Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

27034783 .. 27035766

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTCTTCCTCTTCTTGTTTGATACTATCACTCTTCTTAGTGGTCTCTTTCTTCCAAGTTTCACTTGCTTCTTCTAGGTTGTTCCAAGTCTCCTTGGCAACAAGGAAGCTCAGTCAGCTTGTTCAAGACCAGACCCAGCTCTTGAAATACCACAACGGTCCTCTTCTCAACGGCAAAATCGCCATCAATCTCATCTGGTACGGCAACTTCAAGCCGGCACAGAAAGCCATTGTTTCCGATTTCATCACCTCCTTATCTTCATCTTCCTCGCCGGCCCAGGCCAAACAGCCCTCCGTCGCTACCTGGTGGAAAACCACCGAGAAGTACTACCACCTCACCTCCAAGAAGTCCTCTCTTTCCATTGCTCTTGGGAACCAGATTTCCAATGAGAAATATTCTCTTGGAAAGTCTCTGACCAACAAACAGATCATTAAGTTGGCTTCAATGGGTGACCAGAAGAACGCAATCAATGTCGTCTTGACTTCAGCCGATGTCGTCGTCGATGGGTTCTGTATGAACCGGTGCGGTACCCATGGCTCTGCTTCCGGCTCATCTCACATCCGAGGCAAGAACTACAAGTTCGCTTACATTTGGGTCGGAAACTCCGAGACTCAATGCCCTGGTCTCTGTGCCTGGCCGTTCCACCAGCCCATCTACGGCCCACAGAGCCCACCCCTCGTCGCTCCCAACAACGACGTTGGCCTTGACGGCATGGTGATCAACTTGGCGAGCCTCTTGGCCGGAACAGCAACCAACCCTTTTGGAAATGGTTACTTCCAGGGTCCCGCTGAGGCTCCATTGGAGGCTGCTTCAGCTTGTCCCGGGGTTTATGCCAAAGGGGCTTATCCGGGTTACGCCGGAGACCTTTTGGTGGATGCTACAACTGGCGCAAGCTACAATGCCAATGGTGCTAATGGAAGGAAGTACTTGGTTCCTGCTCTGTTTGATCCATCTACCTCAAGCTGTTCCACTTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0012505 GO:0014070 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

328

Amino Acids

34.73

Weight (kDa)

