Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

69908034 .. 69909069

Gene Structure 1036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTGCTTTTGCTTCCTCTTATCTACTTCTACAACTAGTCCTGCTCATCTCTTTGTTCTATTTTGGCTCAGCAGCTAGGAGCCTTGCTGAGACCTCAGACCAAACCCAGCAGCCTATACTATTCCAATACCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGGAAATTCAAGCCTTCGCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTATTCTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAGAAATACTACCACCTCTCCAATGCCAAGAAAACATCATCTCTTTCCCTATCATTGGGTACCCAAATCCTCGACGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGCAAACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTCTTGACCTCATCAGATGTTCTAATTGATGGGTTCTGCTCCAGCAAATGTGGTACACACGGGTCTTCAAAGAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGATCCAATGCCCGGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCCAACAATGATGTGGGTTTGGACGGTATGATCATCAATCTAGCTAGTCTTTTGGCGGGGACTGTGACCAACCCTTTTGGAAATGGGTTCTACCAAGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCTGGTGTCTATGGGAAAGGAGCTTATCCTGGTTACGCCGGAGACCTCTTGGTTGATGCTACAACTGGTGCCAGCTACAATGCCAATGGTTTGAATGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCTTCAACCTCAACTTGTTCTACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

320

Amino Acids

34.04

Weight (kDa)

