GGYRCC	2 cut(s)	353, 797
BspTNI	GGTCTC	3 cut(s)	86, 584, 765
BsrI	ACTGG	2 cut(s)	157, 799
BssECI	CCNNGG	2 cut(s)	429, 601
BssHII	GCGCGC	1 cut(s)	205
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	732, 759
Bst4CI	ACNGT	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	207, 802
BstDEI	CTNAG	3 cut(s)	70, 90, 97
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	207, 209
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	3 cut(s)	86, 584, 765
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 202, 722, 749
BstNI	CCWGG	2 cut(s)	732, 759
BstSCI	CCNGG	4 cut(s)	600, 601, 730, 757
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	86, 124, 214, 437, 703
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	141, 438
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	207, 802
CfoI	GCGC	2 cut(s)	207, 209
Cfr13I	GGNCC	3 cut(s)	140, 641, 692
Cfr9I	CCCGGG	1 cut(s)	601
Csp6I	GTAC	3 cut(s)	354, 513, 835
CviAII	CATG	1 cut(s)	279
CviQI	GTAC	3 cut(s)	354, 513, 835
DdeI	CTNAG	3 cut(s)	70, 90, 97
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	536, 557
Eco31I	GGTCTC	3 cut(s)	86, 584, 765
Eco47I	GGWCC	2 cut(s)	641, 692
Eco53kI	GAGCTC	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	692
EcoRII	CCWGG	2 cut(s)	730, 757
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	536, 557
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	1 cut(s)	282
FaiI	YATR	5 cut(s)	119, 183, 280, 293, 741
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	2 cut(s)	376, 678
FatI	CATG	1 cut(s)	278
Fnu4HI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 717
FriOI	GRGCYC	2 cut(s)	536, 557
Fsp4HI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 717
FspBI	CTAG	2 cut(s)	38, 78
GlaI	GCGC	2 cut(s)	206, 208
GluI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 717
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	3 cut(s)	484, 753, 789
HaeIII	GGCC	2 cut(s)	141, 438
HapII	CCGG	1 cut(s)	602
HhaI	GCGC	2 cut(s)	207, 209
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	2 cut(s)	205, 207
HinP1I	GCGC	2 cut(s)	205, 207
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	6 cut(s)	100, 220, 475, 545, 581, 589
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	2 cut(s)	207, 870
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	665, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 202, 722, 749
HpyF3I	CTNAG	3 cut(s)	70, 90, 97
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	2 cut(s)	205, 207
KflI	GGGWCCC	1 cut(s)	692
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	5 cut(s)	81, 503, 560, 709, 749
Lsp1109I	GCAGC	5 cut(s)	86, 124, 214, 437, 703
LweI	GCATC	2 cut(s)	728, 775
MaeI	CTAG	2 cut(s)	38, 78
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	4 cut(s)	137, 237, 516, 841
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	536, 557
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	5 cut(s)	169, 188, 210, 483, 633
MluNI	TGGCCA	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	559
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	438
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	4 cut(s)	602, 603, 732, 759
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	732, 759
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	11, 202, 722, 749
NciI	CCSGG	2 cut(s)	602, 603
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	6 cut(s)	83, 355, 693, 694, 705, 799
PauI	GCGCGC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PfoI	TCCNGGA	1 cut(s)	730
PkrI	GCNGC	6 cut(s)	7, 76, 114, 204, 427, 718
PpuMI	RGGWCCY	1 cut(s)	692
Psp124BI	GAGCTC	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	730, 757
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	2 cut(s)	730, 757
PspN4I	GGNNCC	6 cut(s)	83, 355, 693, 694, 705, 799
PspPI	GGNCC	3 cut(s)	140, 641, 692
PspPPI	RGGWCCY	1 cut(s)	692
PteI	GCGCGC	1 cut(s)	205
RsaI	GTAC	3 cut(s)	355, 514, 836
RsaNI	GTAC	3 cut(s)	354, 513, 835
SacI	GAGCTC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 717
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	3 cut(s)	140, 641, 692
ScaI	AGTACT	1 cut(s)	836
ScrFI	CCNGG	4 cut(s)	602, 603, 732, 759
SduI	GDGCHC	2 cut(s)	536, 557
SfaNI	GCATC	2 cut(s)	728, 775
SinI	GGWCC	2 cut(s)	641, 692
SmaI	CCCGGG	1 cut(s)	603
Sse9I	AATT	5 cut(s)	169, 188, 210, 483, 633
SspMI	CTAG	2 cut(s)	38, 78
SstI	GAGCTC	1 cut(s)	557
StyD4I	CCNGG	4 cut(s)	600, 601, 730, 757
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	366
TasI	AATT	5 cut(s)	169, 188, 210, 483, 633
TatI	WGTACW	1 cut(s)	834
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	6 cut(s)	5, 74, 112, 202, 425, 716
TspDTI	ATGAA	2 cut(s)	214, 529
TspGWI	ACGGA	1 cut(s)	654
TspMI	CCCGGG	1 cut(s)	601
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	641, 692
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	601
XspI	CTAG	2 cut(s)	38, 78
ZrmI	AGTACT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.