Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTGCTTTTGCTTCCTCTTATCTTTTTCTACAACTAGTCCTGCTCATCTCCTTGTTCTATTTTGGCTCAGCAGCTAGGAGCCTTGCTGAGACCTTTGACCAAACCCAGCAGCCTATACTATTCCAATACCACAATGGCCCTCTTCTCACTGGTAAAATCTCCATCAATTTGATCTGGTACGGAAAATTCAAGCCTTTGCAGCGCTCAATTGTTTCTGATTTCATCACCTCCCTTTCCACTTCTTCTCAGTCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAAAAATACTACCACCACTCCAATGCCAAGAAAACCTCATCTCTTTACCTCTCATTGGGTAACCAAATCCTCGATGAGAGCTACTCTATGGGCAAGTCCCTATCTGTTGGAAAACACATCAAACAGTTGGCAGCCAAGGGTGACCAGAGTAATGCCATCAATGTTGTTTTAACCTCATCAGATGTTCTTATTGATGGATTTTGCTCTAGCAGATGTGGTACACACGGGTCTTCAAAGAGCTCTTTCATCAGTGGCAAGAGCTCCAAGTTTGCATACATCTGGGTCGGAAACTCAGAGACCCAATGCCCTGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCGAACAATGATGTGGGTTTGGACGGTATGATCATCAATCTGGCTAGCCTTTTGGCGGGGACTGTGACCAACCCTTTTGGAAATGGATTCTACCAGGGTCCCAAAGAGGCTGCTTCGGCTTGTCTTGGTGTCTATGGGAAAGGAGCTTATCCTGGTTATGCAGGAGACCTCTTGGATGATGCTACAACTGGTGCTAGCTACAATGCCAATGGTTTGAATGGGAAGAAGTATTTGCTGCCTGCTTTGTTTGACCCTTCAACCTCAGCTTGTTCCACTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

316

Amino Acids

33.86

Weight (kDa)

