Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009153.1

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

4318 .. 4899

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009153.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ctgggcaagtccctatctgttggcaaacacatcaaacagttggcagccaagggtggccagagtaatgccatcaatgttgtcttgacctcatcagatgttctaattgatgggttttgctccagcaaatgtggtacacacgggtcttcaaaaagctctttcatcagaggcaagagctccaagtttgcttacatctgggtcggaaactccgagacccaatgcccgggtcaatgtgcttggccattccaccaacctatctatggaccacagaccacacctttggtggcacccaacaacgatgtcggtgtggacggtatgatcatcaatctagctagtcttttggctgggaccgtgaccaacccttttggaaatgggttctaccagggtaccaaagaggctccattagaggctgcatcagcttgtcctggagtttatgctaaaggagcttatcctggctacgctggagacctcttggttgatgctacgactggtgccagctacaacgccaatggtttgaatgggaagaagtacttgcttcctgctttgtttgacccttcaacctcaacttgttctactcttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009505 GO:0009628 GO:0012505 GO:0030312 GO:0036293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

193

Amino Acids

19.89

Weight (kDa)

8.51

Isoelectric Point (pI)

23.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	3 cut(s)	283, 383, 488
AcoI	YGGCCR	2 cut(s)	55, 236
AfaI	GTAC	3 cut(s)	133, 385, 527
AfiI	CCNNNNNNNGG	2 cut(s)	220, 257
AgsI	TTSAA	3 cut(s)	147, 514, 555
AjnI	CCWGG	3 cut(s)	378, 421, 448
AluBI	AGCT	6 cut(s)	153, 174, 329, 416, 443, 495
AluI	AGCT	6 cut(s)	153, 174, 329, 416, 443, 495
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	2 cut(s)	203, 456
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	2 cut(s)	55, 236
ApeKI	GCWGC	2 cut(s)	44, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
Asp718I	GGTACC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	260, 345
AsuC2I	CCSGG	2 cut(s)	221, 222
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	260, 345
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
BalI	TGGCCA	2 cut(s)	57, 238
BanI	GGYRCC	3 cut(s)	283, 383, 488
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	56, 394
BccI	CCATC	2 cut(s)	77, 101
BciT130I	CCWGG	3 cut(s)	380, 423, 450
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	221, 222
BcoDI	GTCTC	2 cut(s)	203, 456
BfaI	CTAG	2 cut(s)	326, 330
BisI	GCNGC	2 cut(s)	45, 408
BlsI	GCNGC	2 cut(s)	46, 409
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	5 cut(s)	221, 222, 380, 423, 450
Bme18I	GGWCC	2 cut(s)	260, 345
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	260, 345
BmiI	GGNNCC	5 cut(s)	285, 346, 385, 396, 490
BmrFI	CCNGG	5 cut(s)	221, 222, 380, 423, 450
BmsI	GCATC	2 cut(s)	419, 466
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	3 cut(s)	103, 444, 480
BpuMI	CCSGG	2 cut(s)	221, 222
BsaI	GGTCTC	2 cut(s)	203, 456
BsaJI	CCNNGG	3 cut(s)	48, 220, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 257
Bse1I	ACTGG	1 cut(s)	490
BseBI	CCWGG	3 cut(s)	380, 423, 450
BseDI	CCNNGG	3 cut(s)	48, 220, 379
BseLI	CCNNNNNNNGG	2 cut(s)	220, 257
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	56, 394
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	57, 238
BshNI	GGYRCC	3 cut(s)	283, 383, 488
BsiHKAI	GWGCWC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	220, 257
BsmAI	GTCTC	2 cut(s)	203, 456
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	57, 238
Bso31I	GGTCTC	2 cut(s)	203, 456
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	57, 238
BspLI	GGNNCC	5 cut(s)	285, 346, 385, 396, 490
BspT107I	GGYRCC	3 cut(s)	283, 383, 488
BspTNI	GGTCTC	2 cut(s)	203, 456
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	48, 220, 379
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	3 cut(s)	380, 423, 450
Bst4CI	ACNGT	3 cut(s)	39, 311, 349
BstC8I	GCNNGC	1 cut(s)	493
