Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008223.1

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 696

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008223.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 695 bp

atggcttcttcttcttcttcatcaacccagttgatactctcactcttcttagtggtctcactcttccaagtatcactggcttcttctaggttgttccaagtctccttggcaacaaggaggctcagtgagcttgtccaagaccagtcccagcttcttaagtaccataacggtcctcttctcaacggcaaaatcgccatcaatctcatctggtacggcaacttcaagcctgcccagaaagccattgtttccgatttcatcacctccttatcttcttcctcaccggtccaatcaaacaagccctccgtcgccacctggtggaagaccaccgagaagtactaccacctcacctccaagaagtcctctctttcccttgctctcgggaaacaaatttccgacgagaaatactcgctcggaaagtcgctcaccaacaaacagattgtaaagttggcttctctgggtgaccagaagaacgcaatcaacgtggtcttgacttcagccgatgttgccgtcgacgggttctgcatgaaccgatgcggcacccatggggctgcttcgggctcatctcacatccgaggcaagaactacaagttcgcttacatttgggtcggaaactccgagacccagtgcccgggactctgcgcctggcccttccaccagcccctctacggcccacagagcccaccgctcgttgcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0012505 GO:0014070 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

232

Amino Acids

25.23

Weight (kDa)

9.65

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	315
AccBSI	CCGCTC	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	2 cut(s)	534, 683
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	477
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	161, 212, 335
AfiI	CCNNNNNNNGG	4 cut(s)	315, 513, 628, 665
AflII	CTTAAG	1 cut(s)	155
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	311, 641
AluBI	AGCT	2 cut(s)	130, 151
AluI	AGCT	2 cut(s)	130, 151
Alw26I	GTCTC	3 cut(s)	61, 106, 611
Ama87I	CYCGRG	2 cut(s)	377, 628
AoxI	GGCC	2 cut(s)	644, 667
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	387
AsiGI	ACCGGT	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	4 cut(s)	170, 283, 645, 668
AsuC2I	CCSGG	2 cut(s)	629, 630
AsuHPI	GGTGA	5 cut(s)	250, 270, 337, 415, 470
AvaI	CYCGRG	2 cut(s)	377, 628
AvaII	GGWCC	2 cut(s)	170, 283
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	2 cut(s)	560, 680
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	4 cut(s)	199, 229, 491, 682
BciT130I	CCWGG	2 cut(s)	313, 643
BcnI	CCSGG	2 cut(s)	629, 630
BcoDI	GTCTC	3 cut(s)	61, 106, 611
BfaI	CTAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	155
BisI	GCNGC	2 cut(s)	535, 549
BlsI	GCNGC	2 cut(s)	536, 550
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	4 cut(s)	313, 629, 630, 643
Bme18I	GGWCC	2 cut(s)	170, 283
BmeT110I	CYCGRG	2 cut(s)	377, 628
BmgT120I	GGNCC	4 cut(s)	170, 283, 645, 668
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	4 cut(s)	313, 629, 630, 643
BmrI	ACTGGG	2 cut(s)	22, 616
BmsI	GCATC	1 cut(s)	521
BmuI	ACTGGG	2 cut(s)	22, 616
BpiI	GAAGAC	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpuMI	CCSGG	2 cut(s)	629, 630
BsaI	GGTCTC	2 cut(s)	61, 611
BsaJI	CCNNGG	4 cut(s)	105, 541, 571, 628
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	6 cut(s)	109, 139, 284, 314, 332, 362
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 513, 628, 665
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	4 cut(s)	28, 81, 142, 622
BseBI	CCWGG	2 cut(s)	313, 643
BseDI	CCNNGG	4 cut(s)	105, 541, 571, 628
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	4 cut(s)	315, 513, 628, 665
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	4 cut(s)	28, 81, 142, 622
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	535
BseYI	CCCAGC	1 cut(s)	147
BshFI	GGCC	2 cut(s)	646, 669
BshNI	GGYRCC	1 cut(s)	536
BshTI	ACCGGT	1 cut(s)	280
BsiHKCI	CYCGRG	2 cut(s)	377, 628
BsiSI	CCGG	2 cut(s)	281, 629
BslFI	GGGAC	2 cut(s)	130, 645
BslI	CCNNNNNNNGG	4 cut(s)	315, 513, 628, 665
BsmAI	GTCTC	3 cut(s)	61, 106, 611
BsmFI	GGGAC	2 cut(s)	130, 645
BsnI	GGCC	2 cut(s)	646, 669
Bso31I	GGTCTC	2 cut(s)	61, 611
BsoBI	CYCGRG	2 cut(s)	377, 628
Bsp1286I	GDGCHC	3 cut(s)	560, 629, 680
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	2 cut(s)	534, 683
BspANI	GGCC	2 cut(s)	646, 669
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	536
BspTI	CTTAAG	1 cut(s)	155
BspTNI	GGTCTC	2 cut(s)	61, 611
BsrBI	CCGCTC	1 cut(s)	685
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	28, 81, 142, 622
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	4 cut(s)	105, 541, 571, 628
BssT1I	CCWWGG	2 cut(s)	105, 541
Bst2UI	CCWGG	2 cut(s)	313, 643
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	3 cut(s)	50, 68, 180
BstAFI	CTTAAG	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	49, 122
BstDSI	CCRYGG	1 cut(s)	541
BstEII	GGTNACC	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	641
BstMAI	GTCTC	3 cut(s)	61, 106, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 236, 503, 675
