Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

42721778 .. 42723023

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G520800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCTGCTTTTCTGAAATTACTGCTTTTGATCTCTCTGTTCCATTTTGGCTCGGCAGCTCGGAGCCTTTCTGAGACTTCTTCTGACCAAACCCAGCAACCCTCTTTGCAATTTCAGTACCACAATGGTCCTCTCCTCTCTGGCAAATTCTCCATCAACTTGATCTGGTACGGCAACTTCAAACCCTCCCAGCGTGCAATCGTCTCTGATTTCATCACCTCCCTTGCTTCTCCTCCCCAATCCAAACCCGCCTCAGGCCAACCATCTGTTGCCACGTGGTTGAAGTCCATAGAGAAATACTACCACCTCTTGAGTTCCAAGAAACAATATTCTCTCTCCCTCTCTTTGGGCACCCAAACCTTGGATGACAAGTACTCTCTGGGAAAATCCCTCACTGCTCGTCAAATCCAGCAATTGGCCTCAAAGGGTGCCCAGAATTATGCAATCAACGTTGTTTTGACCTCATCCGATGTTTTGGTTGATGGGTTTTGCATGAGCAAATGTGGAAGCCATAGCTCTTCCTCTAGCTCCAGCCACATTAGGGGCAAAACCCAGAAGTTTACTTACATTTGGGTGGGAAACTCCGAGACCCAATGCCCTGGCCAATGTGCCTGGCCATTCCACCAGCCCATCTATGGGCCCCAGGGCCCTCCGCTGGTGGCCCCCAACAATGATGTGGGCCTAGACGGCATGGTCATCAACCTGGCTAGCCTTTTGGCTGGGACTGTGACCAATCCATTTGGAAATGGCTACTACCAAGGTCCCAAAGAGGCTCCATTGGAGGCTGCTTCTGCTTGCACTGGGGTTTATGGGAAAGGCGCTTATCCCGGCTATGCTGGAAACCTCTTGGTGGACCCCACAACCGGTGCTAGCTACAATGCTCATGGTTCTAATGGGAAGAAGTTCTTGCTTCCTGCTCTGTTTGACCCTTCAACCTCAACTTGTTCTACTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

320

Amino Acids

34.04

Weight (kDa)