9.14

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	49 - 326	3.2e-127	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	530
AciI	CCGC	2 cut(s)	528, 789
AclWI	GGATC	1 cut(s)	944
AcoI	YGGCCR	2 cut(s)	638, 741
AcuI	CTGAAG	2 cut(s)	471, 798
AfaI	GTAC	4 cut(s)	203, 329, 532, 929
AfiI	CCNNNNNNNGG	2 cut(s)	659, 874
AgeI	ACCGGT	1 cut(s)	522
AgsI	TTSAA	4 cut(s)	128, 148, 214, 447
AjnI	CCWGG	5 cut(s)	279, 305, 622, 635, 780
AloI	GAACNNNNNNTCC	2 cut(s)	368, 400
AluBI	AGCT	6 cut(s)	112, 121, 142, 818, 897, 966
AluI	AGCT	6 cut(s)	112, 121, 142, 818, 897, 966
Alw26I	GTCTC	6 cut(s)	52, 97, 417, 605, 632, 858
AlwI	GGATC	1 cut(s)	944
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	6 cut(s)	276, 282, 638, 661, 703, 741
ApeKI	GCWGC	1 cut(s)	809
AsiGI	ACCGGT	1 cut(s)	522
Asp718I	GGTACC	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	893
AspS9I	GGNCC	4 cut(s)	161, 277, 662, 785
AsuC2I	CCSGG	3 cut(s)	825, 826, 852
AsuHPI	GGTGA	4 cut(s)	241, 331, 464, 730
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	2 cut(s)	161, 785
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	4 cut(s)	194, 500, 662, 961
BceAI	ACGGC	5 cut(s)	190, 220, 625, 676, 727
BciT130I	CCWGG	5 cut(s)	281, 307, 624, 637, 782
BclI	TGATCA	1 cut(s)	720
BcnI	CCSGG	3 cut(s)	825, 826, 852
BcoDI	GTCTC	6 cut(s)	52, 97, 417, 605, 632, 858
BfaI	CTAG	2 cut(s)	78, 982
BglI	GCCNNNNNGGC	2 cut(s)	711, 842
BisI	GCNGC	1 cut(s)	810
BlsI	GCNGC	1 cut(s)	811
BmcAI	AGTACT	2 cut(s)	329, 929
Bme1390I	CCNGG	8 cut(s)	281, 307, 624, 637, 782, 825, 826, 852
Bme18I	GGWCC	2 cut(s)	161, 785
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	4 cut(s)	161, 277, 662, 785
BmiI	GGNNCC	6 cut(s)	377, 532, 786, 787, 798, 936
BmrFI	CCNGG	8 cut(s)	281, 307, 624, 637, 782, 825, 826, 852
BmsI	GCATC	1 cut(s)	868
Bpu10I	CCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	946
BpuMI	CCSGG	3 cut(s)	825, 826, 852
BsaI	GGTCTC	3 cut(s)	52, 632, 858
BsaJI	CCNNGG	8 cut(s)	96, 279, 535, 565, 622, 781, 824, 825
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 874
Bse118I	RCCGGY	3 cut(s)	217, 274, 522
Bse1I	ACTGG	1 cut(s)	892
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	5 cut(s)	281, 307, 624, 637, 782
BseDI	CCNNGG	8 cut(s)	96, 279, 535, 565, 622, 781, 824, 825
BseGI	GGATG	2 cut(s)	561, 883
BseLI	CCNNNNNNNGG	2 cut(s)	659, 874
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	127, 783
BseNI	ACTGG	1 cut(s)	892
BseXI	GCAGC	1 cut(s)	796
BseYI	CCCAGC	1 cut(s)	138
BshFI	GGCC	6 cut(s)	278, 284, 640, 663, 705, 743
BshNI	GGYRCC	1 cut(s)	530
BshTI	ACCGGT	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	8 cut(s)	218, 275, 523, 549, 744, 825, 851, 861
BslFI	GGGAC	2 cut(s)	771, 807
BslI	CCNNNNNNNGG	2 cut(s)	659, 874
BsmAI	GTCTC	6 cut(s)	52, 97, 417, 605, 632, 858
BsmFI	GGGAC	2 cut(s)	771, 807
BsnI	GGCC	6 cut(s)	278, 284, 640, 663, 705, 743
Bso31I	GGTCTC	3 cut(s)	52, 632, 858
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	3 cut(s)	429, 720, 949
Bsp19I	CCATGG	1 cut(s)	535
BspACI	CCGC	2 cut(s)	528, 789
BspANI	GGCC	6 cut(s)	278, 284, 640, 663, 705, 743
BspCNI	CTCAG	2 cut(s)	126, 784
BspLI	GGNNCC	6 cut(s)	377, 532, 786, 787, 798, 936
