Rw7G039570

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000422
Physical Location & Seq
Reverse (-)
60948848 .. 60950007
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039570.1

Sequence Viewer

Length: 960 bp
ATGGTTTCTTCTTCTTCCAAACAAGTCTTTTCCTTTGTTCTGCTTCTCTCTCTGTTCCATTTTAGCTCAGCAGCTAGGAGCCTTGCTGAGACCAACTCAGATCAAACCCAACAGCCTATACTATTCCAATACCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGCAAATTCAAGCCTTCCCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTATAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAGAAATACTACCTCTCCAATGCCAAGAAAACCTCATCTGTTTCCCTCTCATTGGGTAACCAGGTCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTGTCTGTTGGAACACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGAGGAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCTAGCAGATGTGGTACACATGGGTCTTCAAAGAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGCCCGGGTCAATGTGCTTGGCCATTCCACCAACCTATGTATGGACCACAGACCACACCTTTGGTGGCACCCAACAACGATGTCGGTGTGGACGGTATGATCATCAATCTAGCTAGTCTTTTGGCTGGGACCGTCACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCGGGTGTCTATGGGAAAGGAGCATATCCTGGTTATGCTGGAGACCTCTTGGTTGATGCTACAACTGGTGCTAGCTACAATGCAAATGGTTTGAGTGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGATCCCTCAACCTCAACTTGTTCTACTCTTGTTTGA

Protein Analysis

319

Amino Acids

33.9

Weight (kDa)

