Rorug07G0320200

Phosphate-induced protein 1 conserved region

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
32881146 .. 32881730
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0320200.1

Sequence Viewer

Length: 468 bp
ATGGGTGTCATGTCTAGACTTAACCTTCCCTATACTGAGGTATACTCGAATGGTGTAAACCGTGTGGTCGGTCATCTCAATGGTGGCAAAGGTGGGGATGATTCCGAGGTGGCAAAGGATCGCATCCCTCCTCCAGTAGTCAAGAGTGCCTTTGGTGTTAAAGTGATACTGCCATCGAGTTTGGCTGATAAGAAAGGGAAGAAGAGGAAAGCTGCTTCTACCTCGAGGCCAAGTGGAGCTACTAAGCGAGAGGTTACAGATGATGCCTCACCTGCTTTCCTTAGGTGGAGTTCTCGCGTTGCCAACATGAATTTTTCTAACCGTAAACTGTCGTCTAAGGGCGCTGTTTATGTCGATCTTAATGACGGGCCAAGCGATGACAGCGAGGGTAGCCCCCTTGGTGATAATGTCAGTACACATGAGGAGAATGAGTCTGATACTTATGAGGGGGAGATCGACCTGCAATGA

Protein Analysis

155

Amino Acids

16.58

Weight (kDa)

6.13

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 280
AbsI CCTCGAGG 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 280
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 297
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 1 cut(s) 415
AluBI AGCT 2 cut(s) 212, 239
AluI AGCT 2 cut(s) 212, 239
AlwI GGATC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 2 cut(s) 227, 368
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 261, 413
AvaI CYCGRG 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 281
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 181
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 280
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 368
BmsI GCATC 2 cut(s) 132, 253
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 105, 397
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bse1I ACTGG 1 cut(s) 134
Bse21I CCTNAGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 105, 397
BseGI GGATG 2 cut(s) 103, 123
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 120, 437
BseXI GCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 2 cut(s) 229, 370
BsiHKCI CYCGRG 1 cut(s) 223
BsnI GGCC 2 cut(s) 229, 370
BsoBI CYCGRG 1 cut(s) 223
Bsp143I GATC 3 cut(s) 118, 355, 453
BspANI GGCC 2 cut(s) 229, 370
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 105, 397
BssMI GATC 3 cut(s) 118, 355, 453
BssNAI GTATAC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 397
Bst1107I GTATAC 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 62, 323, 330
Bst6I CTCTTC 1 cut(s) 197
BstDEI CTNAG 4 cut(s) 36, 243, 281, 336
BstF5I GGATG 2 cut(s) 103, 123
BstFNI CGCG 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 3 cut(s) 121, 358, 456
BstMBI GATC 3 cut(s) 118, 355, 453
BstMWI GCNNNNNNNGC 3 cut(s) 272, 381, 390
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 281
BsuRI GGCC 2 cut(s) 229, 370
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 103, 123
BveI ACCTGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 414
CviAII CATG 3 cut(s) 10, 307, 419
CviJI RGCY 6 cut(s) 185, 212, 229, 239, 370, 393
CviKI_1 RGCY 6 cut(s) 185, 212, 229, 239, 370, 393
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 4 cut(s) 36, 243, 281, 336
DpnI GATC 3 cut(s) 120, 357, 455
DpnII GATC 3 cut(s) 118, 355, 453
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 397
Eco81I CCTNAGG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 3 cut(s) 13, 310, 422
FaiI YATR 7 cut(s) 11, 33, 43, 308, 351, 420, 444
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 3 cut(s) 9, 306, 418
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 2 cut(s) 110, 110
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 2 cut(s) 229, 370
HhaI GCGC 1 cut(s) 344
Hin1II CATG 3 cut(s) 13, 310, 422
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 2 cut(s) 101, 431
HphI GGTGA 2 cut(s) 261, 413
Hpy166II GTNNAC 4 cut(s) 43, 58, 326, 416
Hpy188I TCNGA 2 cut(s) 106, 436
Hpy188III TCNNGA 2 cut(s) 15, 142
Hpy8I GTNNAC 4 cut(s) 43, 58, 326, 416
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 62, 323, 330
HpyCH4V TGCA 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 381, 390
HpyF3I CTNAG 4 cut(s) 36, 243, 281, 336
Hsp92II CATG 3 cut(s) 13, 310, 422
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 3 cut(s) 118, 355, 453
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 2 cut(s) 147, 285
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 132, 253
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 120, 357, 455
MboI GATC 3 cut(s) 118, 355, 453
MboII GAAGA 2 cut(s) 211, 214
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 440
MseI TTAA 3 cut(s) 21, 159, 360
MslI CAYNNNNRTG 1 cut(s) 78
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 272, 381, 390
NdeII GATC 3 cut(s) 118, 355, 453
NlaIII CATG 3 cut(s) 13, 310, 422
PaeR7I CTCGAG 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 368
PspXI VCTCGAGB 1 cut(s) 223
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 3 cut(s) 21, 159, 360
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 3 cut(s) 118, 355, 453
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 440
SfaNI GCATC 2 cut(s) 132, 253
Sfr274I CTCGAG 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 62, 323, 330
TaqI TCGA 5 cut(s) 47, 176, 224, 354, 456
TaqII GACCGA 1 cut(s) 59
TasI AATT 1 cut(s) 310
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 21, 159, 360
Tru9I TTAA 3 cut(s) 21, 159, 360
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 323
XapI RAATTY 1 cut(s) 310
XbaI TCTAGA 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.