BspPI	GGATC	1 cut(s)	944
BspT107I	GGYRCC	1 cut(s)	530
BspTNI	GGTCTC	3 cut(s)	52, 632, 858
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	3 cut(s)	217, 274, 522
BsrI	ACTGG	1 cut(s)	892
BssAI	RCCGGY	3 cut(s)	217, 274, 522
BssECI	CCNNGG	8 cut(s)	96, 279, 535, 565, 622, 781, 824, 825
BssMI	GATC	3 cut(s)	429, 720, 949
BssT1I	CCWWGG	2 cut(s)	96, 535
Bst2UI	CCWGG	5 cut(s)	281, 307, 624, 637, 782
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	3 cut(s)	19, 41, 171
BstC8I	GCNNGC	4 cut(s)	219, 276, 733, 895
BstDEI	CTNAG	3 cut(s)	40, 113, 792
BstDSI	CCRYGG	1 cut(s)	535
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	561, 883
BstHHI	GCGC	1 cut(s)	893
BstKTI	GATC	3 cut(s)	432, 723, 952
BstMAI	GTCTC	6 cut(s)	52, 97, 417, 605, 632, 858
BstMBI	GATC	3 cut(s)	429, 720, 949
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 227, 669, 711, 749, 815, 842, 911
BstNI	CCWGG	5 cut(s)	281, 307, 624, 637, 782
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	8 cut(s)	279, 305, 622, 635, 780, 823, 824, 850
BstV1I	GCAGC	1 cut(s)	796
BsuRI	GGCC	6 cut(s)	278, 284, 640, 663, 705, 743
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	561, 883
Cac8I	GCNNGC	4 cut(s)	219, 276, 733, 895
CfoI	GCGC	1 cut(s)	893
Cfr10I	RCCGGY	3 cut(s)	217, 274, 522
Cfr13I	GGNCC	4 cut(s)	161, 277, 662, 785
Cfr9I	CCCGGG	1 cut(s)	824
CsiI	ACCWGGT	1 cut(s)	305
Csp6I	GTAC	4 cut(s)	202, 328, 531, 928
CspAI	ACCGGT	1 cut(s)	522
CviAII	CATG	2 cut(s)	536, 715
CviQI	GTAC	4 cut(s)	202, 328, 531, 928
DdeI	CTNAG	3 cut(s)	40, 113, 792
DpnI	GATC	3 cut(s)	431, 722, 951
DpnII	GATC	3 cut(s)	429, 720, 949
EaeI	YGGCCR	2 cut(s)	638, 741
Eam1104I	CTCTTC	3 cut(s)	19, 41, 171
EarI	CTCTTC	3 cut(s)	19, 41, 171
Eco130I	CCWWGG	2 cut(s)	96, 535
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	3 cut(s)	52, 632, 858
Eco47I	GGWCC	2 cut(s)	161, 785
Eco57I	CTGAAG	2 cut(s)	471, 798
Eco88I	CYCGRG	1 cut(s)	824
Eco91I	GGTNACC	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	785
EcoO65I	GGTNACC	1 cut(s)	452
EcoRII	CCWGG	5 cut(s)	279, 305, 622, 635, 780
EcoT14I	CCWWGG	2 cut(s)	96, 535
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	2 cut(s)	96, 535
FaeI	CATG	2 cut(s)	539, 718
FaiI	YATR	4 cut(s)	518, 537, 716, 834
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	771, 807
FatI	CATG	2 cut(s)	535, 714
FauI	CCCGC	1 cut(s)	796
FbaI	TGATCA	1 cut(s)	720
Fnu4HI	GCNGC	1 cut(s)	810
FokI	GGATG	2 cut(s)	548, 890
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	1 cut(s)	810
FspBI	CTAG	2 cut(s)	78, 982
GlaI	GCGC	1 cut(s)	892
GluI	GCNGC	1 cut(s)	810
GsaI	CCCAGC	1 cut(s)	142
HaeIII	GGCC	6 cut(s)	278, 284, 640, 663, 705, 743
HapII	CCGG	8 cut(s)	218, 275, 523, 549, 744, 825, 851, 861
HhaI	GCGC	1 cut(s)	893
Hin1II	CATG	2 cut(s)	539, 718
Hin6I	GCGC	1 cut(s)	891
HinP1I	GCGC	1 cut(s)	891
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	8 cut(s)	218, 275, 523, 549, 744, 825, 851, 861
HphI	GGTGA	4 cut(s)	241, 331, 464, 730
Hpy188I	TCNGA	5 cut(s)	241, 417, 566, 602, 610
Hpy188III	TCNNGA	3 cut(s)	128, 145, 481
Hpy99I	CGWCG	5 cut(s)	302, 503, 506, 686, 701
HpyAV	CCTTC	1 cut(s)	915
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	699