8.88

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	43 - 319	2.7e-123	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	353, 869
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	722
AclWI	GGATC	1 cut(s)	586
AcoI	YGGCCR	2 cut(s)	436, 617
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	3 cut(s)	355, 514, 908
AfiI	CCNNNNNNNGG	3 cut(s)	349, 601, 638
AgsI	TTSAA	4 cut(s)	193, 528, 895, 936
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	802, 829
AluBI	AGCT	7 cut(s)	77, 375, 534, 555, 710, 824, 876
AluI	AGCT	7 cut(s)	77, 375, 534, 555, 710, 824, 876
Alw21I	GWGCWC	2 cut(s)	536, 557
Alw26I	GTCTC	2 cut(s)	86, 837
AlwI	GGATC	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	601
AoxI	GGCC	3 cut(s)	139, 436, 617
ApeKI	GCWGC	6 cut(s)	5, 74, 112, 202, 425, 788
ApoI	RAATTY	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	207, 209
AspS9I	GGNCC	3 cut(s)	140, 641, 764
AsuC2I	CCSGG	2 cut(s)	602, 603
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	2 cut(s)	641, 764
BalI	TGGCCA	2 cut(s)	438, 619
BanI	GGYRCC	2 cut(s)	353, 869
BanII	GRGCYC	2 cut(s)	536, 557
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	536, 557
BbvI	GCAGC	5 cut(s)	86, 124, 214, 437, 775
BccI	CCATC	6 cut(s)	173, 259, 274, 458, 482, 633
BciT130I	CCWGG	2 cut(s)	804, 831
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	2 cut(s)	602, 603
BcoDI	GTCTC	2 cut(s)	86, 837
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	4 cut(s)	38, 78, 707, 711
BisI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 789
BlpI	GCTNAGC	1 cut(s)	70
BlsI	GCNGC	6 cut(s)	7, 76, 114, 204, 427, 790
BmcAI	AGTACT	1 cut(s)	908
Bme1390I	CCNGG	4 cut(s)	602, 603, 804, 831
Bme18I	GGWCC	2 cut(s)	641, 764
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	140, 641, 764
BmiI	GGNNCC	5 cut(s)	83, 355, 766, 777, 871
BmrFI	CCNGG	4 cut(s)	602, 603, 804, 831
BmsI	GCATC	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	516
BplI	GAGNNNNNCTC	4 cut(s)	362, 394, 364, 396
BpmI	CTGGAG	1 cut(s)	484
Bpu1102I	GCTNAGC	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	602, 603
BsaI	GGTCTC	2 cut(s)	86, 837
BsaJI	CCNNGG	3 cut(s)	429, 601, 760
BsaXI	ACNNNNNCTCC	4 cut(s)	232, 262, 296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 601, 638
Bse1I	ACTGG	2 cut(s)	157, 871
BseBI	CCWGG	2 cut(s)	804, 831
BseDI	CCNNGG	3 cut(s)	429, 601, 760
BseLI	CCNNNNNNNGG	3 cut(s)	349, 601, 638
BseMII	CTCAG	3 cut(s)	81, 84, 111
BseNI	ACTGG	2 cut(s)	157, 871
BsePI	GCGCGC	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	86, 124, 214, 437, 775
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	141, 438, 619
BshNI	GGYRCC	2 cut(s)	353, 869
BsiHKAI	GWGCWC	2 cut(s)	536, 557
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	602, 840
BslFI	GGGAC	3 cut(s)	376, 739, 750
BslI	CCNNNNNNNGG	3 cut(s)	349, 601, 638
BsmAI	GTCTC	2 cut(s)	86, 837
BsmFI	GGGAC	3 cut(s)	376, 739, 750
BsnI	GGCC	3 cut(s)	141, 438, 619
Bso31I	GGTCTC	2 cut(s)	86, 837
BsoBI	CYCGRG	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	536, 557
Bsp143I	GATC	3 cut(s)	174, 591, 696
Bsp1720I	GCTNAGC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	722
BspANI	GGCC	3 cut(s)	141, 438, 619
BspCNI	CTCAG	3 cut(s)	82, 83, 110
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	5 cut(s)	83, 355, 766, 777, 871
BspPI	GGATC	1 cut(s)	586
BspT107I	GGYRCC	2 cut(s)	353, 869
BspTNI	GGTCTC	2 cut(s)	86, 837
BsrI	ACTGG	2 cut(s)	157, 871
BssECI	CCNNGG	3 cut(s)	429, 601, 760
BssHII	GCGCGC	1 cut(s)	205
BssMI	GATC	3 cut(s)	174, 591, 696
BssT1I	CCWWGG	2 cut(s)	429, 760
Bst2UI	CCWGG	2 cut(s)	804, 831
Bst4CI	ACNGT	3 cut(s)	420, 692, 730
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	207, 874
BstDEI	CTNAG	3 cut(s)	70, 90, 97
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	207, 209
BstKTI	GATC	3 cut(s)	177, 594, 699
BstMAI	GTCTC	2 cut(s)	86, 837
BstMBI	GATC	3 cut(s)	174, 591, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 202, 794
BstNI	CCWGG	2 cut(s)	804, 831
BstSCI	CCNGG	4 cut(s)	600, 601, 802, 829
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	86, 124, 214, 437, 775
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	141, 438, 619
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	207, 874
CfoI	GCGC	2 cut(s)	207, 209
Cfr13I	GGNCC	3 cut(s)	140, 641, 764
Cfr9I	CCCGGG	1 cut(s)	601
Csp6I	GTAC	3 cut(s)	354, 513, 907
CviAII	CATG	1 cut(s)	279
CviQI	GTAC	3 cut(s)	354, 513, 907
DdeI	CTNAG	3 cut(s)	70, 90, 97
DpnI	GATC	3 cut(s)	176, 593, 698