9.02

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 43 - 318 7.2e-125 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 661
AccII CGCG 1 cut(s) 207
AclWI GGATC 1 cut(s) 920
AcoI YGGCCR 2 cut(s) 433, 614
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 2 cut(s) 511, 905
AfiI CCNNNNNNNGG 3 cut(s) 346, 598, 635
AgsI TTSAA 2 cut(s) 193, 525
AjnI CCWGG 3 cut(s) 354, 756, 826
AluBI AGCT 7 cut(s) 66, 74, 372, 531, 552, 707, 873
AluI AGCT 7 cut(s) 66, 74, 372, 531, 552, 707, 873
Alw21I GWGCWC 2 cut(s) 533, 554
Alw26I GTCTC 3 cut(s) 83, 581, 834
AlwI GGATC 1 cut(s) 920
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 3 cut(s) 139, 433, 614
ApeKI GCWGC 3 cut(s) 71, 422, 785
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
AspLEI GCGC 2 cut(s) 207, 209
AspS9I GGNCC 5 cut(s) 140, 358, 638, 723, 761
AsuC2I CCSGG 3 cut(s) 599, 600, 801
AsuHPI GGTGA 2 cut(s) 220, 721
AsuNHI GCTAGC 1 cut(s) 869
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 4 cut(s) 358, 638, 723, 761
BalI TGGCCA 2 cut(s) 435, 616
BanI GGYRCC 1 cut(s) 661
BanII GRGCYC 2 cut(s) 533, 554
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 2 cut(s) 533, 554
BbvI GCAGC 3 cut(s) 83, 434, 772
BccI CCATC 5 cut(s) 173, 259, 274, 455, 479
BciT130I CCWGG 3 cut(s) 356, 758, 828
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 3 cut(s) 599, 600, 801
BcoDI GTCTC 3 cut(s) 83, 581, 834
BfaI CTAG 5 cut(s) 75, 498, 704, 708, 870
BisI GCNGC 3 cut(s) 72, 423, 786
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 73, 424, 787
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 6 cut(s) 356, 599, 600, 758, 801, 828
Bme18I GGWCC 4 cut(s) 358, 638, 723, 761
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 5 cut(s) 140, 358, 638, 723, 761
BmiI GGNNCC 6 cut(s) 80, 663, 724, 762, 763, 774
BmrFI CCNGG 6 cut(s) 356, 599, 600, 758, 801, 828
BmsI GCATC 1 cut(s) 844
BmtI GCTAGC 1 cut(s) 873
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 6 cut(s) 80, 112, 359, 391, 361, 393
BpmI CTGGAG 1 cut(s) 858
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 3 cut(s) 599, 600, 801
BsaI GGTCTC 3 cut(s) 83, 581, 834
BsaJI CCNNGG 3 cut(s) 426, 598, 757
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 293, 323
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 598, 635
Bse1I ACTGG 2 cut(s) 157, 868
BseBI CCWGG 3 cut(s) 356, 758, 828
BseDI CCNNGG 3 cut(s) 426, 598, 757
BseLI CCNNNNNNNGG 3 cut(s) 346, 598, 635
BseMII CTCAG 3 cut(s) 78, 81, 111
BseNI ACTGG 2 cut(s) 157, 868
BsePI GCGCGC 1 cut(s) 205
BseXI GCAGC 3 cut(s) 83, 434, 772
BseYI CCCAGC 2 cut(s) 201, 719
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 141, 435, 616
BshNI GGYRCC 1 cut(s) 661
BsiHKAI GWGCWC 2 cut(s) 533, 554
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 2 cut(s) 599, 800
BslFI GGGAC 3 cut(s) 373, 736, 747
BslI CCNNNNNNNGG 3 cut(s) 346, 598, 635
BsmAI GTCTC 3 cut(s) 83, 581, 834
BsmFI GGGAC 3 cut(s) 373, 736, 747
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 141, 435, 616
Bso31I GGTCTC 3 cut(s) 83, 581, 834
BsoBI CYCGRG 1 cut(s) 598
Bsp1286I GDGCHC 2 cut(s) 533, 554
Bsp143I GATC 4 cut(s) 100, 174, 693, 925
Bsp1720I GCTNAGC 1 cut(s) 67
BspANI GGCC 3 cut(s) 141, 435, 616
BspCNI CTCAG 3 cut(s) 79, 80, 110
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 6 cut(s) 80, 663, 724, 762, 763, 774
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 661
BspTNI GGTCTC 3 cut(s) 83, 581, 834
BsrI ACTGG 2 cut(s) 157, 868
BssECI CCNNGG 3 cut(s) 426, 598, 757
BssHII GCGCGC 1 cut(s) 205
BssMI GATC 4 cut(s) 100, 174, 693, 925
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 3 cut(s) 356, 758, 828
Bst4CI ACNGT 3 cut(s) 417, 689, 727
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 207, 871
BstDEI CTNAG 3 cut(s) 67, 87, 97
BstEII GGTNACC 1 cut(s) 350
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 207, 209
BstKTI GATC 4 cut(s) 103, 177, 696, 928
BstMAI GTCTC 3 cut(s) 83, 581, 834
BstMBI GATC 4 cut(s) 100, 174, 693, 925
BstMWI GCNNNNNNNGC 2 cut(s) 202, 791
BstNI CCWGG 3 cut(s) 356, 758, 828
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 354, 597, 598, 756, 799, 826
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 83, 434, 772
BstV2I GAAGAC 1 cut(s) 513
BstXI CCANNNNNNTGG 1 cut(s) 655
BsuRI GGCC 3 cut(s) 141, 435, 616
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 207, 871
CfoI GCGC 2 cut(s) 207, 209
Cfr13I GGNCC 5 cut(s) 140, 358, 638, 723, 761
Cfr9I CCCGGG 1 cut(s) 598
CsiI ACCWGGT 1 cut(s) 354
Csp6I GTAC 2 cut(s) 510, 904
CviAII CATG 2 cut(s) 279, 515
CviQI GTAC 2 cut(s) 510, 904
DdeI CTNAG 3 cut(s) 67, 87, 97