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 227, 669, 711, 749, 815, 842, 911
HpyF3I	CTNAG	3 cut(s)	40, 113, 792
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	2 cut(s)	539, 718
HspAI	GCGC	1 cut(s)	891
KflI	GGGWCCC	1 cut(s)	785
KpnI	GGTACC	1 cut(s)	534
KroI	GCCGGC	2 cut(s)	217, 274
KroNI	GCCGGC	2 cut(s)	219, 276
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	429, 720, 949
LmnI	GCTCC	2 cut(s)	691, 802
Lsp1109I	GCAGC	1 cut(s)	796
LweI	GCATC	1 cut(s)	868
MabI	ACCWGGT	1 cut(s)	305
MaeI	CTAG	2 cut(s)	78, 982
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	3 cut(s)	452, 773, 854
MalI	GATC	3 cut(s)	431, 722, 951
MboI	GATC	3 cut(s)	429, 720, 949
MboII	GAAGA	8 cut(s)	6, 28, 46, 66, 158, 252, 258, 472
MhlI	GDGCHC	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	1 cut(s)	580
MroNI	GCCGGC	2 cut(s)	217, 274
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	8 cut(s)	218, 275, 523, 549, 744, 825, 851, 861
MspR9I	CCNGG	8 cut(s)	281, 307, 624, 637, 782, 825, 826, 852
MvaI	CCWGG	5 cut(s)	281, 307, 624, 637, 782
MwoI	GCNNNNNNNGC	8 cut(s)	118, 227, 669, 711, 749, 815, 842, 911
NaeI	GCCGGC	2 cut(s)	219, 276
NciI	CCSGG	3 cut(s)	825, 826, 852
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	3 cut(s)	429, 720, 949
NgoMIV	GCCGGC	2 cut(s)	217, 274
NlaIII	CATG	2 cut(s)	539, 718
NlaIV	GGNNCC	6 cut(s)	377, 532, 786, 787, 798, 936
NmuCI	GTSAC	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PdiI	GCCGGC	2 cut(s)	219, 276
PinAI	ACCGGT	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	811
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PpuMI	RGGWCCY	1 cut(s)	785
Psp5II	RGGWCCY	1 cut(s)	785
Psp6I	CCWGG	5 cut(s)	279, 305, 622, 635, 780
PspEI	GGTNACC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	5 cut(s)	279, 305, 622, 635, 780
PspN4I	GGNNCC	6 cut(s)	377, 532, 786, 787, 798, 936
PspPI	GGNCC	4 cut(s)	161, 277, 662, 785
PspPPI	RGGWCCY	1 cut(s)	785
RsaI	GTAC	4 cut(s)	203, 329, 532, 929
RsaNI	GTAC	4 cut(s)	202, 328, 531, 928
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	810
Sau3AI	GATC	3 cut(s)	429, 720, 949
Sau96I	GGNCC	4 cut(s)	161, 277, 662, 785
ScaI	AGTACT	2 cut(s)	329, 929
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	8 cut(s)	281, 307, 624, 637, 782, 825, 826, 852
SduI	GDGCHC	1 cut(s)	674
SexAI	ACCWGGT	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	868
SinI	GGWCC	2 cut(s)	161, 785
SmaI	CCCGGG	1 cut(s)	826
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
SsiI	CCGC	2 cut(s)	528, 789
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	2 cut(s)	78, 982
StyD4I	CCNGG	8 cut(s)	279, 305, 622, 635, 780, 823, 824, 850
StyI	CCWWGG	2 cut(s)	96, 535
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	1 cut(s)	504
TatI	WGTACW	2 cut(s)	327, 927
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	809
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	235, 252, 533
TspGWI	ACGGA	1 cut(s)	286
TspMI	CCCGGG	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	161, 785
XmaI	CCCGGG	1 cut(s)	824
XspI	CTAG	2 cut(s)	78, 982
ZrmI	AGTACT	2 cut(s)	329, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.