Rh7BG446300

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000422
Physical Location & Seq
Reverse (-)
52022952 .. 52024112
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG446300.1

Sequence Viewer

Length: 963 bp
ATGGCTGCTTTTGATTCCTCTTATCTTCTTCTACAACTACTCCTGCTCATCTCTTTGTTCCATTTTGGCTCAGCAGCTAGAAGCCTTGCTGAGACCTCAGACCAAACCCAGCAGCCTATACTATTCCAATATCACAATGGCCCTCTTCTCACTGGCAAAATCTCTATCAATTTGATCTGGTATGGAAATTTCAAGCCTTCGCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAAAAATACTACCACCTCTCCAATGCCAAGAAAACCTCATCTCTTTCCCTCTCATTGGGTAACCAAATACTTGATGAGAGCTACTCTCTAGGCAAGTCCCTATCTGTTGGAAAACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGGGTAATGCCATCAATGTTGTCTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCCAGCAAATGTGGTACACACGGGTCTTCAAAAAGCTCTTTCAACAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCTGAGACCCAATGCCCCGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCGCCCAACAATGATGTGGGTTTGGACGGTATGGTCATCAATCTAGCTGGCCTTTTGGCGGGGACTGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCATCAGCTTGTCCCGGAGTTTATGCTAAAGGAGCTTATCCTGGTTACGCCGGAGACCTCTTGGTTGATGCTACGACTGGTGCCAGCTACAACGCCAATGGTTTGAATGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCTTCAACCTCATCATGTTCTACTCTTGTTTGA

Protein Analysis

320

Amino Acids

33.91

Weight (kDa)

