RLG00000000844

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000422
Physical Location & Seq
Forward (+)
6519451 .. 6520410
960 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000844

Sequence Viewer

Length: 960 bp
ATGGTTTCTTCTTCTTCCAAACAACTCTTTTCCTTTGTTCTGCTTCTCTCTCTTTTCCATATTAGCTCAGCAGCTAGGAGCCTTGCTGAGACCTCAGATCAAACCCAACAGCCTATACTCTTCCAATACCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGCAAATTCAAGCCTTCCCAGCGCACAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGGGAAATACTACCACCTCTCCAATGCCAAGAAAACCTCATCTATTTCCCTCTCATTGGGTAACCAAATCCTCGATGAGAGCTACTCCCTGGGCAAGTCCCTATCTGTTGGAAAACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCCAGCAAATGTGGTACACACGGGTCTTCAAAGAGCTCTTTAATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCTGAGACCCAATGCCCGGGTCAATGCGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCCAACAATGATGTGGGTTTGGACGGTATGATCATCAATCTAGCTGGCCTTTTGGCGGGGACAGTGACCAACCCTTTCGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCCGGTGTCTATGGGAAAGGAGCATATCCTGGTTATGCTGGAGACCTCTTGGTTGATGCTACAACTGGTGCTAGCTACAATGCAAATGGTCTGAGTGGGAAGAAGTACTTGCTTCCTGCCCTGTTTGATCCCTCAACCTCAACTTGTTCGACTGTTGTTTGA

Protein Analysis

320

Amino Acids

33.71

Weight (kDa)

