Rh7BG446400

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000422
Physical Location & Seq
Reverse (-)
52028493 .. 52029452
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG446400.1

Sequence Viewer

Length: 960 bp
ATGGCTTCTTCTGCTTTCATGCAATTACTCTCCTTTGTCCTAGTGCTCTGTTTGGTCCATTTTTGCTCAGCAGGTAGAAGCCTTGCTGAAACGTCAGACCAAACCCAGCAGCCTATACTATTCCAATATCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGAAAATTCAAGCCCTCCCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTACTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATTGAGAAATACTACCACCTCTCCAATGCCAAGAAAACCTCATCTCTTTCCCTCTCATTGGGTAACCAAATCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGAAAACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTCTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCCAGCAAATGTGGTACACACGGGTCTTCAAAAAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGCCCGGGTCAATGTTCTTGGCCATTCCACCAACCTATCTATGGACCACAGACCACACCTTTGGTGGCACCCAACAACGATGTCGGTGTGGACGGTATGATCATCAATCTAGCTAGTCTTTTGGCTGGGACCGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCATCAGCTTGTCCTGGAGTTTATGGTAAAGGAGCTTATCCTGGCTACGCTGGAGACCTCTTGGTTGATGCTACGACTGGTGCCAGCTACAACGCCAATGGTTTGAATGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCTTCAACCTCAACTTGTTCTACTCTTGTTTGA

Protein Analysis

319

Amino Acids

33.87

Weight (kDa)