8.62

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 43 - 319 6.7e-123 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 695
AccB1I GGYRCC 1 cut(s) 869
AccII CGCG 1 cut(s) 207
AciI CCGC 1 cut(s) 722
AcoI YGGCCR 2 cut(s) 436, 617
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 2 cut(s) 514, 908
AfiI CCNNNNNNNGG 3 cut(s) 349, 638, 721
AgsI TTSAA 5 cut(s) 193, 528, 541, 895, 936
AjnI CCWGG 3 cut(s) 438, 759, 829
AluBI AGCT 8 cut(s) 77, 375, 534, 555, 710, 797, 824, 876
AluI AGCT 8 cut(s) 77, 375, 534, 555, 710, 797, 824, 876
Alw21I GWGCWC 1 cut(s) 557
Alw26I GTCTC 3 cut(s) 86, 584, 837
AoxI GGCC 4 cut(s) 139, 436, 617, 712
ApeKI GCWGC 6 cut(s) 5, 74, 112, 202, 425, 788
ApoI RAATTY 1 cut(s) 187
AspLEI GCGC 3 cut(s) 207, 209, 667
AspS9I GGNCC 3 cut(s) 140, 641, 764
AsuC2I CCSGG 2 cut(s) 603, 804
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 641, 764
BalI TGGCCA 2 cut(s) 438, 619
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 557
BbvI GCAGC 5 cut(s) 86, 124, 214, 437, 775
BccI CCATC 5 cut(s) 259, 274, 458, 482, 633
BciT130I CCWGG 3 cut(s) 440, 761, 831
BcnI CCSGG 2 cut(s) 603, 804
BcoDI GTCTC 3 cut(s) 86, 584, 837
BfaI CTAG 3 cut(s) 78, 383, 707
BisI GCNGC 6 cut(s) 6, 75, 113, 203, 426, 789
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 6 cut(s) 7, 76, 114, 204, 427, 790
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 5 cut(s) 440, 603, 761, 804, 831
Bme18I GGWCC 2 cut(s) 641, 764
BmgT120I GGNCC 3 cut(s) 140, 641, 764
BmiI GGNNCC 4 cut(s) 765, 766, 777, 871
BmrFI CCNGG 5 cut(s) 440, 603, 761, 804, 831
BmsI GCATC 2 cut(s) 800, 847
BpiI GAAGAC 1 cut(s) 516
BplI GAGNNNNNCTC 4 cut(s) 362, 394, 364, 396
BpmI CTGGAG 1 cut(s) 484
Bpu1102I GCTNAGC 1 cut(s) 70
BpuMI CCSGG 2 cut(s) 603, 804
BsaI GGTCTC 3 cut(s) 86, 584, 837
BsaJI CCNNGG 4 cut(s) 429, 439, 601, 760
BsaXI ACNNNNNCTCC 6 cut(s) 24, 54, 232, 262, 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 638, 721
Bse1I ACTGG 2 cut(s) 157, 871
BseBI CCWGG 3 cut(s) 440, 761, 831
BseDI CCNNGG 4 cut(s) 429, 439, 601, 760
BseLI CCNNNNNNNGG 3 cut(s) 349, 638, 721
BseMII CTCAG 4 cut(s) 81, 84, 111, 579
BseNI ACTGG 2 cut(s) 157, 871
BsePI GCGCGC 1 cut(s) 205
BseXI GCAGC 5 cut(s) 86, 124, 214, 437, 775
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 4 cut(s) 141, 438, 619, 714
BshNI GGYRCC 1 cut(s) 869
BsiHKAI GWGCWC 1 cut(s) 557
BsiSI CCGG 3 cut(s) 603, 804, 840
BslFI GGGAC 4 cut(s) 376, 739, 750, 786
BslI CCNNNNNNNGG 3 cut(s) 349, 638, 721
BsmAI GTCTC 3 cut(s) 86, 584, 837
BsmFI GGGAC 4 cut(s) 376, 739, 750, 786
BsnI GGCC 4 cut(s) 141, 438, 619, 714
Bso31I GGTCTC 3 cut(s) 86, 584, 837
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 1 cut(s) 174
Bsp1720I GCTNAGC 1 cut(s) 70
BspACI CCGC 1 cut(s) 722
BspANI GGCC 4 cut(s) 141, 438, 619, 714
BspCNI CTCAG 4 cut(s) 82, 83, 110, 580
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 4 cut(s) 765, 766, 777, 871
BspT107I GGYRCC 1 cut(s) 869
BspTNI GGTCTC 3 cut(s) 86, 584, 837
BsrI ACTGG 2 cut(s) 157, 871
BssECI CCNNGG 4 cut(s) 429, 439, 601, 760
BssHII GCGCGC 1 cut(s) 205
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 3 cut(s) 440, 761, 831
Bst4CI ACNGT 3 cut(s) 420, 692, 730
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 3 cut(s) 207, 712, 874
BstDEI CTNAG 4 cut(s) 70, 90, 97, 588
BstEII GGTNACC 1 cut(s) 353
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 3 cut(s) 207, 209, 667
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 3 cut(s) 86, 584, 837
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 202, 794, 821
BstNI CCWGG 3 cut(s) 440, 761, 831
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 5 cut(s) 438, 601, 759, 802, 829
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 5 cut(s) 86, 124, 214, 437, 775
BstV2I GAAGAC 1 cut(s) 516
BsuRI GGCC 4 cut(s) 141, 438, 619, 714
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 207, 712, 874
CfoI GCGC 3 cut(s) 207, 209, 667
Cfr13I GGNCC 3 cut(s) 140, 641, 764
Csp6I GTAC 2 cut(s) 513, 907
CviAII CATG 2 cut(s) 279, 945
CviQI GTAC 2 cut(s) 513, 907
DdeI CTNAG 4 cut(s) 70, 90, 97, 588