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	2 cut(s)	203, 456
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 440
BstNI	CCWGG	3 cut(s)	380, 423, 450
BstSCI	CCNGG	5 cut(s)	219, 220, 378, 421, 448
BstV1I	GCAGC	2 cut(s)	56, 394
BstV2I	GAAGAC	1 cut(s)	135
BstXI	CCANNNNNNTGG	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	57, 238
Cac8I	GCNNGC	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	260, 345
Cfr9I	CCCGGG	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	132, 384, 526
CviQI	GTAC	3 cut(s)	132, 384, 526
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
EaeI	YGGCCR	2 cut(s)	55, 236
Ecl136II	GAGCTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	176
Eco31I	GGTCTC	2 cut(s)	203, 456
Eco47I	GGWCC	2 cut(s)	260, 345
Eco53kI	GAGCTC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	174
EcoRII	CCWGG	3 cut(s)	378, 421, 448
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	48
FaiI	YATR	3 cut(s)	258, 314, 432
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	45, 408
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	45, 408
FspBI	CTAG	2 cut(s)	326, 330
GluI	GCNGC	2 cut(s)	45, 408
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	3 cut(s)	103, 444, 480
HaeIII	GGCC	2 cut(s)	57, 238
HapII	CCGG	1 cut(s)	221
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	134, 307
Hpy188I	TCNGA	4 cut(s)	94, 164, 200, 208
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	134, 307
HpyAV	CCTTC	1 cut(s)	561
HpyCH4III	ACNGT	3 cut(s)	39, 311, 349
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 440
KpnI	GGTACC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	4 cut(s)	122, 179, 400, 440
Lsp1109I	GCAGC	2 cut(s)	56, 394
LweI	GCATC	2 cut(s)	419, 466
MaeI	CTAG	2 cut(s)	326, 330
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	2 cut(s)	135, 532
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	2 cut(s)	57, 238
MluCI	AATT	1 cut(s)	102
MluNI	TGGCCA	2 cut(s)	57, 238
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	6 cut(s)	97, 158, 385, 397, 476, 568
Mox20I	TGGCCA	2 cut(s)	57, 238
MscI	TGGCCA	2 cut(s)	57, 238
Msp20I	TGGCCA	2 cut(s)	57, 238
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	5 cut(s)	221, 222, 380, 423, 450
MvaI	CCWGG	3 cut(s)	380, 423, 450
MwoI	GCNNNNNNNGC	2 cut(s)	413, 440
NciI	CCSGG	2 cut(s)	221, 222
NdeII	GATC	1 cut(s)	315
NlaIV	GGNNCC	5 cut(s)	285, 346, 385, 396, 490
NmuCI	GTSAC	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	46, 409
Psp124BI	GAGCTC	1 cut(s)	176
Psp6I	CCWGG	3 cut(s)	378, 421, 448
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	3 cut(s)	378, 421, 448
PspN4I	GGNNCC	5 cut(s)	285, 346, 385, 396, 490
PspPI	GGNCC	2 cut(s)	260, 345
RsaI	GTAC	3 cut(s)	133, 385, 527
RsaNI	GTAC	3 cut(s)	132, 384, 526
SacI	GAGCTC	1 cut(s)	176
SatI	GCNGC	2 cut(s)	45, 408
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	2 cut(s)	260, 345
ScaI	AGTACT	1 cut(s)	527
ScrFI	CCNGG	5 cut(s)	221, 222, 380, 423, 450
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	2 cut(s)	419, 466
SinI	GGWCC	2 cut(s)	260, 345
SmaI	CCCGGG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	102
SspMI	CTAG	2 cut(s)	326, 330
SstI	GAGCTC	1 cut(s)	176
StyD4I	CCNGG	5 cut(s)	219, 220, 378, 421, 448
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	3 cut(s)	39, 311, 349
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	2 cut(s)	44, 407
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	148
TspMI	CCCGGG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	260, 345
XcmI	CCANNNNNNNNNTGG	2 cut(s)	254, 277
XmaI	CCCGGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	326, 330
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.