Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

66189292 .. 66190380

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG492500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTTCTTCTGCTTTCATGCAATTACTCTCCTTTGTCCTAGTGCTCGGTTTGGTCCATTTTTGCTCAGCAGGTAGAAGCCTTGTTGAGACGTCAGACCAAACCCAGCAGCCTATACTATTTCAATACCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGAAAATTCAAGCCCTCCCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATTGAGAAATACTACCACCTCTCCAATGCCAAGAAAACCTCATCTCTTTCCCTCTCATTGGGTAACCAAATCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGAAAACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTCTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCCAGCAAATGTGGTACACACGGGTCTTCAAAAAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGCCCGGGTCAATGTGCTTGGCCATTCCACCAACCTATCTATGGACCACAGACCACACCTTTGGTGGCACCCAACAACGATGTCGGTGTGGACGGTATGATCATCAATCTAGCTAGTCTTTTGGCTGGGACCGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGCTCCCAAAGAGGCTCCATTAGAGGCTGCATCAGCTTGTCCTGGAGTTTATGCTAAAGGAGCTTATCCTGGCTACGCTGGAGACCTCTTGGTTGATGCTGCGACTGGTGCCAGCTACAACGCCAATGGTTTGAATGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCTTCAACCTCAACTTGTTCTACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

319

Amino Acids

33.82

Weight (kDa)