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DrdI GACNNNNNNGTC 1 cut(s) 695
DseDI GACNNNNNNGTC 1 cut(s) 695
EaeI YGGCCR 2 cut(s) 436, 617
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 557
Eco31I GGTCTC 3 cut(s) 86, 584, 837
Eco47I GGWCC 2 cut(s) 641, 764
Eco53kI GAGCTC 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 764
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 3 cut(s) 438, 759, 829
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 2 cut(s) 282, 948
FaiI YATR 7 cut(s) 119, 183, 280, 293, 695, 813, 946
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 4 cut(s) 376, 739, 750, 786
FatI CATG 2 cut(s) 278, 944
FauI CCCGC 1 cut(s) 715
Fnu4HI GCNGC 6 cut(s) 6, 75, 113, 203, 426, 789
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 6 cut(s) 6, 75, 113, 203, 426, 789
FspBI CTAG 3 cut(s) 78, 383, 707
GlaI GCGC 3 cut(s) 206, 208, 666
GluI GCNGC 6 cut(s) 6, 75, 113, 203, 426, 789
GsaI CCCAGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 484
HaeIII GGCC 4 cut(s) 141, 438, 619, 714
HapII CCGG 3 cut(s) 603, 804, 840
HhaI GCGC 3 cut(s) 207, 209, 667
Hin1II CATG 2 cut(s) 282, 948
Hin6I GCGC 3 cut(s) 205, 207, 665
HinP1I GCGC 3 cut(s) 205, 207, 665
HinfI GANTC 1 cut(s) 14
HpaII CCGG 3 cut(s) 603, 804, 840
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 5 cut(s) 100, 220, 475, 581, 589
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 2 cut(s) 207, 942
HpyCH4III ACNGT 3 cut(s) 420, 692, 730
HpyCH4V TGCA 1 cut(s) 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 794, 821
HpyF3I CTNAG 4 cut(s) 70, 90, 97, 588
Hsp92II CATG 2 cut(s) 282, 948
HspAI GCGC 3 cut(s) 205, 207, 665
KflI GGGWCCC 1 cut(s) 764
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 4 cut(s) 503, 560, 781, 821
Lsp1109I GCAGC 5 cut(s) 86, 124, 214, 437, 775
LweI GCATC 2 cut(s) 800, 847
MaeI CTAG 3 cut(s) 78, 383, 707
MaeIII GTNAC 3 cut(s) 353, 730, 833
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 6 cut(s) 17, 20, 137, 237, 516, 913
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 557
MlsI TGGCCA 2 cut(s) 438, 619
MluCI AATT 5 cut(s) 169, 187, 210, 483, 633
MluNI TGGCCA 2 cut(s) 438, 619
MmeI TCCRAC 2 cut(s) 382, 559
Mox20I TGGCCA 2 cut(s) 438, 619
MscI TGGCCA 2 cut(s) 438, 619
Msp20I TGGCCA 2 cut(s) 438, 619
MspI CCGG 3 cut(s) 603, 804, 840
MspR9I CCNGG 5 cut(s) 440, 603, 761, 804, 831
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 3 cut(s) 440, 761, 831
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 202, 794, 821
NciI CCSGG 2 cut(s) 603, 804
NdeII GATC 1 cut(s) 174
NlaIII CATG 2 cut(s) 282, 948
NlaIV GGNNCC 4 cut(s) 765, 766, 777, 871
NmuCI GTSAC 1 cut(s) 730
PauI GCGCGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 802
PkrI GCNGC 6 cut(s) 7, 76, 114, 204, 427, 790
PpuMI RGGWCCY 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 557
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 438, 759, 829
PspEI GGTNACC 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 3 cut(s) 438, 759, 829
PspN4I GGNNCC 4 cut(s) 765, 766, 777, 871
PspPI GGNCC 3 cut(s) 140, 641, 764
PspPPI RGGWCCY 1 cut(s) 764
PteI GCGCGC 1 cut(s) 205
RsaI GTAC 2 cut(s) 514, 908
RsaNI GTAC 2 cut(s) 513, 907
SacI GAGCTC 1 cut(s) 557
SatI GCNGC 6 cut(s) 6, 75, 113, 203, 426, 789
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 3 cut(s) 140, 641, 764
ScaI AGTACT 1 cut(s) 908
ScrFI CCNGG 5 cut(s) 440, 603, 761, 804, 831
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 2 cut(s) 800, 847
SinI GGWCC 2 cut(s) 641, 764
Sse9I AATT 5 cut(s) 169, 187, 210, 483, 633
SsiI CCGC 1 cut(s) 722
SspMI CTAG 3 cut(s) 78, 383, 707
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 5 cut(s) 438, 601, 759, 802, 829
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 420, 692, 730
TasI AATT 5 cut(s) 169, 187, 210, 483, 633
TatI WGTACW 1 cut(s) 906
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 6 cut(s) 5, 74, 112, 202, 425, 788
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 641, 764
XapI RAATTY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 2 cut(s) 134, 676
XspI CTAG 3 cut(s) 78, 383, 707
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.