Rh7BG446200

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000422
Physical Location & Seq
Reverse (-)
51992839 .. 51993918
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG446200.1

Sequence Viewer

Length: 963 bp
ATGGCTTCTTTTGCTTCCTCTTATCTACTTCTACAACTAGTCCTGCTCATCTCTTTGTTCTATTTTGGCTCAGCAGCTAGGAGCCTTGCTGAGACCTCAGACCAAACCCAGCAGCCTATACTATTCCAATACCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGAAAATTCAAGCCCTCCCAGCGAGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAGAAATACTACCACCTCTCCAATGCCAAGAAAACCTCATCTCTTTCCCTCTCATTGGGTACCCAAATCCTCGACGAGAGCTACTCTATGGGCAAGTCCCTATCTGTTGGCAAACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTCTTGACCTCATCAGATGTTCTAATTGATGGGTTCTGCTCCAGCAAATGTGGTACACACGGGTCTTCAAAGAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGTCCCGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCCAACAATGATGTGGGTTTGGACGGTATGCTCATCAATCTAGCTAGTCTTTTGGCGGGGACTGTGACCAACCCTTTTGGAAATGGGTTCTACCAAGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCTGGTGTCTATGGGAAAGGAGCTTATCCTGGTTACGCCGGAGACCTCTTGGTTGATGCTACAACTGGTGCCAGCTACAACGCCAATGGTTTGAATGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCTTCAACCTCAACTTGTTCTACTCTTGTTTGA

Protein Analysis

320

Amino Acids

33.99

Weight (kDa)

