Rroxscaffold_3G00222060

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000422
Physical Location & Seq
Forward (+)
5072125 .. 5073090
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222060.1

Sequence Viewer

Length: 966 bp
ATGGCTGCTTTTGCTTCCTCTTATCTATTTCTACAACTAGTCCTCCTGCTGATCTCCTTGTTCTATTTTGGCTCAGCAGCTAGGAGCCTTGCTGAGACCTCAGACCAAACCCAGCAGCCTATACTATTCCAATACCACAATGGCCCTCTTCTTACTGGCAAAATCTCCATCAATTTGATCTGGTACGGAAAATTCAAGCCTTCCCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTACAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAAAAATACTACCACCTCTCCAATGCCAAGAAAACCTCGTCTCTTTCCCTCTCATTGGGTACCCAAATCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGAACACACATCAAACAGTTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTCTGCTCCAGCAAATGTGGTACACACGGGTCTTCAAAGAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGTCCGGGTCAATGTGCTTGGCCATTCCATCAGCCAATTTACGGACCACAATCTCCACCTTTGGTTGCACCCAACAATGATGTGGGTTTGGACGGTATGATCATCAATCTAGCTGGCCTTTTGGCGGGGACGGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGCCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCCGGTGTCTATGGGAAAGGAGCATATCCTGGTTATGCTGGAGACCTCTTGGTTGATGCTACAACCGGTGCTAGCTACAATGCCAATGGTGTGAATGGGAAGAAGTATTTGCTGCCTGCTTTGTTTGACCCTTCAACCTCAACTTGTTCCACTCTAGTTTGA

Protein Analysis

321

Amino Acids

34.03

Weight (kDa)