9.0

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AccB1I	GGYRCC	2 cut(s)	350, 428
AccB7I	CCANNNNNTGG	2 cut(s)	361, 415
AciI	CCGC	2 cut(s)	249, 653
AclI	AACGTT	1 cut(s)	450
AcoI	YGGCCR	2 cut(s)	601, 614
AcsI	RAATTY	1 cut(s)	146
AcvI	CACGTG	1 cut(s)	276
AfaI	GTAC	3 cut(s)	119, 170, 374
AgeI	ACCGGT	1 cut(s)	863
AgsI	TTSAA	3 cut(s)	181, 283, 933
AjnI	CCWGG	4 cut(s)	598, 611, 642, 702
AluBI	AGCT	4 cut(s)	59, 516, 528, 873
AluI	AGCT	4 cut(s)	59, 516, 528, 873
Alw26I	GTCTC	3 cut(s)	68, 208, 581
AoxI	GGCC	8 cut(s)	256, 417, 601, 614, 638, 646, 660, 679
ApaI	GGGCCC	2 cut(s)	642, 650
ApeKI	GCWGC	2 cut(s)	56, 785
ApoI	RAATTY	1 cut(s)	146
AsiGI	ACCGGT	1 cut(s)	863
Asp700I	GAANNNNTTC	1 cut(s)	902
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	9 cut(s)	128, 638, 639, 646, 647, 661, 679, 761, 853
AsuC2I	CCSGG	1 cut(s)	828
AsuHPI	GGTGA	1 cut(s)	208
AsuNHI	GCTAGC	2 cut(s)	707, 869
AvaII	GGWCC	3 cut(s)	128, 761, 853
AxyI	CCTNAGG	1 cut(s)	253
BaeGI	GKGCMC	4 cut(s)	353, 433, 642, 650
BalI	TGGCCA	2 cut(s)	603, 616
BanI	GGYRCC	2 cut(s)	350, 428
BanII	GRGCYC	2 cut(s)	642, 650
BarI	GAAGNNNNNNTAC	4 cut(s)	161, 193, 548, 580
BbrPI	CACGTG	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	68, 772
BccI	CCATC	4 cut(s)	161, 271, 476, 638
BceAI	ACGGC	2 cut(s)	187, 703
BciT130I	CCWGG	4 cut(s)	600, 613, 644, 704
BcnI	CCSGG	1 cut(s)	828
BcoDI	GTCTC	3 cut(s)	68, 208, 581
BfaI	CTAG	4 cut(s)	525, 683, 708, 870
BfoI	RGCGCY	1 cut(s)	822
BglI	GCCNNNNNGGC	1 cut(s)	687
BisI	GCNGC	2 cut(s)	57, 786
BlsI	GCNGC	2 cut(s)	58, 787
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	5 cut(s)	600, 613, 644, 704, 828
Bme18I	GGWCC	3 cut(s)	128, 761, 853
BmgT120I	GGNCC	9 cut(s)	128, 638, 639, 646, 647, 661, 679, 761, 853
BmrFI	CCNGG	5 cut(s)	600, 613, 644, 704, 828
BmrI	ACTGGG	1 cut(s)	810
BmtI	GCTAGC	2 cut(s)	711, 873
BmuI	ACTGGG	1 cut(s)	810
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	5 cut(s)	360, 598, 642, 643, 757
BsaWI	WCCGGW	1 cut(s)	863
Bse118I	RCCGGY	1 cut(s)	863
Bse1I	ACTGG	1 cut(s)	805
Bse21I	CCTNAGG	1 cut(s)	253
BseBI	CCWGG	4 cut(s)	600, 613, 644, 704
BseDI	CCNNGG	5 cut(s)	360, 598, 642, 643, 757
BseGI	GGATG	2 cut(s)	370, 464
BseMII	CTCAG	2 cut(s)	63, 267
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	2 cut(s)	125, 222
BseSI	GKGCMC	4 cut(s)	353, 433, 642, 650
BseXI	GCAGC	2 cut(s)	68, 772
BseYI	CCCAGC	3 cut(s)	93, 189, 719
BshFI	GGCC	8 cut(s)	258, 419, 603, 616, 640, 648, 662, 681
BshNI	GGYRCC	2 cut(s)	350, 428
BshTI	ACCGGT	1 cut(s)	863
BsiSI	CCGG	2 cut(s)	828, 864
BslFI	GGGAC	2 cut(s)	736, 747
BsmAI	GTCTC	3 cut(s)	68, 208, 581
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	736, 747
BsnI	GGCC	8 cut(s)	258, 419, 603, 616, 640, 648, 662, 681
Bso31I	GGTCTC	1 cut(s)	581
Bsp120I	GGGCCC	2 cut(s)	638, 646
Bsp1286I	GDGCHC	4 cut(s)	353, 433, 642, 650
Bsp143I	GATC	2 cut(s)	30, 162
BspACI	CCGC	2 cut(s)	249, 653
BspANI	GGCC	8 cut(s)	258, 419, 603, 616, 640, 648, 662, 681
BspCNI	CTCAG	2 cut(s)	64, 266
BspOI	GCTAGC	2 cut(s)	711, 873
BspQI	GCTCTTC	1 cut(s)	523
BspT107I	GGYRCC	2 cut(s)	350, 428