9.1

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 42 - 317 9.9e-123 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 719
AclWI GGATC 1 cut(s) 920
AcoI YGGCCR 2 cut(s) 433, 614
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 2 cut(s) 511, 905
AfiI CCNNNNNNNGG 4 cut(s) 346, 598, 635, 718
AgsI TTSAA 2 cut(s) 190, 525
AjnI CCWGG 3 cut(s) 378, 756, 826
AluBI AGCT 7 cut(s) 66, 74, 372, 531, 552, 707, 873
AluI AGCT 7 cut(s) 66, 74, 372, 531, 552, 707, 873
Alw21I GWGCWC 2 cut(s) 533, 554
Alw26I GTCTC 3 cut(s) 83, 581, 834
AlwI GGATC 1 cut(s) 920
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 4 cut(s) 136, 433, 614, 709
ApeKI GCWGC 3 cut(s) 71, 422, 785
ApoI RAATTY 1 cut(s) 185
AspLEI GCGC 2 cut(s) 204, 611
AspS9I GGNCC 3 cut(s) 137, 638, 761
AsuC2I CCSGG 3 cut(s) 599, 600, 801
AsuHPI GGTGA 1 cut(s) 217
AsuNHI GCTAGC 1 cut(s) 869
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 2 cut(s) 638, 761
BalI TGGCCA 2 cut(s) 435, 616
BanII GRGCYC 2 cut(s) 533, 554
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 2 cut(s) 533, 554
BbvI GCAGC 3 cut(s) 83, 434, 772
BccI CCATC 6 cut(s) 170, 256, 271, 455, 479, 630
BciT130I CCWGG 3 cut(s) 380, 758, 828
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 3 cut(s) 599, 600, 801
BcoDI GTCTC 3 cut(s) 83, 581, 834
BfaI CTAG 3 cut(s) 75, 704, 870
BisI GCNGC 3 cut(s) 72, 423, 786
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 73, 424, 787
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 6 cut(s) 380, 599, 600, 758, 801, 828
Bme18I GGWCC 2 cut(s) 638, 761
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 3 cut(s) 137, 638, 761
BmiI GGNNCC 4 cut(s) 80, 762, 763, 774
BmrFI CCNGG 6 cut(s) 380, 599, 600, 758, 801, 828
BmsI GCATC 1 cut(s) 844
BmtI GCTAGC 1 cut(s) 873
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpmI CTGGAG 2 cut(s) 481, 858
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 3 cut(s) 599, 600, 801
BsaI GGTCTC 3 cut(s) 83, 581, 834
BsaJI CCNNGG 5 cut(s) 378, 379, 426, 598, 757
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 293, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 598, 635, 718
Bse1I ACTGG 2 cut(s) 154, 868
BseBI CCWGG 3 cut(s) 380, 758, 828
BseDI CCNNGG 5 cut(s) 378, 379, 426, 598, 757
BseLI CCNNNNNNNGG 4 cut(s) 346, 598, 635, 718
BseMII CTCAG 5 cut(s) 78, 81, 108, 576, 881
BseNI ACTGG 2 cut(s) 154, 868
BseXI GCAGC 3 cut(s) 83, 434, 772
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 4 cut(s) 138, 435, 616, 711
BsiHKAI GWGCWC 2 cut(s) 533, 554
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 2 cut(s) 599, 801
BslFI GGGAC 4 cut(s) 373, 736, 747, 783
BslI CCNNNNNNNGG 4 cut(s) 346, 598, 635, 718
BsmAI GTCTC 3 cut(s) 83, 581, 834
BsmFI GGGAC 4 cut(s) 373, 736, 747, 783
BsnI GGCC 4 cut(s) 138, 435, 616, 711
Bso31I GGTCTC 3 cut(s) 83, 581, 834
BsoBI CYCGRG 1 cut(s) 598
Bsp1286I GDGCHC 2 cut(s) 533, 554
Bsp143I GATC 4 cut(s) 97, 171, 693, 925
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 1 cut(s) 719
BspANI GGCC 4 cut(s) 138, 435, 616, 711
BspCNI CTCAG 5 cut(s) 79, 80, 107, 577, 882
BspLI GGNNCC 4 cut(s) 80, 762, 763, 774
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 1 cut(s) 920
BspTNI GGTCTC 3 cut(s) 83, 581, 834
BsrI ACTGG 2 cut(s) 154, 868
BssECI CCNNGG 5 cut(s) 378, 379, 426, 598, 757
BssMI GATC 4 cut(s) 97, 171, 693, 925
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 3 cut(s) 380, 758, 828
Bst4CI ACNGT 4 cut(s) 417, 689, 727, 952
Bst6I CTCTTC 2 cut(s) 125, 147
BstC8I GCNNGC 2 cut(s) 709, 871
BstDEI CTNAG 5 cut(s) 67, 87, 94, 585, 890
BstEII GGTNACC 1 cut(s) 350
BstHHI GCGC 2 cut(s) 204, 611
BstKTI GATC 4 cut(s) 100, 174, 696, 928
BstMAI GTCTC 3 cut(s) 83, 581, 834
BstMBI GATC 4 cut(s) 97, 171, 693, 925
BstMWI GCNNNNNNNGC 2 cut(s) 199, 791
BstNI CCWGG 3 cut(s) 380, 758, 828
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 378, 597, 598, 756, 799, 826
BstV1I GCAGC 3 cut(s) 83, 434, 772
BstV2I GAAGAC 1 cut(s) 513
BsuRI GGCC 4 cut(s) 138, 435, 616, 711
BtsIMutI CAGTG 2 cut(s) 147, 732
Cac8I GCNNGC 2 cut(s) 709, 871
CfoI GCGC 2 cut(s) 204, 611
Cfr13I GGNCC 3 cut(s) 137, 638, 761
Cfr9I CCCGGG 1 cut(s) 598
Csp6I GTAC 2 cut(s) 510, 904
CviAII CATG 1 cut(s) 276
CviQI GTAC 2 cut(s) 510, 904
DdeI CTNAG 5 cut(s) 67, 87, 94, 585, 890
DpnI GATC 4 cut(s) 99, 173, 695, 927
DpnII GATC 4 cut(s) 97, 171, 693, 925
EaeI YGGCCR 2 cut(s) 433, 614
Eam1104I CTCTTC 2 cut(s) 125, 147