8.6

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	1 cut(s)	722
AcoI	YGGCCR	1 cut(s)	617
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	2 cut(s)	182, 514
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	349, 638, 721
AgsI	TTSAA	4 cut(s)	193, 528, 883, 924
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	601, 759, 817
AluBI	AGCT	7 cut(s)	77, 375, 534, 555, 812, 864, 932
AluI	AGCT	7 cut(s)	77, 375, 534, 555, 812, 864, 932
Alw21I	GWGCWC	2 cut(s)	536, 557
Alw26I	GTCTC	3 cut(s)	86, 584, 825
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	2 cut(s)	139, 617
ApeKI	GCWGC	7 cut(s)	5, 74, 112, 202, 425, 776, 901
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	140, 641, 764
AsuHPI	GGTGA	2 cut(s)	220, 446
AsuNHI	GCTAGC	2 cut(s)	710, 860
AvaII	GGWCC	2 cut(s)	641, 764
BalI	TGGCCA	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	536, 557
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	536, 557
BbvCI	CCTCAGC	1 cut(s)	928
BbvI	GCAGC	6 cut(s)	86, 124, 214, 437, 763, 888
BccI	CCATC	5 cut(s)	173, 274, 458, 482, 633
BciT130I	CCWGG	3 cut(s)	603, 761, 819
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	3 cut(s)	86, 584, 825
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	6 cut(s)	38, 78, 501, 711, 861, 944
BfoI	RGCGCY	1 cut(s)	208
BisI	GCNGC	7 cut(s)	6, 75, 113, 203, 426, 777, 902
BlpI	GCTNAGC	1 cut(s)	70
BlsI	GCNGC	7 cut(s)	7, 76, 114, 204, 427, 778, 903
Bme1390I	CCNGG	3 cut(s)	603, 761, 819
Bme18I	GGWCC	2 cut(s)	641, 764
BmgT120I	GGNCC	3 cut(s)	140, 641, 764
BmiI	GGNNCC	3 cut(s)	83, 765, 766
BmrFI	CCNGG	3 cut(s)	603, 761, 819
BmsI	GCATC	1 cut(s)	835
BmtI	GCTAGC	2 cut(s)	714, 864
BpiI	GAAGAC	1 cut(s)	516
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
Bpu10I	CCTNAGC	1 cut(s)	928
Bpu1102I	GCTNAGC	1 cut(s)	70
BsaI	GGTCTC	3 cut(s)	86, 584, 825
BsaJI	CCNNGG	3 cut(s)	429, 601, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 638, 721
Bse1I	ACTGG	2 cut(s)	157, 859
BseBI	CCWGG	3 cut(s)	603, 761, 819
BseDI	CCNNGG	3 cut(s)	429, 601, 760
BseGI	GGATG	1 cut(s)	847
BseLI	CCNNNNNNNGG	3 cut(s)	349, 638, 721
BseMII	CTCAG	5 cut(s)	81, 84, 263, 600, 942
BseNI	ACTGG	2 cut(s)	157, 859
BseXI	GCAGC	6 cut(s)	86, 124, 214, 437, 763, 888
BseYI	CCCAGC	1 cut(s)	108
BshFI	GGCC	2 cut(s)	141, 619
BsiHKAI	GWGCWC	2 cut(s)	536, 557
BslFI	GGGAC	3 cut(s)	376, 739, 750
BslI	CCNNNNNNNGG	3 cut(s)	349, 638, 721
BsmAI	GTCTC	3 cut(s)	86, 584, 825
BsmFI	GGGAC	3 cut(s)	376, 739, 750
BsnI	GGCC	2 cut(s)	141, 619
Bso31I	GGTCTC	3 cut(s)	86, 584, 825
Bsp1286I	GDGCHC	2 cut(s)	536, 557
Bsp143I	GATC	2 cut(s)	174, 696
Bsp1720I	GCTNAGC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	722
BspANI	GGCC	2 cut(s)	141, 619
BspCNI	CTCAG	5 cut(s)	82, 83, 262, 599, 941
BspLI	GGNNCC	3 cut(s)	83, 765, 766
BspOI	GCTAGC	2 cut(s)	714, 864
BspTNI	GGTCTC	3 cut(s)	86, 584, 825
BsrI	ACTGG	2 cut(s)	157, 859
BssECI	CCNNGG	3 cut(s)	429, 601, 760
BssMI	GATC	2 cut(s)	174, 696
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	3 cut(s)	603, 761, 819
Bst4CI	ACNGT	3 cut(s)	420, 692, 730
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	712, 862, 906
BstDEI	CTNAG	5 cut(s)	70, 90, 249, 586, 928
BstEII	GGTNACC	2 cut(s)	353, 434
BstF5I	GGATG	1 cut(s)	847
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	2 cut(s)	177, 699
BstMAI	GTCTC	3 cut(s)	86, 584, 825
BstMBI	GATC	2 cut(s)	174, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 202, 782
BstNI	CCWGG	3 cut(s)	603, 761, 819
BstPI	GGTNACC	2 cut(s)	353, 434
BstSCI	CCNGG	3 cut(s)	601, 759, 817
BstV1I	GCAGC	6 cut(s)	86, 124, 214, 437, 763, 888
BstV2I	GAAGAC	1 cut(s)	516
BstXI	CCANNNNNNTGG	1 cut(s)	602
BsuRI	GGCC	2 cut(s)	141, 619
BtsCI	GGATG	1 cut(s)	847
BtsIMutI	CAGTG	2 cut(s)	150, 550
Cac8I	GCNNGC	3 cut(s)	712, 862, 906
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	140, 641, 764
Csp6I	GTAC	2 cut(s)	181, 513
CviAII	CATG	1 cut(s)	279
CviQI	GTAC	2 cut(s)	181, 513
DdeI	CTNAG	5 cut(s)	70, 90, 249, 586, 928
DpnI	GATC	2 cut(s)	176, 698
DpnII	GATC	2 cut(s)	174, 696
EaeI	YGGCCR	1 cut(s)	617
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	2 cut(s)	534, 555