BspTNI	GGTCTC	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	863
BsrI	ACTGG	1 cut(s)	805
BssAI	RCCGGY	1 cut(s)	863
BssECI	CCNNGG	5 cut(s)	360, 598, 642, 643, 757
BssMI	GATC	2 cut(s)	30, 162
BssT1I	CCWWGG	2 cut(s)	360, 757
Bst2UI	CCWGG	4 cut(s)	600, 613, 644, 704
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	1 cut(s)	523
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	4 cut(s)	195, 709, 796, 871
BstDEI	CTNAG	2 cut(s)	72, 253
BstF5I	GGATG	2 cut(s)	370, 464
BstH2I	RGCGCY	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	2 cut(s)	33, 165
BstMAI	GTCTC	3 cut(s)	68, 208, 581
BstMBI	GATC	2 cut(s)	30, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	687, 791
BstNI	CCWGG	4 cut(s)	600, 613, 644, 704
BstSCI	CCNGG	5 cut(s)	598, 611, 642, 702, 826
BstSLI	GKGCMC	4 cut(s)	353, 433, 642, 650
BstV1I	GCAGC	2 cut(s)	68, 772
BstXI	CCANNNNNNTGG	1 cut(s)	599
Bsu36I	CCTNAGG	1 cut(s)	253
BsuRI	GGCC	8 cut(s)	258, 419, 603, 616, 640, 648, 662, 681
BtsCI	GGATG	2 cut(s)	370, 464
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 798
Cac8I	GCNNGC	4 cut(s)	195, 709, 796, 871
CfoI	GCGC	1 cut(s)	821
Cfr10I	RCCGGY	1 cut(s)	863
Cfr13I	GGNCC	9 cut(s)	128, 638, 639, 646, 647, 661, 679, 761, 853
Csp6I	GTAC	3 cut(s)	118, 169, 373
CspAI	ACCGGT	1 cut(s)	863
CviAII	CATG	3 cut(s)	493, 691, 884
CviQI	GTAC	3 cut(s)	118, 169, 373
DdeI	CTNAG	2 cut(s)	72, 253
DpnI	GATC	2 cut(s)	32, 164
DpnII	GATC	2 cut(s)	30, 162
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	2 cut(s)	601, 614
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	360, 757
Eco24I	GRGCYC	2 cut(s)	642, 650
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	3 cut(s)	128, 761, 853
Eco72I	CACGTG	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	4 cut(s)	639, 646, 647, 761
EcoRII	CCWGG	4 cut(s)	598, 611, 642, 702
EcoT14I	CCWWGG	2 cut(s)	360, 757
EcoT38I	GRGCYC	2 cut(s)	642, 650
ErhI	CCWWGG	2 cut(s)	360, 757
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	3 cut(s)	496, 694, 887
FaiI	YATR	9 cut(s)	290, 441, 494, 513, 636, 692, 810, 834, 885
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FaqI	GGGAC	2 cut(s)	736, 747
FatI	CATG	3 cut(s)	492, 690, 883
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	57, 786
FokI	GGATG	2 cut(s)	377, 451
FriOI	GRGCYC	2 cut(s)	642, 650
Fsp4HI	GCNGC	2 cut(s)	57, 786
FspBI	CTAG	4 cut(s)	525, 683, 708, 870
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	2 cut(s)	57, 786
GsaI	CCCAGC	3 cut(s)	97, 193, 723
GsuI	CTGGAG	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	822
HaeIII	GGCC	8 cut(s)	258, 419, 603, 616, 640, 648, 662, 681
HapII	CCGG	2 cut(s)	828, 864
HhaI	GCGC	1 cut(s)	821
Hin1II	CATG	3 cut(s)	496, 694, 887
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HpaII	CCGG	2 cut(s)	828, 864
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	561, 853
Hpy188I	TCNGA	7 cut(s)	15, 63, 73, 85, 208, 469, 586
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	2 cut(s)	561, 853
HpyAV	CCTTC	1 cut(s)	939
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4IV	ACGT	2 cut(s)	275, 450
