Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001036.1

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

6134 .. 6616

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001036.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgtggcacacatgggtattcaagaagctctttccttcgaggcaagagctccaaattcgcttacatttgggtctcaagagttaccttacatctgggaaactccaacacccagtgccctggtcaatgtgcttggccattccatcagccaatttatggaccacaatctccagctttgattgcacccaacaacgtgtgggtgtgggtgtggatggcatgatcataaacctggctagccttttggctgggactgtgaccaacccttttgggaatgggctctatcagggtcccaaagaggctccattagaggctgcttcggcttgtcctggtgtctatgggaaaggggcacatcctggttatgctggagacctattggttgatgctacaactggtgctagctacaatgccaatggttttaacgggaagaagtacttgctccctgctttgttcgatccctcaacctcaacttgttcaactattgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

160

Amino Acids

17.1

Weight (kDa)

8.71

Isoelectric Point (pI)

23.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	54
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	22, 471
AjnI	CCWGG	4 cut(s)	116, 225, 322, 349
AluBI	AGCT	4 cut(s)	28, 49, 171, 396
AluI	AGCT	4 cut(s)	28, 49, 171, 396
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	77, 357
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	156, 284
AsuNHI	GCTAGC	2 cut(s)	230, 392
AvaII	GGWCC	2 cut(s)	156, 284
BaeGI	GKGCMC	2 cut(s)	117, 346
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	51, 276
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	148, 203
BciT130I	CCWGG	4 cut(s)	118, 227, 324, 351
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	77, 357
BfaI	CTAG	2 cut(s)	231, 393
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	4 cut(s)	118, 227, 324, 351
Bme18I	GGWCC	2 cut(s)	156, 284
BmgT120I	GGNCC	2 cut(s)	156, 284
BmiI	GGNNCC	3 cut(s)	285, 286, 297
BmrFI	CCNGG	4 cut(s)	118, 227, 324, 351
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	367
BmtI	GCTAGC	2 cut(s)	234, 396
BmuI	ACTGGG	1 cut(s)	104
BpmI	CTGGAG	2 cut(s)	151, 381
BpuEI	CTTGAG	1 cut(s)	59
BsaI	GGTCTC	2 cut(s)	77, 357
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	2 cut(s)	110, 391
BseBI	CCWGG	4 cut(s)	118, 227, 324, 351
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	214, 346
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	110, 391
BseSI	GKGCMC	2 cut(s)	117, 346
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	259, 270
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	77, 357
BsmFI	GGGAC	2 cut(s)	259, 270
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	2 cut(s)	77, 357
Bsp1286I	GDGCHC	4 cut(s)	51, 117, 276, 346
Bsp143I	GATC	2 cut(s)	216, 448
BspANI	GGCC	1 cut(s)	134
BspLI	GGNNCC	3 cut(s)	285, 286, 297
BspOI	GCTAGC	2 cut(s)	234, 396
BspPI	GGATC	1 cut(s)	443
BspTNI	GGTCTC	2 cut(s)	77, 357
BsrI	ACTGG	2 cut(s)	110, 391
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	2 cut(s)	216, 448
Bst2UI	CCWGG	4 cut(s)	118, 227, 324, 351
Bst4CI	ACNGT	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	232, 394
BstF5I	GGATG	2 cut(s)	214, 346
BstKTI	GATC	2 cut(s)	219, 451
BstMAI	GTCTC	2 cut(s)	77, 357
BstMBI	GATC	2 cut(s)	216, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 314
BstNI	CCWGG	4 cut(s)	118, 227, 324, 351
BstSCI	CCNGG	4 cut(s)	116, 225, 322, 349
BstSLI	GKGCMC	2 cut(s)	117, 346
BstV1I	GCAGC	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	214, 346
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	232, 394
Cfr13I	GGNCC	2 cut(s)	156, 284
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	12, 214
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	2 cut(s)	218, 450
DpnII	GATC	2 cut(s)	216, 448
DraIII	CACNNNGTG	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	2 cut(s)	51, 276
Eco31I	GGTCTC	2 cut(s)	77, 357
Eco47I	GGWCC	2 cut(s)	156, 284
Eco53kI	GAGCTC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	4 cut(s)	116, 225, 322, 349
EcoT38I	GRGCYC	2 cut(s)	51, 276
FaeI	CATG	2 cut(s)	15, 217
FaiI	YATR	6 cut(s)	13, 154, 215, 221, 333, 357
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 413, 445
FaqI	GGGAC	2 cut(s)	259, 270
FatI	CATG	2 cut(s)	11, 213
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	221, 333
FriOI	GRGCYC	2 cut(s)	51, 276
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	2 cut(s)	231, 393
GluI	GCNGC	1 cut(s)	309
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	2 cut(s)	151, 381
HaeIII	GGCC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	15, 217
Hpy188III	TCNNGA	2 cut(s)	22, 76
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 314
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	15, 217
KflI	GGGWCCC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	216, 448
LmnI	GCTCC	3 cut(s)	54, 301, 438
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	231, 393
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	2 cut(s)	80, 250
MalI	GATC	2 cut(s)	218, 450
MboI	GATC	2 cut(s)	216, 448
MboII	GAAGA	1 cut(s)	433
MhlI	GDGCHC	4 cut(s)	51, 117, 276, 346
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	2 cut(s)	54, 148
MluNI	TGGCCA	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	5 cut(s)	33, 286, 298, 463, 469
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	134
MspR9I	CCNGG	4 cut(s)	118, 227, 324, 351
MvaI	CCWGG	4 cut(s)	118, 227, 324, 351
MwoI	GCNNNNNNNGC	2 cut(s)	177, 314
NdeII	GATC	2 cut(s)	216, 448
NheI	GCTAGC	2 cut(s)	230, 392
NlaIII	CATG	2 cut(s)	15, 217
NlaIV	GGNNCC	3 cut(s)	285, 286, 297
NmuCI	GTSAC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	4 cut(s)	116, 225, 322, 349
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	4 cut(s)	116, 225, 322, 349
PspN4I	GGNNCC	3 cut(s)	285, 286, 297
PspPI	GGNCC	2 cut(s)	156, 284
PspPPI	RGGWCCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	216, 448
Sau96I	GGNCC	2 cut(s)	156, 284
ScaI	AGTACT	1 cut(s)	428
ScrFI	CCNGG	4 cut(s)	118, 227, 324, 351
SduI	GDGCHC	4 cut(s)	51, 117, 276, 346
SetI	ASST	9 cut(s)	30, 51, 87, 173, 193, 228, 369, 398, 461
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	2 cut(s)	156, 284
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	54, 148
SspMI	CTAG	2 cut(s)	231, 393
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	116, 225, 322, 349
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	38, 447
TasI	AATT	2 cut(s)	54, 148
TatI	WGTACW	1 cut(s)	426
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	156, 284
XapI	RAATTY	1 cut(s)	54
XspI	CTAG	2 cut(s)	231, 393
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.