8.8

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 42 - 318 4.6e-124 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 2 cut(s) 661, 866
AccII CGCG 1 cut(s) 204
AcoI YGGCCR 2 cut(s) 433, 614
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 2 cut(s) 511, 905
AfiI CCNNNNNNNGG 3 cut(s) 346, 598, 635
AgsI TTSAA 4 cut(s) 190, 525, 892, 933
AjnI CCWGG 3 cut(s) 756, 799, 826
AluBI AGCT 7 cut(s) 372, 531, 552, 707, 794, 821, 873
AluI AGCT 7 cut(s) 372, 531, 552, 707, 794, 821, 873
Alw21I GWGCWC 2 cut(s) 48, 554
Alw26I GTCTC 2 cut(s) 581, 834
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 3 cut(s) 136, 433, 614
ApeKI GCWGC 3 cut(s) 109, 422, 785
ApoI RAATTY 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
AspLEI GCGC 2 cut(s) 204, 206
AspS9I GGNCC 5 cut(s) 55, 137, 638, 723, 761
AsuC2I CCSGG 2 cut(s) 599, 600
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 4 cut(s) 55, 638, 723, 761
BalI TGGCCA 2 cut(s) 435, 616
BanI GGYRCC 2 cut(s) 661, 866
BanII GRGCYC 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 2 cut(s) 48, 554
BbvI GCAGC 3 cut(s) 121, 434, 772
BccI CCATC 5 cut(s) 170, 256, 271, 455, 479
BciT130I CCWGG 3 cut(s) 758, 801, 828
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 2 cut(s) 599, 600
BcoDI GTCTC 2 cut(s) 581, 834
BfaI CTAG 3 cut(s) 41, 704, 708
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 110, 423, 786
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 111, 424, 787
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 5 cut(s) 599, 600, 758, 801, 828
Bme18I GGWCC 4 cut(s) 55, 638, 723, 761
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 5 cut(s) 55, 137, 638, 723, 761
BmiI GGNNCC 6 cut(s) 663, 724, 762, 763, 774, 868
BmrFI CCNGG 5 cut(s) 599, 600, 758, 801, 828
BmsI GCATC 2 cut(s) 797, 844
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 4 cut(s) 359, 391, 361, 393
BpmI CTGGAG 3 cut(s) 481, 822, 858
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 599, 600
BsaI GGTCTC 2 cut(s) 581, 834
BsaJI CCNNGG 3 cut(s) 426, 598, 757
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 293, 323
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 598, 635
Bse1I ACTGG 2 cut(s) 154, 868
BseBI CCWGG 3 cut(s) 758, 801, 828
BseDI CCNNGG 3 cut(s) 426, 598, 757
BseLI CCNNNNNNNGG 3 cut(s) 346, 598, 635
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 154, 868
BsePI GCGCGC 1 cut(s) 202
BseXI GCAGC 3 cut(s) 121, 434, 772
BseYI CCCAGC 3 cut(s) 105, 198, 719
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 3 cut(s) 138, 435, 616
BshNI GGYRCC 2 cut(s) 661, 866
BsiHKAI GWGCWC 2 cut(s) 48, 554
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 1 cut(s) 599
BslFI GGGAC 3 cut(s) 373, 736, 747
BslI CCNNNNNNNGG 3 cut(s) 346, 598, 635
BsmAI GTCTC 2 cut(s) 581, 834
BsmFI GGGAC 3 cut(s) 373, 736, 747
BsnI GGCC 3 cut(s) 138, 435, 616
Bso31I GGTCTC 2 cut(s) 581, 834
BsoBI CYCGRG 1 cut(s) 598
Bsp1286I GDGCHC 2 cut(s) 48, 554
Bsp143I GATC 2 cut(s) 171, 693
Bsp1720I GCTNAGC 1 cut(s) 67
BspANI GGCC 3 cut(s) 138, 435, 616
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 6 cut(s) 663, 724, 762, 763, 774, 868
BspMI ACCTGC 1 cut(s) 62
BspT107I GGYRCC 2 cut(s) 661, 866
BspTNI GGTCTC 2 cut(s) 581, 834
BsrI ACTGG 2 cut(s) 154, 868
BssECI CCNNGG 3 cut(s) 426, 598, 757
BssHII GCGCGC 1 cut(s) 202
BssMI GATC 2 cut(s) 171, 693
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 3 cut(s) 758, 801, 828
Bst4CI ACNGT 3 cut(s) 417, 689, 727
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 204, 871
BstDEI CTNAG 1 cut(s) 67
BstEII GGTNACC 1 cut(s) 350
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 2 cut(s) 204, 206
BstKTI GATC 2 cut(s) 174, 696
BstMAI GTCTC 2 cut(s) 581, 834
BstMBI GATC 2 cut(s) 171, 693
BstMWI GCNNNNNNNGC 3 cut(s) 11, 199, 791
BstNI CCWGG 3 cut(s) 758, 801, 828
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 5 cut(s) 597, 598, 756, 799, 826
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 121, 434, 772
BstV2I GAAGAC 1 cut(s) 513
BstXI CCANNNNNNTGG 1 cut(s) 655
BsuRI GGCC 3 cut(s) 138, 435, 616
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 204, 871
CfoI GCGC 2 cut(s) 204, 206
Cfr13I GGNCC 5 cut(s) 55, 137, 638, 723, 761
Cfr9I CCCGGG 1 cut(s) 598
Csp6I GTAC 2 cut(s) 510, 904
CviAII CATG 2 cut(s) 19, 276
CviQI GTAC 2 cut(s) 510, 904
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 173, 695