8.88

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 43 - 319 8.1e-124 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 2 cut(s) 353, 869
AciI CCGC 1 cut(s) 722
AcoI YGGCCR 2 cut(s) 436, 617
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 3 cut(s) 355, 514, 908
AfiI CCNNNNNNNGG 2 cut(s) 349, 638
AgsI TTSAA 4 cut(s) 193, 528, 895, 936
AhdI GACNNNNNGTC 1 cut(s) 597
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 2 cut(s) 802, 829
AluBI AGCT 7 cut(s) 77, 375, 534, 555, 710, 824, 876
AluI AGCT 7 cut(s) 77, 375, 534, 555, 710, 824, 876
Alw21I GWGCWC 2 cut(s) 536, 557
Alw26I GTCTC 3 cut(s) 86, 584, 837
AoxI GGCC 3 cut(s) 139, 436, 617
ApeKI GCWGC 4 cut(s) 74, 112, 425, 788
ApoI RAATTY 1 cut(s) 188
Asp718I GGTACC 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 140, 641, 764
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 641, 764
BalI TGGCCA 2 cut(s) 438, 619
BanI GGYRCC 2 cut(s) 353, 869
BanII GRGCYC 2 cut(s) 536, 557
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 536, 557
BbvI GCAGC 4 cut(s) 86, 124, 437, 775
BccI CCATC 6 cut(s) 173, 259, 274, 458, 482, 633
BciT130I CCWGG 2 cut(s) 804, 831
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 3 cut(s) 86, 584, 837
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 4 cut(s) 38, 78, 707, 711
BisI GCNGC 4 cut(s) 75, 113, 426, 789
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 4 cut(s) 76, 114, 427, 790
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 3 cut(s) 603, 804, 831
Bme18I GGWCC 2 cut(s) 641, 764
BmeRI GACNNNNNGTC 1 cut(s) 597
BmgT120I GGNCC 3 cut(s) 140, 641, 764
BmiI GGNNCC 5 cut(s) 83, 355, 766, 777, 871
BmrFI CCNGG 3 cut(s) 603, 804, 831
BmsI GCATC 1 cut(s) 847
BpiI GAAGAC 1 cut(s) 516
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpmI CTGGAG 1 cut(s) 484
Bpu1102I GCTNAGC 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 603
BsaI GGTCTC 3 cut(s) 86, 584, 837
BsaJI CCNNGG 2 cut(s) 429, 760
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 296, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 638
Bse1I ACTGG 2 cut(s) 157, 871
BseBI CCWGG 2 cut(s) 804, 831
BseDI CCNNGG 2 cut(s) 429, 760
BseLI CCNNNNNNNGG 2 cut(s) 349, 638
BseMII CTCAG 3 cut(s) 81, 84, 111
BseNI ACTGG 2 cut(s) 157, 871
BseXI GCAGC 4 cut(s) 86, 124, 437, 775
BseYI CCCAGC 2 cut(s) 108, 201
BshFI GGCC 3 cut(s) 141, 438, 619
BshNI GGYRCC 2 cut(s) 353, 869
BsiHKAI GWGCWC 2 cut(s) 536, 557
BsiSI CCGG 2 cut(s) 603, 840
BslFI GGGAC 4 cut(s) 376, 585, 739, 750
BslI CCNNNNNNNGG 2 cut(s) 349, 638
BsmAI GTCTC 3 cut(s) 86, 584, 837
BsmFI GGGAC 4 cut(s) 376, 585, 739, 750
BsnI GGCC 3 cut(s) 141, 438, 619
Bso31I GGTCTC 3 cut(s) 86, 584, 837
Bsp1286I GDGCHC 2 cut(s) 536, 557
Bsp143I GATC 1 cut(s) 174
Bsp1720I GCTNAGC 1 cut(s) 70
BspACI CCGC 1 cut(s) 722
BspANI GGCC 3 cut(s) 141, 438, 619
BspCNI CTCAG 3 cut(s) 82, 83, 110
BspLI GGNNCC 5 cut(s) 83, 355, 766, 777, 871
BspT107I GGYRCC 2 cut(s) 353, 869
BspTNI GGTCTC 3 cut(s) 86, 584, 837
BsrI ACTGG 2 cut(s) 157, 871
BssECI CCNNGG 2 cut(s) 429, 760
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 429, 760
Bst2UI CCWGG 2 cut(s) 804, 831
Bst4CI ACNGT 3 cut(s) 420, 692, 730
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 207, 874
BstDEI CTNAG 3 cut(s) 70, 90, 97
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 3 cut(s) 86, 584, 837
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 11, 202, 794
BstNI CCWGG 2 cut(s) 804, 831
BstSCI CCNGG 3 cut(s) 601, 802, 829
BstV1I GCAGC 4 cut(s) 86, 124, 437, 775
BstV2I GAAGAC 1 cut(s) 516
BsuRI GGCC 3 cut(s) 141, 438, 619
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 207, 874
Cfr13I GGNCC 3 cut(s) 140, 641, 764
Csp6I GTAC 3 cut(s) 354, 513, 907
CviAII CATG 1 cut(s) 279
CviQI GTAC 3 cut(s) 354, 513, 907
DdeI CTNAG 3 cut(s) 70, 90, 97
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DriI GACNNNNNGTC 1 cut(s) 597