8.85

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	42 - 318	3.8e-123	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	62
AccB1I	GGYRCC	2 cut(s)	661, 866
AccII	CGCG	1 cut(s)	204
AcoI	YGGCCR	2 cut(s)	433, 614
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	511, 905
AfiI	CCNNNNNNNGG	3 cut(s)	346, 598, 635
AgsI	TTSAA	5 cut(s)	125, 190, 525, 892, 933
AjnI	CCWGG	3 cut(s)	756, 799, 826
AluBI	AGCT	7 cut(s)	372, 531, 552, 707, 794, 821, 873
AluI	AGCT	7 cut(s)	372, 531, 552, 707, 794, 821, 873
Alw21I	GWGCWC	2 cut(s)	48, 554
Alw26I	GTCTC	3 cut(s)	83, 581, 834
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	3 cut(s)	136, 433, 614
ApeKI	GCWGC	4 cut(s)	109, 422, 785, 857
ApoI	RAATTY	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
AspLEI	GCGC	2 cut(s)	204, 206
AspS9I	GGNCC	4 cut(s)	55, 137, 638, 723
AsuC2I	CCSGG	2 cut(s)	599, 600
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	3 cut(s)	55, 638, 723
BalI	TGGCCA	2 cut(s)	435, 616
BanI	GGYRCC	2 cut(s)	661, 866
BanII	GRGCYC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	2 cut(s)	48, 554
BbvI	GCAGC	4 cut(s)	121, 434, 772, 844
BccI	CCATC	5 cut(s)	170, 256, 271, 455, 479
BciT130I	CCWGG	3 cut(s)	758, 801, 828
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	2 cut(s)	599, 600
BcoDI	GTCTC	3 cut(s)	83, 581, 834
BfaI	CTAG	3 cut(s)	41, 704, 708
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	4 cut(s)	110, 423, 786, 858
BlpI	GCTNAGC	1 cut(s)	67
BlsI	GCNGC	4 cut(s)	111, 424, 787, 859
BmcAI	AGTACT	1 cut(s)	905
Bme1390I	CCNGG	5 cut(s)	599, 600, 758, 801, 828
Bme18I	GGWCC	3 cut(s)	55, 638, 723
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	4 cut(s)	55, 137, 638, 723
BmiI	GGNNCC	5 cut(s)	663, 724, 762, 774, 868
BmrFI	CCNGG	5 cut(s)	599, 600, 758, 801, 828
BmsI	GCATC	2 cut(s)	797, 844
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	4 cut(s)	359, 391, 361, 393
BpmI	CTGGAG	3 cut(s)	481, 822, 858
Bpu1102I	GCTNAGC	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	599, 600
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	2 cut(s)	581, 834
BsaJI	CCNNGG	2 cut(s)	426, 598
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 293, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 598, 635
Bse1I	ACTGG	2 cut(s)	154, 868
BseBI	CCWGG	3 cut(s)	758, 801, 828
BseDI	CCNNGG	2 cut(s)	426, 598
BseLI	CCNNNNNNNGG	3 cut(s)	346, 598, 635
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	154, 868
BsePI	GCGCGC	1 cut(s)	202
BseXI	GCAGC	4 cut(s)	121, 434, 772, 844
BseYI	CCCAGC	3 cut(s)	105, 198, 719
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	138, 435, 616
BshNI	GGYRCC	2 cut(s)	661, 866
BsiHKAI	GWGCWC	2 cut(s)	48, 554
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	599
BslFI	GGGAC	2 cut(s)	373, 736
BslI	CCNNNNNNNGG	3 cut(s)	346, 598, 635
BsmAI	GTCTC	3 cut(s)	83, 581, 834
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	373, 736
BsnI	GGCC	3 cut(s)	138, 435, 616
Bso31I	GGTCTC	2 cut(s)	581, 834
BsoBI	CYCGRG	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	48, 554
Bsp143I	GATC	2 cut(s)	171, 693
Bsp1720I	GCTNAGC	1 cut(s)	67
BspANI	GGCC	3 cut(s)	138, 435, 616
BspCNI	CTCAG	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	5 cut(s)	663, 724, 762, 774, 868
BspMI	ACCTGC	1 cut(s)	62
BspT107I	GGYRCC	2 cut(s)	661, 866
BspTNI	GGTCTC	2 cut(s)	581, 834
BsrI	ACTGG	2 cut(s)	154, 868
BssECI	CCNNGG	2 cut(s)	426, 598
BssHII	GCGCGC	1 cut(s)	202
BssMI	GATC	2 cut(s)	171, 693
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	3 cut(s)	758, 801, 828
Bst4CI	ACNGT	3 cut(s)	417, 689, 727
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	204, 871
BstDEI	CTNAG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	204, 206
BstKTI	GATC	2 cut(s)	174, 696
BstMAI	GTCTC	3 cut(s)	83, 581, 834
BstMBI	GATC	2 cut(s)	171, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 199, 791, 818, 866
BstNI	CCWGG	3 cut(s)	758, 801, 828
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	5 cut(s)	597, 598, 756, 799, 826
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	4 cut(s)	121, 434, 772, 844
BstV2I	GAAGAC	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	138, 435, 616
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	204, 871
CfoI	GCGC	2 cut(s)	204, 206
Cfr13I	GGNCC	4 cut(s)	55, 137, 638, 723
Cfr9I	CCCGGG	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	510, 904
CviAII	CATG	2 cut(s)	19, 276
