Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007755.1

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 472

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007755.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 394 bp

atgcggtacacacgggtcttcaaagagctctttcatcagtggcaagagctccaagtttgcatacatatgggtcggaaactccgagacccaatgccctggtcaatgtgcttggccattccatcagccaatttacggaccacaatctccacctttggttgcacccaacaatgatgtgggtttggacggtatgatcatcaatctggctagccttttggcggggactgtgaccaacccttttggaaatggattctaccagggtcccaaagaggctccactagaggctgcttcggcttgtcctggtgtctatgggaaaggagcttatcctggttatgcaggagacctcttggttgatgctacaactggtacggtgctagctacaatgccaatggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

130

Amino Acids

13.36

Weight (kDa)

5.43

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 216
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	2 cut(s)	8, 365
AfiI	CCNNNNNNNGG	2 cut(s)	132, 215
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	4 cut(s)	95, 253, 296, 323
AluBI	AGCT	4 cut(s)	28, 49, 318, 375
AluI	AGCT	4 cut(s)	28, 49, 318, 375
Alw21I	GWGCWC	2 cut(s)	30, 51
Alw26I	GTCTC	2 cut(s)	78, 331
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	135, 258
AsuNHI	GCTAGC	2 cut(s)	204, 371
AvaII	GGWCC	2 cut(s)	135, 258
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	30, 51
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	30, 51
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	4 cut(s)	97, 255, 298, 325
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	78, 331
BfaI	CTAG	3 cut(s)	205, 276, 372
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	4 cut(s)	97, 255, 298, 325
Bme18I	GGWCC	2 cut(s)	135, 258
BmgT120I	GGNCC	2 cut(s)	135, 258
BmiI	GGNNCC	3 cut(s)	259, 260, 271
BmrFI	CCNGG	4 cut(s)	97, 255, 298, 325
BmsI	GCATC	1 cut(s)	341
BmtI	GCTAGC	2 cut(s)	208, 375
BpiI	GAAGAC	1 cut(s)	10
BsaI	GGTCTC	2 cut(s)	78, 331
BsaJI	CCNNGG	2 cut(s)	95, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 215
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	4 cut(s)	97, 255, 298, 325
BseDI	CCNNGG	2 cut(s)	95, 254
BseLI	CCNNNNNNNGG	2 cut(s)	132, 215
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	2 cut(s)	30, 51
BslFI	GGGAC	2 cut(s)	233, 244
BslI	CCNNNNNNNGG	2 cut(s)	132, 215
BsmAI	GTCTC	2 cut(s)	78, 331
BsmFI	GGGAC	2 cut(s)	233, 244
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	2 cut(s)	78, 331
Bsp1286I	GDGCHC	2 cut(s)	30, 51
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	4, 216
BspANI	GGCC	1 cut(s)	113
BspLI	GGNNCC	3 cut(s)	259, 260, 271
BspOI	GCTAGC	2 cut(s)	208, 375
BspTNI	GGTCTC	2 cut(s)	78, 331
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	95, 254
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	4 cut(s)	97, 255, 298, 325
Bst4CI	ACNGT	3 cut(s)	186, 224, 368
BstC8I	GCNNGC	2 cut(s)	206, 373
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	78, 331
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	4 cut(s)	97, 255, 298, 325
BstSCI	CCNGG	4 cut(s)	95, 253, 296, 323
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	10
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	206, 373
Cfr13I	GGNCC	2 cut(s)	135, 258
Csp6I	GTAC	2 cut(s)	7, 364
CviQI	GTAC	2 cut(s)	7, 364
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	111
Ecl136II	GAGCTC	2 cut(s)	28, 49
Eco24I	GRGCYC	2 cut(s)	30, 51
Eco31I	GGTCTC	2 cut(s)	78, 331
Eco47I	GGWCC	2 cut(s)	135, 258
Eco53kI	GAGCTC	2 cut(s)	28, 49
EcoICRI	GAGCTC	2 cut(s)	28, 49
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRII	CCWGG	4 cut(s)	95, 253, 296, 323
EcoT38I	GRGCYC	2 cut(s)	30, 51
FaiI	YATR	6 cut(s)	62, 66, 68, 189, 307, 331
FaqI	GGGAC	2 cut(s)	233, 244
FauI	CCCGC	1 cut(s)	209
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	283
FriOI	GRGCYC	2 cut(s)	30, 51
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	3 cut(s)	205, 276, 372
GluI	GCNGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	75, 83
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4III	ACNGT	3 cut(s)	186, 224, 368
HpyCH4V	TGCA	3 cut(s)	60, 159, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
KflI	GGGWCCC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	3 cut(s)	54, 275, 315
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	3 cut(s)	205, 276, 372
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	30, 51
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	3 cut(s)	260, 272, 351
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	113
MspR9I	CCNGG	4 cut(s)	97, 255, 298, 325
MvaI	CCWGG	4 cut(s)	97, 255, 298, 325
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	1 cut(s)	190
NheI	GCTAGC	2 cut(s)	204, 371
NlaIV	GGNNCC	3 cut(s)	259, 260, 271
NmuCI	GTSAC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	284
PpuMI	RGGWCCY	1 cut(s)	258
Psp124BI	GAGCTC	2 cut(s)	30, 51
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	4 cut(s)	95, 253, 296, 323
PspGI	CCWGG	4 cut(s)	95, 253, 296, 323
PspN4I	GGNNCC	3 cut(s)	259, 260, 271
PspPI	GGNCC	2 cut(s)	135, 258
PspPPI	RGGWCCY	1 cut(s)	258
RsaI	GTAC	2 cut(s)	8, 365
RsaNI	GTAC	2 cut(s)	7, 364
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	2 cut(s)	30, 51
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	135, 258
ScrFI	CCNGG	4 cut(s)	97, 255, 298, 325
SduI	GDGCHC	2 cut(s)	30, 51
SetI	ASST	6 cut(s)	30, 51, 152, 320, 343, 377
SfaNI	GCATC	1 cut(s)	341
SinI	GGWCC	2 cut(s)	135, 258
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	4, 216
SspMI	CTAG	3 cut(s)	205, 276, 372
SstI	GAGCTC	2 cut(s)	30, 51
StyD4I	CCNGG	4 cut(s)	95, 253, 296, 323
TaaI	ACNGT	3 cut(s)	186, 224, 368
TasI	AATT	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	135, 258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	3 cut(s)	205, 276, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.