Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

51956688 .. 51959154

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG445800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGATCATAAACCTGGCTAGCCTTTTGGCTGGGACTGTGACCAACCCTTTTGGGAATGGGTTCTATCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCTGGTGTCTATGGGAAAGGGGCACATCCTGGTTATGCTGGAGACCTATTGGTTGATGCGACAACTGGTGCTAGCTACAATGCCAATGGTTTTAATGGGAAGAAGAAGGCAATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

75

Amino Acids

7.58

Weight (kDa)

7.87

Isoelectric Point (pI)

4.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	1 - 71	6.8e-32	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	3 cut(s)	12, 109, 136
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	71
AsuNHI	GCTAGC	2 cut(s)	17, 179
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	82
BciT130I	CCWGG	3 cut(s)	14, 111, 138
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	18, 180
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	3 cut(s)	14, 111, 138
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	3 cut(s)	72, 73, 84
BmrFI	CCNGG	3 cut(s)	14, 111, 138
BmsI	GCATC	1 cut(s)	154
BmtI	GCTAGC	2 cut(s)	21, 183
BpmI	CTGGAG	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	3 cut(s)	14, 111, 138
BseGI	GGATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	178
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	46, 57
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	46, 57
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	3
BspLI	GGNNCC	3 cut(s)	72, 73, 84
BspOI	GCTAGC	2 cut(s)	21, 183
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	3 cut(s)	14, 111, 138
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	19, 181
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	3 cut(s)	14, 111, 138
BstSCI	CCNGG	3 cut(s)	12, 109, 136
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	19, 181
Cfr13I	GGNCC	1 cut(s)	71
CviJI	RGCY	7 cut(s)	17, 21, 29, 83, 95, 104, 183
CviKI_1	RGCY	7 cut(s)	17, 21, 29, 83, 95, 104, 183
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	12, 109, 136
FaiI	YATR	3 cut(s)	8, 120, 144
FaqI	GGGAC	2 cut(s)	46, 57
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	18, 180
GluI	GCNGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
KflI	GGGWCCC	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	9 cut(s)	15, 26, 53, 96, 123, 123, 132, 150, 159
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	18, 180
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	220, 223
MhlI	GDGCHC	1 cut(s)	133
MnlI	CCTC	2 cut(s)	73, 85
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	201
MspR9I	CCNGG	3 cut(s)	14, 111, 138
MvaI	CCWGG	3 cut(s)	14, 111, 138
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	3
NheI	GCTAGC	2 cut(s)	17, 179
NlaIV	GGNNCC	3 cut(s)	72, 73, 84
NmuCI	GTSAC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	3 cut(s)	12, 109, 136
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	3 cut(s)	12, 109, 136
PspN4I	GGNNCC	3 cut(s)	72, 73, 84
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	14, 111, 138
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	3 cut(s)	15, 156, 185
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	18, 180
StyD4I	CCNGG	3 cut(s)	12, 109, 136
TaaI	ACNGT	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	2 cut(s)	18, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.