BstNI	CCWGG	2 cut(s)	313, 643
BstPI	GGTNACC	1 cut(s)	458
BstSCI	CCNGG	4 cut(s)	311, 627, 628, 641
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	535
BstV2I	GAAGAC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	646, 669
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	567
BtsIMutI	CAGTG	3 cut(s)	74, 130, 629
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	641
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	4 cut(s)	170, 283, 645, 668
Cfr9I	CCCGGG	1 cut(s)	628
CsiI	ACCWGGT	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	160, 211, 334
CspAI	ACCGGT	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	2 cut(s)	523, 542
CviQI	GTAC	3 cut(s)	160, 211, 334
DdeI	CTNAG	2 cut(s)	49, 122
DraIII	CACNNNGTG	1 cut(s)	315
Eam1104I	CTCTTC	3 cut(s)	50, 68, 180
EarI	CTCTTC	3 cut(s)	50, 68, 180
Eco130I	CCWWGG	2 cut(s)	105, 541
Eco24I	GRGCYC	2 cut(s)	560, 680
Eco31I	GGTCTC	2 cut(s)	61, 611
Eco47I	GGWCC	2 cut(s)	170, 283
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	2 cut(s)	377, 628
Eco91I	GGTNACC	1 cut(s)	458
EcoO65I	GGTNACC	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	311, 641
EcoT14I	CCWWGG	2 cut(s)	105, 541
EcoT38I	GRGCYC	2 cut(s)	560, 680
ErhI	CCWWGG	2 cut(s)	105, 541
FaeI	CATG	2 cut(s)	526, 545
FaiI	YATR	3 cut(s)	165, 524, 543
FaqI	GGGAC	2 cut(s)	130, 645
FatI	CATG	2 cut(s)	522, 541
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	535, 549
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	2 cut(s)	560, 680
Fsp4HI	GCNGC	2 cut(s)	535, 549
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	2 cut(s)	535, 549
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	646, 669
HapII	CCGG	2 cut(s)	281, 629
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	2 cut(s)	526, 545
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	1 cut(s)	633
HpaII	CCGG	2 cut(s)	281, 629
HphI	GGTGA	5 cut(s)	250, 270, 337, 415, 470
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	6 cut(s)	250, 394, 413, 572, 608, 616
Hpy188III	TCNNGA	2 cut(s)	379, 487
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	4 cut(s)	308, 398, 512, 515
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	2 cut(s)	522, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 236, 503, 675
HpyF3I	CTNAG	2 cut(s)	49, 122
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	2 cut(s)	526, 545
HspAI	GCGC	1 cut(s)	639
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	1 cut(s)	521
MabI	ACCWGGT	1 cut(s)	311
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	458
MbiI	CCGCTC	1 cut(s)	685
MhlI	GDGCHC	3 cut(s)	560, 629, 680
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	2 cut(s)	417, 586
MseI	TTAA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	2 cut(s)	281, 629
MspR9I	CCNGG	4 cut(s)	313, 629, 630, 643
MvaI	CCWGG	2 cut(s)	313, 643
MwoI	GCNNNNNNNGC	4 cut(s)	127, 236, 503, 675
NciI	CCSGG	2 cut(s)	629, 630
NcoI	CCATGG	1 cut(s)	541
NlaIII	CATG	2 cut(s)	526, 545
NlaIV	GGNNCC	1 cut(s)	538
NmuCI	GTSAC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	2 cut(s)	477, 612
PflMI	CCANNNNNTGG	1 cut(s)	315
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	536, 550
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	311, 641
PspEI	GGTNACC	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	2 cut(s)	311, 641
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	4 cut(s)	170, 283, 645, 668
RsaI	GTAC	3 cut(s)	161, 212, 335
RsaNI	GTAC	3 cut(s)	160, 211, 334
SalI	GTCGAC	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	535, 549
Sau96I	GGNCC	4 cut(s)	170, 283, 645, 668
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	4 cut(s)	313, 629, 630, 643
SduI	GDGCHC	3 cut(s)	560, 629, 680
SetI	ASST	8 cut(s)	92, 132, 153, 263, 314, 345, 350, 483
SexAI	ACCWGGT	1 cut(s)	311
SfaNI	GCATC	1 cut(s)	521
SgrDI	CGTCGACG	1 cut(s)	509
SinI	GGWCC	2 cut(s)	170, 283
SmaI	CCCGGG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	2 cut(s)	534, 683
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	4 cut(s)	311, 627, 628, 641
StyI	CCWWGG	2 cut(s)	105, 541
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	510
TasI	AATT	1 cut(s)	387
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	537
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	81, 130, 629
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	9, 244, 539
TspGWI	ACGGA	1 cut(s)	292
TspMI	CCCGGG	1 cut(s)	628
TspRI	CASTG	3 cut(s)	81, 130, 629
Van91I	CCANNNNNTGG	1 cut(s)	315
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	170, 283
XapI	RAATTY	1 cut(s)	387
XmaI	CCCGGG	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.