DpnI GATC 4 cut(s) 102, 176, 695, 927
DpnII GATC 4 cut(s) 100, 174, 693, 925
EaeI YGGCCR 2 cut(s) 433, 614
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Ecl136II GAGCTC 2 cut(s) 531, 552
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 533, 554
Eco31I GGTCTC 3 cut(s) 83, 581, 834
Eco47I GGWCC 4 cut(s) 358, 638, 723, 761
Eco53kI GAGCTC 2 cut(s) 531, 552
Eco88I CYCGRG 1 cut(s) 598
Eco91I GGTNACC 1 cut(s) 350
EcoICRI GAGCTC 2 cut(s) 531, 552
EcoO109I RGGNCCY 2 cut(s) 358, 761
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 3 cut(s) 354, 756, 826
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 533, 554
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 282, 518
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 3 cut(s) 373, 736, 747
FatI CATG 2 cut(s) 278, 514
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 72, 423, 786
FriOI GRGCYC 2 cut(s) 533, 554
Fsp4HI GCNGC 3 cut(s) 72, 423, 786
FspBI CTAG 5 cut(s) 75, 498, 704, 708, 870
GlaI GCGC 2 cut(s) 206, 208
GluI GCNGC 3 cut(s) 72, 423, 786
GsaI CCCAGC 2 cut(s) 205, 723
GsuI CTGGAG 1 cut(s) 858
HaeIII GGCC 3 cut(s) 141, 435, 616
HapII CCGG 2 cut(s) 599, 800
HhaI GCGC 2 cut(s) 207, 209
Hin1II CATG 2 cut(s) 282, 518
Hin6I GCGC 2 cut(s) 205, 207
HinP1I GCGC 2 cut(s) 205, 207
HpaII CCGG 2 cut(s) 599, 800
HphI GGTGA 2 cut(s) 220, 721
Hpy166II GTNNAC 2 cut(s) 512, 685
Hpy188I TCNGA 6 cut(s) 100, 220, 472, 542, 578, 586
Hpy8I GTNNAC 2 cut(s) 512, 685
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 417, 689, 727
HpyCH4V TGCA 1 cut(s) 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 791
HpyF3I CTNAG 3 cut(s) 67, 87, 97
Hsp92II CATG 2 cut(s) 282, 518
HspAI GCGC 2 cut(s) 205, 207
KflI GGGWCCC 1 cut(s) 761
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 4 cut(s) 100, 174, 693, 925
LmnI GCTCC 4 cut(s) 78, 557, 778, 818
Lsp1109I GCAGC 3 cut(s) 83, 434, 772
LweI GCATC 1 cut(s) 844
MabI ACCWGGT 1 cut(s) 354
MaeI CTAG 5 cut(s) 75, 498, 704, 708, 870
MaeIII GTNAC 2 cut(s) 350, 727
MalI GATC 4 cut(s) 102, 176, 695, 927
MboI GATC 4 cut(s) 100, 174, 693, 925
MboII GAAGA 6 cut(s) 3, 6, 137, 237, 513, 910
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 533, 554
MlsI TGGCCA 2 cut(s) 435, 616
MluCI AATT 4 cut(s) 169, 188, 210, 480
MluNI TGGCCA 2 cut(s) 435, 616
MmeI TCCRAC 2 cut(s) 379, 556
Mox20I TGGCCA 2 cut(s) 435, 616
MscI TGGCCA 2 cut(s) 435, 616
Msp20I TGGCCA 2 cut(s) 435, 616
MspI CCGG 2 cut(s) 599, 800
MspR9I CCNGG 6 cut(s) 356, 599, 600, 758, 801, 828
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 3 cut(s) 356, 758, 828
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 202, 791
NciI CCSGG 3 cut(s) 599, 600, 801
NdeII GATC 4 cut(s) 100, 174, 693, 925
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 2 cut(s) 282, 518
NlaIV GGNNCC 6 cut(s) 80, 663, 724, 762, 763, 774
NmuCI GTSAC 1 cut(s) 727
PauI GCGCGC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PctI GAATGC 1 cut(s) 448
PkrI GCNGC 3 cut(s) 73, 424, 787
PpuMI RGGWCCY 2 cut(s) 358, 761
Psp124BI GAGCTC 2 cut(s) 533, 554
Psp5II RGGWCCY 2 cut(s) 358, 761
Psp6I CCWGG 3 cut(s) 354, 756, 826
PspEI GGTNACC 1 cut(s) 350
PspFI CCCAGC 2 cut(s) 201, 719
PspGI CCWGG 3 cut(s) 354, 756, 826
PspN4I GGNNCC 6 cut(s) 80, 663, 724, 762, 763, 774
PspPI GGNCC 5 cut(s) 140, 358, 638, 723, 761
PspPPI RGGWCCY 2 cut(s) 358, 761
PteI GCGCGC 1 cut(s) 205
RsaI GTAC 2 cut(s) 511, 905
RsaNI GTAC 2 cut(s) 510, 904
SacI GAGCTC 2 cut(s) 533, 554
SatI GCNGC 3 cut(s) 72, 423, 786
Sau3AI GATC 4 cut(s) 100, 174, 693, 925
Sau96I GGNCC 5 cut(s) 140, 358, 638, 723, 761
ScaI AGTACT 1 cut(s) 905
ScrFI CCNGG 6 cut(s) 356, 599, 600, 758, 801, 828
SduI GDGCHC 2 cut(s) 533, 554
SexAI ACCWGGT 1 cut(s) 354
SfaNI GCATC 1 cut(s) 844
SinI GGWCC 4 cut(s) 358, 638, 723, 761
SmaI CCCGGG 1 cut(s) 600
Sse9I AATT 4 cut(s) 169, 188, 210, 480
SspMI CTAG 5 cut(s) 75, 498, 704, 708, 870
SstI GAGCTC 2 cut(s) 533, 554
StyD4I CCNGG 6 cut(s) 354, 597, 598, 756, 799, 826
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 3 cut(s) 417, 689, 727
TaqI TCGA 1 cut(s) 363
TasI AATT 4 cut(s) 169, 188, 210, 480
TatI WGTACW 1 cut(s) 903
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 3 cut(s) 71, 422, 785
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 2 cut(s) 214, 526
TspMI CCCGGG 1 cut(s) 598
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 4 cut(s) 358, 638, 723, 761
XapI RAATTY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 3 cut(s) 134, 632, 655
XmaI CCCGGG 1 cut(s) 598
XspI CTAG 5 cut(s) 75, 498, 704, 708, 870
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.