Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

32871437 .. 32872132

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0320100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCTTAAGCAGTCTCTTAATCTCAATGCTGATGTTTTTGCTAAACTGCTCATGATTATATGGGGTTTATCGAAAAGTCGAAATAACAAATTGTGGGAAGGCAAAGTGCAGTCAGCAAATGACATTCTGCTGGGATGCTTTACATGGCTTGAAGAATTTCACAAAGCTAGAATGAGTACTACTTTAGCAGCCCCAAAAACTACTAAGAAATGGCAGGCTGCTGCAACTCCTAAGCTAAATGTTGATGGAGCATTTATCCTGCAAGAATCATATGGTGGAACTGGAGGAGTTTTAAGATACTCAAATGGAGCCTTTCAAGCTGCTTTCTCAAAGCCGGTGTTTCATGTAAACTCAGCACAACAAGTTGAACTGTTGGCCATTAAAGAAGGGTTGCAGTTCATCAAGAATCTGCAGATTCAGAATGTCATAGTTGAAACAGATTGTCTAGTGGCAGTTCAAGATATCACAGGTACTGCATTGAATCTCTCAATAACGAGCATCATTGTGCTTGATATTCAACAGGAATTGTGTGCCTTGCCGGGTGTATTGATCAAATTTGCACCCAGGTCTTGTAATAGGGTTGCACATAAACTTGCTAATCTTGCTTTTGAAAGTTTACGACAACCAACTTGGCAGGGAGTTCCTCCACCCTGTATTGTTGACCTTGTTTCACAAGATTGTAATCCTAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

231

Amino Acids

25.35

Weight (kDa)

8.68

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	80 - 202	3e-24	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	155, 554
AfaI	GTAC	2 cut(s)	178, 472
AflII	CTTAAG	1 cut(s)	5
AgsI	TTSAA	8 cut(s)	152, 317, 368, 434, 458, 481, 518, 611
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	3 cut(s)	167, 235, 320
AluI	AGCT	3 cut(s)	167, 235, 320
Alw26I	GTCTC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	188, 218, 221, 320
ApoI	RAATTY	2 cut(s)	155, 554
Asp700I	GAANNNNTTC	1 cut(s)	156
AsuC2I	CCSGG	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	4 cut(s)	200, 205, 208, 307
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	565
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	168, 446
BfmI	CTRYAG	1 cut(s)	410
BfrI	CTTAAG	1 cut(s)	5
BisI	GCNGC	4 cut(s)	189, 219, 222, 321
BlsI	GCNGC	4 cut(s)	190, 220, 223, 322
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	540, 565
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	540, 565
BmsI	GCATC	2 cut(s)	125, 507
BpmI	CTGGAG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	540
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	563
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	4 cut(s)	200, 205, 208, 307
BseYI	CCCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	335, 539
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	549
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	204, 231, 352
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	552
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 602
BstNI	CCWGG	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	538, 563
BstSFI	CTRYAG	1 cut(s)	410
BstV1I	GCAGC	4 cut(s)	200, 205, 208, 307
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	473
CciI	TCATGA	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	177, 471
CviAII	CATG	3 cut(s)	52, 144, 344
CviJI	RGCY	9 cut(s)	148, 167, 191, 218, 235, 311, 320, 334, 377
CviKI_1	RGCY	9 cut(s)	148, 167, 191, 218, 235, 311, 320, 334, 377
CviQI	GTAC	2 cut(s)	177, 471
DdeI	CTNAG	3 cut(s)	204, 231, 352
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	563
EcoRV	GATATC	1 cut(s)	463
FaeI	CATG	3 cut(s)	55, 147, 347
FaiI	YATR	9 cut(s)	53, 59, 61, 145, 271, 273, 345, 428, 588
FatI	CATG	3 cut(s)	51, 143, 343
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	4 cut(s)	189, 219, 222, 321
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	4 cut(s)	189, 219, 222, 321
FspBI	CTAG	2 cut(s)	168, 446
GluI	GCNGC	4 cut(s)	189, 219, 222, 321
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	335, 539
Hin1II	CATG	3 cut(s)	55, 147, 347
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	4 cut(s)	266, 406, 415, 481
HpaII	CCGG	2 cut(s)	335, 539
Hpy166II	GTNNAC	3 cut(s)	349, 617, 661
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	3 cut(s)	52, 403, 458
Hpy8I	GTNNAC	3 cut(s)	349, 617, 661
HpyAV	CCTTC	2 cut(s)	92, 380
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4V	TGCA	8 cut(s)	109, 224, 262, 394, 412, 476, 560, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 602
HpyF3I	CTNAG	3 cut(s)	204, 231, 352
Hsp92II	CATG	3 cut(s)	55, 147, 347
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	248, 308
Lsp1109I	GCAGC	4 cut(s)	200, 205, 208, 307
LweI	GCATC	2 cut(s)	125, 507
MaeI	CTAG	2 cut(s)	168, 446
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	5 cut(s)	89, 155, 524, 554, 688
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	2 cut(s)	278, 654
Mox20I	TGGCCA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	5 cut(s)	6, 18, 293, 381, 694
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	2 cut(s)	335, 539
MspR9I	CCNGG	2 cut(s)	540, 565
MvaI	CCWGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	317, 602
NciI	CCSGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	1 cut(s)	549
NlaIII	CATG	3 cut(s)	55, 147, 347
NlaIV	GGNNCC	1 cut(s)	310
PagI	TCATGA	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	4 cut(s)	266, 406, 415, 481
PkrI	GCNGC	4 cut(s)	190, 220, 223, 322
Psp6I	CCWGG	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	473
RsaI	GTAC	2 cut(s)	178, 472
RsaNI	GTAC	2 cut(s)	177, 471
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	5 cut(s)	6, 18, 293, 381, 694
SatI	GCNGC	4 cut(s)	189, 219, 222, 321
Sau3AI	GATC	1 cut(s)	549
ScaI	AGTACT	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	540, 565
SetI	ASST	6 cut(s)	169, 237, 322, 472, 569, 666
SfaNI	GCATC	2 cut(s)	125, 507
SfcI	CTRYAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	5 cut(s)	89, 155, 524, 554, 688
SspMI	CTAG	2 cut(s)	168, 446
StyD4I	CCNGG	2 cut(s)	538, 563
TaaI	ACNGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	71, 79
TasI	AATT	5 cut(s)	89, 155, 524, 554, 688
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	4 cut(s)	266, 406, 415, 481
Tru1I	TTAA	5 cut(s)	6, 18, 293, 381, 694
Tru9I	TTAA	5 cut(s)	6, 18, 293, 381, 694
TseI	GCWGC	4 cut(s)	188, 218, 221, 320
TspDTI	ATGAA	2 cut(s)	332, 388
Vha464I	CTTAAG	1 cut(s)	5
XapI	RAATTY	2 cut(s)	155, 554
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	168, 446
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.