HpyCH4V	TGCA	5 cut(s)	109, 197, 443, 492, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	687, 791
HpyF3I	CTNAG	2 cut(s)	72, 253
HpySE526I	ACGT	2 cut(s)	275, 450
Hsp92II	CATG	3 cut(s)	496, 694, 887
HspAI	GCGC	1 cut(s)	819
Kzo9I	GATC	2 cut(s)	30, 162
LguI	GCTCTTC	1 cut(s)	523
LmnI	GCTCC	3 cut(s)	63, 533, 778
Lsp1109I	GCAGC	2 cut(s)	68, 772
MaeI	CTAG	4 cut(s)	525, 683, 708, 870
MaeII	ACGT	2 cut(s)	275, 450
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	2 cut(s)	32, 164
MboI	GATC	2 cut(s)	30, 162
MboII	GAAGA	3 cut(s)	72, 510, 910
MfeI	CAATTG	1 cut(s)	413
MhlI	GDGCHC	4 cut(s)	353, 433, 642, 650
MlsI	TGGCCA	2 cut(s)	603, 616
MluCI	AATT	5 cut(s)	17, 110, 146, 413, 436
MluNI	TGGCCA	2 cut(s)	603, 616
Mox20I	TGGCCA	2 cut(s)	603, 616
MroXI	GAANNNNTTC	1 cut(s)	902
MscI	TGGCCA	2 cut(s)	603, 616
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	2 cut(s)	603, 616
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	2 cut(s)	828, 864
MspR9I	CCNGG	5 cut(s)	600, 613, 644, 704, 828
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	4 cut(s)	600, 613, 644, 704
MwoI	GCNNNNNNNGC	2 cut(s)	687, 791
NciI	CCSGG	1 cut(s)	828
NdeII	GATC	2 cut(s)	30, 162
NheI	GCTAGC	2 cut(s)	707, 869
NlaIII	CATG	3 cut(s)	496, 694, 887
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	727
PasI	CCCWGGG	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	902
PflMI	CCANNNNNTGG	2 cut(s)	361, 415
PinAI	ACCGGT	1 cut(s)	863
PkrI	GCNGC	2 cut(s)	58, 787
PmaCI	CACGTG	1 cut(s)	276
PmlI	CACGTG	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	761
Psp1406I	AACGTT	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	4 cut(s)	598, 611, 642, 702
PspCI	CACGTG	1 cut(s)	276
PspFI	CCCAGC	3 cut(s)	93, 189, 719
PspGI	CCWGG	4 cut(s)	598, 611, 642, 702
PspOMI	GGGCCC	2 cut(s)	638, 646
PspPI	GGNCC	9 cut(s)	128, 638, 639, 646, 647, 661, 679, 761, 853
PspPPI	RGGWCCY	1 cut(s)	761
RsaI	GTAC	3 cut(s)	119, 170, 374
RsaNI	GTAC	3 cut(s)	118, 169, 373
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	523
SatI	GCNGC	2 cut(s)	57, 786
Sau3AI	GATC	2 cut(s)	30, 162
Sau96I	GGNCC	9 cut(s)	128, 638, 639, 646, 647, 661, 679, 761, 853
ScaI	AGTACT	1 cut(s)	374
ScrFI	CCNGG	5 cut(s)	600, 613, 644, 704, 828
SduI	GDGCHC	4 cut(s)	353, 433, 642, 650
SinI	GGWCC	3 cut(s)	128, 761, 853
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	5 cut(s)	17, 110, 146, 413, 436
SsiI	CCGC	2 cut(s)	249, 653
SspI	AATATT	1 cut(s)	329
SspMI	CTAG	4 cut(s)	525, 683, 708, 870
StyD4I	CCNGG	5 cut(s)	598, 611, 642, 702, 826
StyI	CCWWGG	2 cut(s)	360, 757
TaaI	ACNGT	1 cut(s)	727
TaiI	ACGT	2 cut(s)	278, 453
TasI	AATT	5 cut(s)	17, 110, 146, 413, 436
TatI	WGTACW	1 cut(s)	372
TscAI	CASTG	2 cut(s)	400, 805
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	56, 785
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	400, 805
Van91I	CCANNNNNTGG	2 cut(s)	361, 415
VpaK11BI	GGWCC	3 cut(s)	128, 761, 853
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	2 cut(s)	632, 673
XmnI	GAANNNNTTC	1 cut(s)	902
XspI	CTAG	4 cut(s)	525, 683, 708, 870
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.