EarI CTCTTC 2 cut(s) 125, 147
Ecl136II GAGCTC 2 cut(s) 531, 552
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 533, 554
Eco31I GGTCTC 3 cut(s) 83, 581, 834
Eco47I GGWCC 2 cut(s) 638, 761
Eco53kI GAGCTC 2 cut(s) 531, 552
Eco88I CYCGRG 1 cut(s) 598
Eco91I GGTNACC 1 cut(s) 350
EcoICRI GAGCTC 2 cut(s) 531, 552
EcoO109I RGGNCCY 1 cut(s) 761
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 3 cut(s) 378, 756, 826
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 533, 554
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 279
FaiI YATR 9 cut(s) 60, 116, 180, 277, 290, 692, 810, 823, 834
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 4 cut(s) 373, 736, 747, 783
FatI CATG 1 cut(s) 275
FauI CCCGC 1 cut(s) 712
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 72, 423, 786
FriOI GRGCYC 2 cut(s) 533, 554
Fsp4HI GCNGC 3 cut(s) 72, 423, 786
FspBI CTAG 3 cut(s) 75, 704, 870
GlaI GCGC 2 cut(s) 203, 610
GluI GCNGC 3 cut(s) 72, 423, 786
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 2 cut(s) 481, 858
HaeIII GGCC 4 cut(s) 138, 435, 616, 711
HapII CCGG 2 cut(s) 599, 801
HhaI GCGC 2 cut(s) 204, 611
Hin1II CATG 1 cut(s) 279
Hin6I GCGC 2 cut(s) 202, 609
HinP1I GCGC 2 cut(s) 202, 609
HpaII CCGG 2 cut(s) 599, 801
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 8 cut(s) 97, 217, 472, 542, 578, 586, 743, 891
Hpy8I GTNNAC 1 cut(s) 512
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 4 cut(s) 417, 689, 727, 952
HpyCH4V TGCA 2 cut(s) 662, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 791
HpyF3I CTNAG 5 cut(s) 67, 87, 94, 585, 890
Hsp92II CATG 1 cut(s) 279
HspAI GCGC 2 cut(s) 202, 609
KflI GGGWCCC 1 cut(s) 761
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 4 cut(s) 97, 171, 693, 925
LmnI GCTCC 5 cut(s) 78, 500, 557, 778, 818
Lsp1109I GCAGC 3 cut(s) 83, 434, 772
LweI GCATC 1 cut(s) 844
MaeI CTAG 3 cut(s) 75, 704, 870
MaeIII GTNAC 2 cut(s) 350, 727
MalI GATC 4 cut(s) 99, 173, 695, 927
MboI GATC 4 cut(s) 97, 171, 693, 925
MboII GAAGA 7 cut(s) 3, 6, 112, 134, 234, 513, 910
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 533, 554
MlsI TGGCCA 2 cut(s) 435, 616
MluCI AATT 5 cut(s) 166, 185, 207, 480, 630
MluNI TGGCCA 2 cut(s) 435, 616
MmeI TCCRAC 2 cut(s) 379, 556
Mox20I TGGCCA 2 cut(s) 435, 616
MscI TGGCCA 2 cut(s) 435, 616
MseI TTAA 1 cut(s) 536
Msp20I TGGCCA 2 cut(s) 435, 616
MspI CCGG 2 cut(s) 599, 801
MspR9I CCNGG 6 cut(s) 380, 599, 600, 758, 801, 828
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 3 cut(s) 380, 758, 828
MwoI GCNNNNNNNGC 2 cut(s) 199, 791
NciI CCSGG 3 cut(s) 599, 600, 801
NdeII GATC 4 cut(s) 97, 171, 693, 925
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 1 cut(s) 279
NlaIV GGNNCC 4 cut(s) 80, 762, 763, 774
NmuCI GTSAC 1 cut(s) 727
PasI CCCWGGG 1 cut(s) 379
PkrI GCNGC 3 cut(s) 73, 424, 787
PpuMI RGGWCCY 1 cut(s) 761
Psp124BI GAGCTC 2 cut(s) 533, 554
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 3 cut(s) 378, 756, 826
PspEI GGTNACC 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 3 cut(s) 378, 756, 826
PspN4I GGNNCC 4 cut(s) 80, 762, 763, 774
PspPI GGNCC 3 cut(s) 137, 638, 761
PspPPI RGGWCCY 1 cut(s) 761
RsaI GTAC 2 cut(s) 511, 905
RsaNI GTAC 2 cut(s) 510, 904
SacI GAGCTC 2 cut(s) 533, 554
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 3 cut(s) 72, 423, 786
Sau3AI GATC 4 cut(s) 97, 171, 693, 925
Sau96I GGNCC 3 cut(s) 137, 638, 761
ScaI AGTACT 1 cut(s) 905
ScrFI CCNGG 6 cut(s) 380, 599, 600, 758, 801, 828
SduI GDGCHC 2 cut(s) 533, 554
SfaNI GCATC 1 cut(s) 844
SinI GGWCC 2 cut(s) 638, 761
SmaI CCCGGG 1 cut(s) 600
Sse9I AATT 5 cut(s) 166, 185, 207, 480, 630
SsiI CCGC 1 cut(s) 719
SspMI CTAG 3 cut(s) 75, 704, 870
SstI GAGCTC 2 cut(s) 533, 554
StyD4I CCNGG 6 cut(s) 378, 597, 598, 756, 799, 826
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 4 cut(s) 417, 689, 727, 952
TaqI TCGA 2 cut(s) 363, 947
TasI AATT 5 cut(s) 166, 185, 207, 480, 630
TatI WGTACW 1 cut(s) 903
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 2 cut(s) 154, 732
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 3 cut(s) 71, 422, 785
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 1 cut(s) 651
TspMI CCCGGG 1 cut(s) 598
TspRI CASTG 2 cut(s) 154, 732
VpaK11BI GGWCC 2 cut(s) 638, 761
XapI RAATTY 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 2 cut(s) 131, 673
XmaI CCCGGG 1 cut(s) 598
XspI CTAG 3 cut(s) 75, 704, 870
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.