DpnII	GATC	3 cut(s)	174, 591, 696
EaeI	YGGCCR	2 cut(s)	436, 617
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	2 cut(s)	534, 555
Eco130I	CCWWGG	2 cut(s)	429, 760
Eco24I	GRGCYC	2 cut(s)	536, 557
Eco31I	GGTCTC	2 cut(s)	86, 837
Eco47I	GGWCC	2 cut(s)	641, 764
Eco53kI	GAGCTC	2 cut(s)	534, 555
Eco88I	CYCGRG	1 cut(s)	601
EcoICRI	GAGCTC	2 cut(s)	534, 555
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	802, 829
EcoT14I	CCWWGG	2 cut(s)	429, 760
EcoT38I	GRGCYC	2 cut(s)	536, 557
ErhI	CCWWGG	2 cut(s)	429, 760
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	119, 183, 280, 293, 695, 813
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	3 cut(s)	376, 739, 750
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 789
FriOI	GRGCYC	2 cut(s)	536, 557
Fsp4HI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 789
FspBI	CTAG	4 cut(s)	38, 78, 707, 711
GlaI	GCGC	2 cut(s)	206, 208
GluI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 789
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	484
HaeIII	GGCC	3 cut(s)	141, 438, 619
HapII	CCGG	2 cut(s)	602, 840
HhaI	GCGC	2 cut(s)	207, 209
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	2 cut(s)	205, 207
HinP1I	GCGC	2 cut(s)	205, 207
HpaII	CCGG	2 cut(s)	602, 840
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	6 cut(s)	100, 220, 475, 545, 581, 589
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	207, 942
HpyCH4III	ACNGT	3 cut(s)	420, 692, 730
HpyCH4V	TGCA	1 cut(s)	665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 202, 794
HpyF3I	CTNAG	3 cut(s)	70, 90, 97
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	2 cut(s)	205, 207
KpnI	GGTACC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	3 cut(s)	174, 591, 696
LmnI	GCTCC	5 cut(s)	81, 503, 560, 781, 821
Lsp1109I	GCAGC	5 cut(s)	86, 124, 214, 437, 775
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	4 cut(s)	38, 78, 707, 711
MaeIII	GTNAC	2 cut(s)	730, 833
MalI	GATC	3 cut(s)	176, 593, 698
MboI	GATC	3 cut(s)	174, 591, 696
MboII	GAAGA	3 cut(s)	137, 516, 913
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	2 cut(s)	536, 557
MlsI	TGGCCA	2 cut(s)	438, 619
MluCI	AATT	5 cut(s)	169, 188, 210, 483, 633
MluNI	TGGCCA	2 cut(s)	438, 619
MmeI	TCCRAC	1 cut(s)	559
Mox20I	TGGCCA	2 cut(s)	438, 619
MscI	TGGCCA	2 cut(s)	438, 619
Msp20I	TGGCCA	2 cut(s)	438, 619
MspI	CCGG	2 cut(s)	602, 840
MspR9I	CCNGG	4 cut(s)	602, 603, 804, 831
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	804, 831
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	11, 202, 794
NciI	CCSGG	2 cut(s)	602, 603
NdeII	GATC	3 cut(s)	174, 591, 696
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	5 cut(s)	83, 355, 766, 777, 871
NmuCI	GTSAC	1 cut(s)	730
PauI	GCGCGC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PkrI	GCNGC	6 cut(s)	7, 76, 114, 204, 427, 790
PpuMI	RGGWCCY	1 cut(s)	764
Psp124BI	GAGCTC	2 cut(s)	536, 557
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	2 cut(s)	802, 829
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	2 cut(s)	802, 829
PspN4I	GGNNCC	5 cut(s)	83, 355, 766, 777, 871
PspPI	GGNCC	3 cut(s)	140, 641, 764
PspPPI	RGGWCCY	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	591
PteI	GCGCGC	1 cut(s)	205
RsaI	GTAC	3 cut(s)	355, 514, 908
RsaNI	GTAC	3 cut(s)	354, 513, 907
SacI	GAGCTC	2 cut(s)	536, 557
SatI	GCNGC	6 cut(s)	6, 75, 113, 203, 426, 789
Sau3AI	GATC	3 cut(s)	174, 591, 696
Sau96I	GGNCC	3 cut(s)	140, 641, 764
ScaI	AGTACT	1 cut(s)	908
ScrFI	CCNGG	4 cut(s)	602, 603, 804, 831
SduI	GDGCHC	2 cut(s)	536, 557
SfaNI	GCATC	1 cut(s)	847
SinI	GGWCC	2 cut(s)	641, 764
SmaI	CCCGGG	1 cut(s)	603
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	5 cut(s)	169, 188, 210, 483, 633
SsiI	CCGC	1 cut(s)	722
SspMI	CTAG	4 cut(s)	38, 78, 707, 711
SstI	GAGCTC	2 cut(s)	536, 557
StyD4I	CCNGG	4 cut(s)	600, 601, 802, 829
StyI	CCWWGG	2 cut(s)	429, 760
TaaI	ACNGT	3 cut(s)	420, 692, 730
TaqI	TCGA	1 cut(s)	366
TasI	AATT	5 cut(s)	169, 188, 210, 483, 633
TatI	WGTACW	1 cut(s)	906
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	6 cut(s)	5, 74, 112, 202, 425, 788
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	2 cut(s)	214, 529
TspGWI	ACGGA	1 cut(s)	654
TspMI	CCCGGG	1 cut(s)	601
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	641, 764
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	2 cut(s)	134, 676
XmaI	CCCGGG	1 cut(s)	601
XspI	CTAG	4 cut(s)	38, 78, 707, 711
ZrmI	AGTACT	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.