8.77

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 44 - 320 6.9e-124 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 725
AcoI YGGCCR 2 cut(s) 439, 620
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 3 cut(s) 185, 358, 517
AfiI CCNNNNNNNGG 5 cut(s) 352, 604, 641, 724, 775
AgeI ACCGGT 1 cut(s) 869
AgsI TTSAA 3 cut(s) 196, 531, 939
AhdI GACNNNNNGTC 1 cut(s) 600
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 2 cut(s) 762, 832
AluBI AGCT 6 cut(s) 80, 378, 537, 558, 713, 879
AluI AGCT 6 cut(s) 80, 378, 537, 558, 713, 879
Alw21I GWGCWC 2 cut(s) 539, 560
Alw26I GTCTC 4 cut(s) 89, 342, 587, 840
AoxI GGCC 5 cut(s) 142, 439, 620, 715, 766
ApaI GGGCCC 1 cut(s) 770
ApeKI GCWGC 6 cut(s) 5, 77, 115, 428, 791, 916
ApoI RAATTY 1 cut(s) 191
AsiGI ACCGGT 1 cut(s) 869
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 2 cut(s) 210, 212
AspS9I GGNCC 4 cut(s) 143, 644, 766, 767
AsuC2I CCSGG 2 cut(s) 606, 807
AsuHPI GGTGA 2 cut(s) 223, 745
AsuNHI GCTAGC 1 cut(s) 875
AvaII GGWCC 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 770
BalI TGGCCA 2 cut(s) 441, 622
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 3 cut(s) 539, 560, 770
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 2 cut(s) 539, 560
BbvI GCAGC 5 cut(s) 89, 127, 440, 778, 903
BccI CCATC 6 cut(s) 176, 262, 277, 461, 485, 636
BciT130I CCWGG 2 cut(s) 764, 834
BclI TGATCA 1 cut(s) 699
BcnI CCSGG 2 cut(s) 606, 807
BcoDI GTCTC 4 cut(s) 89, 342, 587, 840
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 5 cut(s) 38, 81, 710, 876, 959
BisI GCNGC 6 cut(s) 6, 78, 116, 429, 792, 917
BlpI GCTNAGC 1 cut(s) 73
BlsI GCNGC 6 cut(s) 7, 79, 117, 430, 793, 918
Bme1390I CCNGG 4 cut(s) 606, 764, 807, 834
Bme18I GGWCC 1 cut(s) 644
BmeRI GACNNNNNGTC 1 cut(s) 600
BmgT120I GGNCC 4 cut(s) 143, 644, 766, 767
BmiI GGNNCC 5 cut(s) 86, 358, 768, 769, 780
BmrFI CCNGG 4 cut(s) 606, 764, 807, 834
BmsI GCATC 1 cut(s) 850
BmtI GCTAGC 1 cut(s) 879
BpiI GAAGAC 1 cut(s) 519
BplI GAGNNNNNCTC 4 cut(s) 365, 397, 367, 399
BpmI CTGGAG 2 cut(s) 487, 864
Bpu1102I GCTNAGC 1 cut(s) 73
BpuMI CCSGG 2 cut(s) 606, 807
BsaI GGTCTC 3 cut(s) 89, 587, 840
BsaJI CCNNGG 2 cut(s) 432, 763
BsaWI WCCGGW 1 cut(s) 869
BsaXI ACNNNNNCTCC 6 cut(s) 27, 57, 235, 265, 299, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 352, 604, 641, 724, 775
Bse118I RCCGGY 1 cut(s) 869
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 2 cut(s) 764, 834
BseDI CCNNGG 2 cut(s) 432, 763
BseLI CCNNNNNNNGG 5 cut(s) 352, 604, 641, 724, 775
BseMII CTCAG 3 cut(s) 84, 87, 114
BseNI ACTGG 1 cut(s) 160
BsePI GCGCGC 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 770
BseXI GCAGC 5 cut(s) 89, 127, 440, 778, 903
BseYI CCCAGC 2 cut(s) 111, 204
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 5 cut(s) 144, 441, 622, 717, 768
BshNI GGYRCC 1 cut(s) 356
BshTI ACCGGT 1 cut(s) 869
BsiHKAI GWGCWC 2 cut(s) 539, 560
BsiSI CCGG 3 cut(s) 605, 807, 870
BslFI GGGAC 3 cut(s) 379, 742, 789
BslI CCNNNNNNNGG 5 cut(s) 352, 604, 641, 724, 775
BsmAI GTCTC 4 cut(s) 89, 342, 587, 840
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 3 cut(s) 379, 742, 789
BsnI GGCC 5 cut(s) 144, 441, 622, 717, 768
Bso31I GGTCTC 3 cut(s) 89, 587, 840
Bsp120I GGGCCC 1 cut(s) 766
Bsp1286I GDGCHC 3 cut(s) 539, 560, 770
Bsp143I GATC 3 cut(s) 51, 177, 699
Bsp1720I GCTNAGC 1 cut(s) 73
BspACI CCGC 1 cut(s) 725
BspANI GGCC 5 cut(s) 144, 441, 622, 717, 768
BspCNI CTCAG 3 cut(s) 85, 86, 113
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 5 cut(s) 86, 358, 768, 769, 780
BspOI GCTAGC 1 cut(s) 879
BspT107I GGYRCC 1 cut(s) 356
BspTNI GGTCTC 3 cut(s) 89, 587, 840
BsrFI RCCGGY 1 cut(s) 869
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 869
BssECI CCNNGG 2 cut(s) 432, 763
BssHII GCGCGC 1 cut(s) 208
BssMI GATC 3 cut(s) 51, 177, 699
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 764, 834
Bst4CI ACNGT 3 cut(s) 423, 695, 733
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 210, 715, 877, 921
BstDEI CTNAG 3 cut(s) 73, 93, 100
BstEII GGTNACC 1 cut(s) 733
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 2 cut(s) 210, 212
BstKTI GATC 3 cut(s) 54, 180, 702
BstMAI GTCTC 4 cut(s) 89, 342, 587, 840
BstMBI GATC 3 cut(s) 51, 177, 699
BstMWI GCNNNNNNNGC 3 cut(s) 11, 205, 797
BstNI CCWGG 2 cut(s) 764, 834
BstPI GGTNACC 1 cut(s) 733
BstSCI CCNGG 4 cut(s) 604, 762, 805, 832
BstSLI GKGCMC 1 cut(s) 770
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 5 cut(s) 89, 127, 440, 778, 903
BstV2I GAAGAC 1 cut(s) 519
BsuRI GGCC 5 cut(s) 144, 441, 622, 717, 768
Cac8I GCNNGC 4 cut(s) 210, 715, 877, 921
CfoI GCGC 2 cut(s) 210, 212
Cfr10I RCCGGY 1 cut(s) 869