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	536, 557
Eco31I	GGTCTC	3 cut(s)	86, 584, 825
Eco47I	GGWCC	2 cut(s)	641, 764
Eco47III	AGCGCT	1 cut(s)	206
Eco53kI	GAGCTC	2 cut(s)	534, 555
Eco91I	GGTNACC	2 cut(s)	353, 434
EcoICRI	GAGCTC	2 cut(s)	534, 555
EcoO109I	RGGNCCY	1 cut(s)	764
EcoO65I	GGTNACC	2 cut(s)	353, 434
EcoRII	CCWGG	3 cut(s)	601, 759, 817
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	536, 557
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	1 cut(s)	282
FaiI	YATR	8 cut(s)	119, 280, 293, 383, 568, 695, 801, 825
FaqI	GGGAC	3 cut(s)	376, 739, 750
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	7 cut(s)	6, 75, 113, 203, 426, 777, 902
FokI	GGATG	1 cut(s)	854
FriOI	GRGCYC	2 cut(s)	536, 557
Fsp4HI	GCNGC	7 cut(s)	6, 75, 113, 203, 426, 777, 902
FspBI	CTAG	6 cut(s)	38, 78, 501, 711, 861, 944
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	7 cut(s)	6, 75, 113, 203, 426, 777, 902
GsaI	CCCAGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	141, 619
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	753
HphI	GGTGA	2 cut(s)	220, 446
Hpy166II	GTNNAC	2 cut(s)	255, 515
Hpy188I	TCNGA	4 cut(s)	220, 475, 581, 589
Hpy8I	GTNNAC	2 cut(s)	255, 515
HpyAV	CCTTC	1 cut(s)	930
HpyCH4III	ACNGT	3 cut(s)	420, 692, 730
HpyCH4V	TGCA	4 cut(s)	202, 566, 665, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 202, 782
HpyF3I	CTNAG	5 cut(s)	70, 90, 249, 586, 928
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	205
KflI	GGGWCCC	1 cut(s)	764
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	174, 696
LmnI	GCTCC	3 cut(s)	81, 560, 809
Lsp1109I	GCAGC	6 cut(s)	86, 124, 214, 437, 763, 888
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	6 cut(s)	38, 78, 501, 711, 861, 944
MaeIII	GTNAC	3 cut(s)	353, 434, 730
MalI	GATC	2 cut(s)	176, 698
MboI	GATC	2 cut(s)	174, 696
MboII	GAAGA	4 cut(s)	137, 237, 516, 901
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	536, 557
MlsI	TGGCCA	1 cut(s)	619
MluCI	AATT	4 cut(s)	169, 188, 210, 633
MluNI	TGGCCA	1 cut(s)	619
MmeI	TCCRAC	2 cut(s)	382, 559
Mox20I	TGGCCA	1 cut(s)	619
MscI	TGGCCA	1 cut(s)	619
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	619
MspR9I	CCNGG	3 cut(s)	603, 761, 819
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	3 cut(s)	603, 761, 819
MwoI	GCNNNNNNNGC	3 cut(s)	11, 202, 782
NdeII	GATC	2 cut(s)	174, 696
NheI	GCTAGC	2 cut(s)	710, 860
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	3 cut(s)	83, 765, 766
NmuCI	GTSAC	2 cut(s)	434, 730
PfeI	GAWTC	1 cut(s)	753
PkrI	GCNGC	7 cut(s)	7, 76, 114, 204, 427, 778, 903
PpuMI	RGGWCCY	1 cut(s)	764
Psp124BI	GAGCTC	2 cut(s)	536, 557
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	3 cut(s)	601, 759, 817
PspEI	GGTNACC	2 cut(s)	353, 434
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	3 cut(s)	601, 759, 817
PspN4I	GGNNCC	3 cut(s)	83, 765, 766
PspPI	GGNCC	3 cut(s)	140, 641, 764
PspPPI	RGGWCCY	1 cut(s)	764
RsaI	GTAC	2 cut(s)	182, 514
RsaNI	GTAC	2 cut(s)	181, 513
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	2 cut(s)	536, 557
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	7 cut(s)	6, 75, 113, 203, 426, 777, 902
Sau3AI	GATC	2 cut(s)	174, 696
Sau96I	GGNCC	3 cut(s)	140, 641, 764
ScrFI	CCNGG	3 cut(s)	603, 761, 819
SduI	GDGCHC	2 cut(s)	536, 557
SfaNI	GCATC	1 cut(s)	835
SinI	GGWCC	2 cut(s)	641, 764
SmiMI	CAYNNNNRTG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	4 cut(s)	169, 188, 210, 633
SsiI	CCGC	1 cut(s)	722
SspMI	CTAG	6 cut(s)	38, 78, 501, 711, 861, 944
SstI	GAGCTC	2 cut(s)	536, 557
StyD4I	CCNGG	3 cut(s)	601, 759, 817
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	420, 692, 730
TaqI	TCGA	1 cut(s)	366
TasI	AATT	4 cut(s)	169, 188, 210, 633
TfiI	GAWTC	1 cut(s)	753
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	2 cut(s)	157, 550
TseFI	GTSAC	2 cut(s)	434, 730
TseI	GCWGC	7 cut(s)	5, 74, 112, 202, 425, 776, 901
Tsp45I	GTSAC	2 cut(s)	434, 730
TspDTI	ATGAA	2 cut(s)	214, 529
TspGWI	ACGGA	2 cut(s)	198, 654
TspRI	CASTG	2 cut(s)	157, 550
VpaK11BI	GGWCC	2 cut(s)	641, 764
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	6 cut(s)	38, 78, 501, 711, 861, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.