EaeI YGGCCR 2 cut(s) 436, 617
Eam1104I CTCTTC 1 cut(s) 150
Eam1105I GACNNNNNGTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 150
Ecl136II GAGCTC 2 cut(s) 534, 555
Eco130I CCWWGG 2 cut(s) 429, 760
Eco24I GRGCYC 2 cut(s) 536, 557
Eco31I GGTCTC 3 cut(s) 86, 584, 837
Eco47I GGWCC 2 cut(s) 641, 764
Eco53kI GAGCTC 2 cut(s) 534, 555
EcoICRI GAGCTC 2 cut(s) 534, 555
EcoO109I RGGNCCY 1 cut(s) 764
EcoRII CCWGG 2 cut(s) 802, 829
EcoT14I CCWWGG 2 cut(s) 429, 760
EcoT38I GRGCYC 2 cut(s) 536, 557
ErhI CCWWGG 2 cut(s) 429, 760
FaeI CATG 1 cut(s) 282
FaiI YATR 7 cut(s) 119, 183, 280, 293, 383, 695, 813
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 4 cut(s) 376, 585, 739, 750
FatI CATG 1 cut(s) 278
FauI CCCGC 1 cut(s) 715
Fnu4HI GCNGC 4 cut(s) 75, 113, 426, 789
FriOI GRGCYC 2 cut(s) 536, 557
Fsp4HI GCNGC 4 cut(s) 75, 113, 426, 789
FspBI CTAG 4 cut(s) 38, 78, 707, 711
GluI GCNGC 4 cut(s) 75, 113, 426, 789
GsaI CCCAGC 2 cut(s) 112, 205
GsuI CTGGAG 1 cut(s) 484
HaeIII GGCC 3 cut(s) 141, 438, 619
HapII CCGG 2 cut(s) 603, 840
Hin1II CATG 1 cut(s) 282
HpaII CCGG 2 cut(s) 603, 840
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 6 cut(s) 100, 220, 475, 545, 581, 589
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 1 cut(s) 515
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 942
HpyCH4III ACNGT 3 cut(s) 420, 692, 730
HpyCH4V TGCA 1 cut(s) 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 202, 794
HpyF3I CTNAG 3 cut(s) 70, 90, 97
Hsp92II CATG 1 cut(s) 282
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 5 cut(s) 81, 503, 560, 781, 821
Lsp1109I GCAGC 4 cut(s) 86, 124, 437, 775
LweI GCATC 1 cut(s) 847
MaeI CTAG 4 cut(s) 38, 78, 707, 711
MaeIII GTNAC 2 cut(s) 730, 833
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 4 cut(s) 137, 237, 516, 913
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 536, 557
MlsI TGGCCA 2 cut(s) 438, 619
MluCI AATT 5 cut(s) 169, 188, 210, 483, 633
MluNI TGGCCA 2 cut(s) 438, 619
MmeI TCCRAC 1 cut(s) 559
Mox20I TGGCCA 2 cut(s) 438, 619
MscI TGGCCA 2 cut(s) 438, 619
Msp20I TGGCCA 2 cut(s) 438, 619
MspI CCGG 2 cut(s) 603, 840
MspR9I CCNGG 3 cut(s) 603, 804, 831
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 2 cut(s) 804, 831
MwoI GCNNNNNNNGC 3 cut(s) 11, 202, 794
NciI CCSGG 1 cut(s) 603
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 5 cut(s) 83, 355, 766, 777, 871
NmuCI GTSAC 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PkrI GCNGC 4 cut(s) 76, 114, 427, 790
PpuMI RGGWCCY 1 cut(s) 764
Psp124BI GAGCTC 2 cut(s) 536, 557
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 802, 829
PspFI CCCAGC 2 cut(s) 108, 201
PspGI CCWGG 2 cut(s) 802, 829
PspN4I GGNNCC 5 cut(s) 83, 355, 766, 777, 871
PspPI GGNCC 3 cut(s) 140, 641, 764
PspPPI RGGWCCY 1 cut(s) 764
RsaI GTAC 3 cut(s) 355, 514, 908
RsaNI GTAC 3 cut(s) 354, 513, 907
SacI GAGCTC 2 cut(s) 536, 557
SatI GCNGC 4 cut(s) 75, 113, 426, 789
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 3 cut(s) 140, 641, 764
ScaI AGTACT 1 cut(s) 908
ScrFI CCNGG 3 cut(s) 603, 804, 831
SduI GDGCHC 2 cut(s) 536, 557
SfaNI GCATC 1 cut(s) 847
SinI GGWCC 2 cut(s) 641, 764
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 5 cut(s) 169, 188, 210, 483, 633
SsiI CCGC 1 cut(s) 722
SspMI CTAG 4 cut(s) 38, 78, 707, 711
SstI GAGCTC 2 cut(s) 536, 557
StyD4I CCNGG 3 cut(s) 601, 802, 829
StyI CCWWGG 2 cut(s) 429, 760
TaaI ACNGT 3 cut(s) 420, 692, 730
TaqI TCGA 1 cut(s) 366
TasI AATT 5 cut(s) 169, 188, 210, 483, 633
TatI WGTACW 1 cut(s) 906
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 4 cut(s) 74, 112, 425, 788
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 2 cut(s) 214, 529
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 641, 764
XapI RAATTY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 2 cut(s) 134, 676
XspI CTAG 4 cut(s) 38, 78, 707, 711
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.