DpnII GATC 2 cut(s) 171, 693
EaeI YGGCCR 2 cut(s) 433, 614
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 554
Eco31I GGTCTC 2 cut(s) 581, 834
Eco47I GGWCC 4 cut(s) 55, 638, 723, 761
Eco53kI GAGCTC 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 598
Eco91I GGTNACC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 761
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 3 cut(s) 756, 799, 826
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 22, 279
FaiI YATR 7 cut(s) 20, 116, 180, 277, 636, 692, 810
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 3 cut(s) 373, 736, 747
FatI CATG 2 cut(s) 18, 275
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 110, 423, 786
FriOI GRGCYC 1 cut(s) 554
Fsp4HI GCNGC 3 cut(s) 110, 423, 786
FspBI CTAG 3 cut(s) 41, 704, 708
GlaI GCGC 2 cut(s) 203, 205
GluI GCNGC 3 cut(s) 110, 423, 786
GsaI CCCAGC 3 cut(s) 109, 202, 723
GsuI CTGGAG 3 cut(s) 481, 822, 858
HaeIII GGCC 3 cut(s) 138, 435, 616
HapII CCGG 1 cut(s) 599
HhaI GCGC 2 cut(s) 204, 206
Hin1II CATG 2 cut(s) 22, 279
Hin6I GCGC 2 cut(s) 202, 204
HinP1I GCGC 2 cut(s) 202, 204
HpaII CCGG 1 cut(s) 599
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 2 cut(s) 512, 685
Hpy188I TCNGA 6 cut(s) 97, 217, 472, 542, 578, 586
Hpy188III TCNNGA 1 cut(s) 460
Hpy8I GTNNAC 2 cut(s) 512, 685
HpyAV CCTTC 1 cut(s) 939
HpyCH4III ACNGT 3 cut(s) 417, 689, 727
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 22, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 199, 791
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 2 cut(s) 22, 279
HspAI GCGC 2 cut(s) 202, 204
KflI GGGWCCC 1 cut(s) 761
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 2 cut(s) 171, 693
LmnI GCTCC 4 cut(s) 500, 557, 778, 818
Lsp1109I GCAGC 3 cut(s) 121, 434, 772
LweI GCATC 2 cut(s) 797, 844
MaeI CTAG 3 cut(s) 41, 704, 708
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 350, 727
MalI GATC 2 cut(s) 173, 695
MboI GATC 2 cut(s) 171, 693
MboII GAAGA 3 cut(s) 134, 513, 910
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 48, 554
MlsI TGGCCA 2 cut(s) 435, 616
MluCI AATT 5 cut(s) 23, 166, 185, 207, 480
MluNI TGGCCA 2 cut(s) 435, 616
MmeI TCCRAC 2 cut(s) 379, 556
Mox20I TGGCCA 2 cut(s) 435, 616
MscI TGGCCA 2 cut(s) 435, 616
Msp20I TGGCCA 2 cut(s) 435, 616
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 5 cut(s) 599, 600, 758, 801, 828
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 3 cut(s) 758, 801, 828
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 11, 199, 791
NciI CCSGG 2 cut(s) 599, 600
NdeII GATC 2 cut(s) 171, 693
NlaIII CATG 2 cut(s) 22, 279
NlaIV GGNNCC 6 cut(s) 663, 724, 762, 763, 774, 868
NmuCI GTSAC 1 cut(s) 727
PauI GCGCGC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 3 cut(s) 111, 424, 787
PpuMI RGGWCCY 1 cut(s) 761
Psp124BI GAGCTC 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 3 cut(s) 756, 799, 826
PspEI GGTNACC 1 cut(s) 350
PspFI CCCAGC 3 cut(s) 105, 198, 719
PspGI CCWGG 3 cut(s) 756, 799, 826
PspN4I GGNNCC 6 cut(s) 663, 724, 762, 763, 774, 868
PspPI GGNCC 5 cut(s) 55, 137, 638, 723, 761
PspPPI RGGWCCY 1 cut(s) 761
PteI GCGCGC 1 cut(s) 202
RsaI GTAC 2 cut(s) 511, 905
RsaNI GTAC 2 cut(s) 510, 904
SacI GAGCTC 1 cut(s) 554
SatI GCNGC 3 cut(s) 110, 423, 786
Sau3AI GATC 2 cut(s) 171, 693
Sau96I GGNCC 5 cut(s) 55, 137, 638, 723, 761
ScaI AGTACT 1 cut(s) 905
ScrFI CCNGG 5 cut(s) 599, 600, 758, 801, 828
SduI GDGCHC 2 cut(s) 48, 554
SfaNI GCATC 2 cut(s) 797, 844
SinI GGWCC 4 cut(s) 55, 638, 723, 761
SmaI CCCGGG 1 cut(s) 600
Sse9I AATT 5 cut(s) 23, 166, 185, 207, 480
SspMI CTAG 3 cut(s) 41, 704, 708
SstI GAGCTC 1 cut(s) 554
StyD4I CCNGG 5 cut(s) 597, 598, 756, 799, 826
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 3 cut(s) 417, 689, 727
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 363
TasI AATT 5 cut(s) 23, 166, 185, 207, 480
TatI WGTACW 1 cut(s) 903
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 3 cut(s) 109, 422, 785
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 3 cut(s) 7, 211, 526
TspMI CCCGGG 1 cut(s) 598
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 4 cut(s) 55, 638, 723, 761
XapI RAATTY 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 3 cut(s) 131, 632, 655
XmaI CCCGGG 1 cut(s) 598
XspI CTAG 3 cut(s) 41, 704, 708
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.