Cfr13I GGNCC 4 cut(s) 143, 644, 766, 767
Csp6I GTAC 3 cut(s) 184, 357, 516
CspAI ACCGGT 1 cut(s) 869
CviAII CATG 1 cut(s) 282
CviQI GTAC 3 cut(s) 184, 357, 516
DdeI CTNAG 3 cut(s) 73, 93, 100
DpnI GATC 3 cut(s) 53, 179, 701
DpnII GATC 3 cut(s) 51, 177, 699
DriI GACNNNNNGTC 1 cut(s) 600
EaeI YGGCCR 2 cut(s) 439, 620
Eam1104I CTCTTC 1 cut(s) 153
Eam1105I GACNNNNNGTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 153
Ecl136II GAGCTC 2 cut(s) 537, 558
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 3 cut(s) 539, 560, 770
Eco31I GGTCTC 3 cut(s) 89, 587, 840
Eco47I GGWCC 1 cut(s) 644
Eco53kI GAGCTC 2 cut(s) 537, 558
Eco91I GGTNACC 1 cut(s) 733
EcoICRI GAGCTC 2 cut(s) 537, 558
EcoO109I RGGNCCY 2 cut(s) 766, 767
EcoO65I GGTNACC 1 cut(s) 733
EcoRII CCWGG 2 cut(s) 762, 832
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 3 cut(s) 539, 560, 770
ErhI CCWWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 1 cut(s) 285
FaiI YATR 7 cut(s) 122, 283, 296, 698, 816, 829, 840
FaqI GGGAC 3 cut(s) 379, 742, 789
FatI CATG 1 cut(s) 281
FauI CCCGC 1 cut(s) 718
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 6 cut(s) 6, 78, 116, 429, 792, 917
FriOI GRGCYC 3 cut(s) 539, 560, 770
Fsp4HI GCNGC 6 cut(s) 6, 78, 116, 429, 792, 917
FspBI CTAG 5 cut(s) 38, 81, 710, 876, 959
GlaI GCGC 2 cut(s) 209, 211
GluI GCNGC 6 cut(s) 6, 78, 116, 429, 792, 917
GsaI CCCAGC 2 cut(s) 115, 208
GsuI CTGGAG 2 cut(s) 487, 864
HaeIII GGCC 5 cut(s) 144, 441, 622, 717, 768
HapII CCGG 3 cut(s) 605, 807, 870
HhaI GCGC 2 cut(s) 210, 212
Hin1II CATG 1 cut(s) 285
Hin6I GCGC 2 cut(s) 208, 210
HinP1I GCGC 2 cut(s) 208, 210
HpaII CCGG 3 cut(s) 605, 807, 870
HphI GGTGA 2 cut(s) 223, 745
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 6 cut(s) 103, 223, 478, 548, 584, 592
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 2 cut(s) 210, 945
HpyCH4III ACNGT 3 cut(s) 423, 695, 733
HpyCH4V TGCA 1 cut(s) 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 205, 797
HpyF3I CTNAG 3 cut(s) 73, 93, 100
Hsp92II CATG 1 cut(s) 285
HspAI GCGC 2 cut(s) 208, 210
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 3 cut(s) 51, 177, 699
LmnI GCTCC 5 cut(s) 84, 506, 563, 784, 824
Lsp1109I GCAGC 5 cut(s) 89, 127, 440, 778, 903
LweI GCATC 1 cut(s) 850
MaeI CTAG 5 cut(s) 38, 81, 710, 876, 959
MaeIII GTNAC 1 cut(s) 733
MalI GATC 3 cut(s) 53, 179, 701
MboI GATC 3 cut(s) 51, 177, 699
MboII GAAGA 4 cut(s) 140, 240, 519, 916
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 3 cut(s) 539, 560, 770
MlsI TGGCCA 2 cut(s) 441, 622
MluCI AATT 5 cut(s) 172, 191, 213, 486, 636
MluNI TGGCCA 2 cut(s) 441, 622
MmeI TCCRAC 2 cut(s) 385, 562
Mox20I TGGCCA 2 cut(s) 441, 622
MscI TGGCCA 2 cut(s) 441, 622
Msp20I TGGCCA 2 cut(s) 441, 622
MspI CCGG 3 cut(s) 605, 807, 870
MspR9I CCNGG 4 cut(s) 606, 764, 807, 834
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 2 cut(s) 764, 834
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 11, 205, 797
NciI CCSGG 2 cut(s) 606, 807
NdeII GATC 3 cut(s) 51, 177, 699
NheI GCTAGC 1 cut(s) 875
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 5 cut(s) 86, 358, 768, 769, 780
NmuCI GTSAC 1 cut(s) 733
PauI GCGCGC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PinAI ACCGGT 1 cut(s) 869
PkrI GCNGC 6 cut(s) 7, 79, 117, 430, 793, 918
Psp124BI GAGCTC 2 cut(s) 539, 560
Psp6I CCWGG 2 cut(s) 762, 832
PspEI GGTNACC 1 cut(s) 733
PspFI CCCAGC 2 cut(s) 111, 204
PspGI CCWGG 2 cut(s) 762, 832
PspN4I GGNNCC 5 cut(s) 86, 358, 768, 769, 780
PspOMI GGGCCC 1 cut(s) 766
PspPI GGNCC 4 cut(s) 143, 644, 766, 767
PteI GCGCGC 1 cut(s) 208
RsaI GTAC 3 cut(s) 185, 358, 517
RsaNI GTAC 3 cut(s) 184, 357, 516
SacI GAGCTC 2 cut(s) 539, 560
SatI GCNGC 6 cut(s) 6, 78, 116, 429, 792, 917
Sau3AI GATC 3 cut(s) 51, 177, 699
Sau96I GGNCC 4 cut(s) 143, 644, 766, 767
ScrFI CCNGG 4 cut(s) 606, 764, 807, 834
SduI GDGCHC 3 cut(s) 539, 560, 770
SfaNI GCATC 1 cut(s) 850
SinI GGWCC 1 cut(s) 644
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 5 cut(s) 172, 191, 213, 486, 636
SsiI CCGC 1 cut(s) 725
SspMI CTAG 5 cut(s) 38, 81, 710, 876, 959
SstI GAGCTC 2 cut(s) 539, 560
StyD4I CCNGG 4 cut(s) 604, 762, 805, 832
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 423, 695, 733
TaqI TCGA 1 cut(s) 369
TasI AATT 5 cut(s) 172, 191, 213, 486, 636
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 6 cut(s) 5, 77, 115, 428, 791, 916
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 2 cut(s) 217, 532
TspGWI ACGGA 2 cut(s) 201, 657
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 2 cut(s) 137, 679
XspI CTAG 5 cut(s) 38, 81, 710, 876, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.