CviQI	GTAC	2 cut(s)	510, 904
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	2 cut(s)	173, 695
DpnII	GATC	2 cut(s)	171, 693
EaeI	YGGCCR	2 cut(s)	433, 614
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	554
Eco31I	GGTCTC	2 cut(s)	581, 834
Eco47I	GGWCC	3 cut(s)	55, 638, 723
Eco53kI	GAGCTC	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	598
Eco91I	GGTNACC	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	552
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	756, 799, 826
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	22, 279
FaiI	YATR	7 cut(s)	20, 116, 180, 277, 636, 692, 810
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FaqI	GGGAC	2 cut(s)	373, 736
FatI	CATG	2 cut(s)	18, 275
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	110, 423, 786, 858
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	4 cut(s)	110, 423, 786, 858
FspBI	CTAG	3 cut(s)	41, 704, 708
GlaI	GCGC	2 cut(s)	203, 205
GluI	GCNGC	4 cut(s)	110, 423, 786, 858
GsaI	CCCAGC	3 cut(s)	109, 202, 723
GsuI	CTGGAG	3 cut(s)	481, 822, 858
HaeIII	GGCC	3 cut(s)	138, 435, 616
HapII	CCGG	1 cut(s)	599
HhaI	GCGC	2 cut(s)	204, 206
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	22, 279
Hin6I	GCGC	2 cut(s)	202, 204
HinP1I	GCGC	2 cut(s)	202, 204
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	512, 685
Hpy188I	TCNGA	6 cut(s)	97, 217, 472, 542, 578, 586
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	2 cut(s)	512, 685
HpyAV	CCTTC	1 cut(s)	939
HpyCH4III	ACNGT	3 cut(s)	417, 689, 727
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	22, 788
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 199, 791, 818, 866
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	22, 279
HspAI	GCGC	2 cut(s)	202, 204
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	2 cut(s)	171, 693
LmnI	GCTCC	5 cut(s)	500, 557, 766, 778, 818
Lsp1109I	GCAGC	4 cut(s)	121, 434, 772, 844
LweI	GCATC	2 cut(s)	797, 844
MaeI	CTAG	3 cut(s)	41, 704, 708
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	350, 727
MalI	GATC	2 cut(s)	173, 695
MboI	GATC	2 cut(s)	171, 693
MboII	GAAGA	4 cut(s)	134, 234, 513, 910
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	48, 554
MlsI	TGGCCA	2 cut(s)	435, 616
MluCI	AATT	5 cut(s)	23, 166, 185, 207, 480
MluNI	TGGCCA	2 cut(s)	435, 616
MmeI	TCCRAC	2 cut(s)	379, 556
Mox20I	TGGCCA	2 cut(s)	435, 616
MscI	TGGCCA	2 cut(s)	435, 616
Msp20I	TGGCCA	2 cut(s)	435, 616
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	5 cut(s)	599, 600, 758, 801, 828
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	3 cut(s)	758, 801, 828
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	5 cut(s)	11, 199, 791, 818, 866
NciI	CCSGG	2 cut(s)	599, 600
NdeII	GATC	2 cut(s)	171, 693
NlaIII	CATG	2 cut(s)	22, 279
NlaIV	GGNNCC	5 cut(s)	663, 724, 762, 774, 868
NmuCI	GTSAC	1 cut(s)	727
PauI	GCGCGC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	4 cut(s)	111, 424, 787, 859
Psp124BI	GAGCTC	1 cut(s)	554
Psp6I	CCWGG	3 cut(s)	756, 799, 826
PspEI	GGTNACC	1 cut(s)	350
PspFI	CCCAGC	3 cut(s)	105, 198, 719
PspGI	CCWGG	3 cut(s)	756, 799, 826
PspN4I	GGNNCC	5 cut(s)	663, 724, 762, 774, 868
PspPI	GGNCC	4 cut(s)	55, 137, 638, 723
PteI	GCGCGC	1 cut(s)	202
RsaI	GTAC	2 cut(s)	511, 905
RsaNI	GTAC	2 cut(s)	510, 904
SacI	GAGCTC	1 cut(s)	554
SatI	GCNGC	4 cut(s)	110, 423, 786, 858
Sau3AI	GATC	2 cut(s)	171, 693
Sau96I	GGNCC	4 cut(s)	55, 137, 638, 723
ScaI	AGTACT	1 cut(s)	905
ScrFI	CCNGG	5 cut(s)	599, 600, 758, 801, 828
SduI	GDGCHC	2 cut(s)	48, 554
SfaNI	GCATC	2 cut(s)	797, 844
SinI	GGWCC	3 cut(s)	55, 638, 723
SmaI	CCCGGG	1 cut(s)	600
Sse9I	AATT	5 cut(s)	23, 166, 185, 207, 480
SspMI	CTAG	3 cut(s)	41, 704, 708
SstI	GAGCTC	1 cut(s)	554
StyD4I	CCNGG	5 cut(s)	597, 598, 756, 799, 826
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	417, 689, 727
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	363
TasI	AATT	5 cut(s)	23, 166, 185, 207, 480
TatI	WGTACW	1 cut(s)	903
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	4 cut(s)	109, 422, 785, 857
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	7, 211, 526
TspMI	CCCGGG	1 cut(s)	598
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	3 cut(s)	55, 638, 723
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	2 cut(s)	632, 655
XmaI	CCCGGG	1 cut(s)	598
XspI	CTAG	3 cut(s)	41, 704, 708
ZraI	GACGTC	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.