Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000422

Physical Location & Seq

Genomic Coordinates Forward (+)

23431505 .. 23431774

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1185900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTCATTAACCTGGCTAGCCTTCTGGCCGGGACAGCCACCAACCCATTCGGAAATGGATACTTCCAGGGCCCGGCCGAGGCACCCCTAGAAGCCTCCTCGGCCTGCCCTGGGGTCTACGGGAAGGGAGCTTATCCTGGTTATGCCGGGGACTTGCTGCAGGACCGCACCACCGGTGCCAGCTACAATGCCAATGGTGCTAATGGAAGGAAGTACTTGCTTCCTGCACTATATAATCCTGCAACTTCATCTTGTTTTACTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0012505 GO:0014070 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

90

Amino Acids

9.08

Weight (kDa)

5.97

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	1 - 88	5.5e-42	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35140 AT4G08950
fragaria_vesca	FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica	MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica	Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis	pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis	RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata	RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora	Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa	Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha	Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana	Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	82, 176
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	166
AcoI	YGGCCR	2 cut(s)	27, 75
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	73, 79, 111
AgeI	ACCGGT	1 cut(s)	173
AjnI	CCWGG	4 cut(s)	12, 66, 109, 136
AluBI	AGCT	2 cut(s)	131, 183
AluI	AGCT	2 cut(s)	131, 183
AoxI	GGCC	4 cut(s)	27, 70, 75, 102
ApaI	GGGCCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	157
AsiGI	ACCGGT	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	70, 71, 163
AsuC2I	CCSGG	3 cut(s)	31, 74, 148
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	74
BanI	GGYRCC	2 cut(s)	82, 176
BanII	GRGCYC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	144
BciT130I	CCWGG	4 cut(s)	14, 68, 111, 138
BciVI	GTATCC	1 cut(s)	53
BcnI	CCSGG	3 cut(s)	31, 74, 148
BfaI	CTAG	2 cut(s)	18, 89
BfmI	CTRYAG	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	7 cut(s)	14, 31, 68, 74, 111, 138, 148
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	70, 71, 163
BmiI	GGNNCC	3 cut(s)	72, 84, 178
BmrFI	CCNGG	7 cut(s)	14, 31, 68, 74, 111, 138, 148
BmtI	GCTAGC	1 cut(s)	21
BpuMI	CCSGG	3 cut(s)	31, 74, 148
BsaJI	CCNNGG	6 cut(s)	67, 78, 99, 109, 110, 147
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 79, 111
Bse118I	RCCGGY	1 cut(s)	173
BseBI	CCWGG	4 cut(s)	14, 68, 111, 138
BseDI	CCNNGG	6 cut(s)	67, 78, 99, 109, 110, 147
BseLI	CCNNNNNNNGG	3 cut(s)	73, 79, 111
BseRI	GAGGAG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	29, 72, 77, 104
BshNI	GGYRCC	2 cut(s)	82, 176
BshTI	ACCGGT	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	4 cut(s)	30, 74, 147, 174
BslFI	GGGAC	2 cut(s)	46, 164
BslI	CCNNNNNNNGG	3 cut(s)	73, 79, 111
BsmFI	GGGAC	2 cut(s)	46, 164
BsnI	GGCC	4 cut(s)	29, 72, 77, 104
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	74
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	4 cut(s)	29, 72, 77, 104
BspLI	GGNNCC	3 cut(s)	72, 84, 178
BspMAI	CTGCAG	1 cut(s)	162
BspOI	GCTAGC	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	82, 176
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	6 cut(s)	67, 78, 99, 109, 110, 147
Bst2UI	CCWGG	4 cut(s)	14, 68, 111, 138
BstC8I	GCNNGC	3 cut(s)	19, 106, 181
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 101, 197
BstNI	CCWGG	4 cut(s)	14, 68, 111, 138
BstSCI	CCNGG	7 cut(s)	12, 29, 66, 72, 109, 136, 146
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	144
BstZI	CGGCCG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	4 cut(s)	29, 72, 77, 104
Cac8I	GCNNGC	3 cut(s)	19, 106, 181
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	70, 71, 163
Csp6I	GTAC	1 cut(s)	214
CspAI	ACCGGT	1 cut(s)	173
CviQI	GTAC	1 cut(s)	214
EaeI	YGGCCR	2 cut(s)	27, 75
EagI	CGGCCG	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	4 cut(s)	12, 66, 109, 136
EcoT38I	GRGCYC	1 cut(s)	74
FaiI	YATR	3 cut(s)	144, 232, 234
FaqI	GGGAC	2 cut(s)	46, 164
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	2 cut(s)	18, 89
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	4 cut(s)	29, 72, 77, 104
HapII	CCGG	4 cut(s)	30, 74, 147, 174
HpaII	CCGG	4 cut(s)	30, 74, 147, 174
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	32, 118, 201
HpyCH4V	TGCA	3 cut(s)	160, 227, 242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 101, 197
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	18, 89
MhlI	GDGCHC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	73, 106, 109
MseI	TTAA	1 cut(s)	9
MspI	CCGG	4 cut(s)	30, 74, 147, 174
MspR9I	CCNGG	7 cut(s)	14, 31, 68, 74, 111, 138, 148
MvaI	CCWGG	4 cut(s)	14, 68, 111, 138
MwoI	GCNNNNNNNGC	3 cut(s)	35, 101, 197
NciI	CCSGG	3 cut(s)	31, 74, 148
NheI	GCTAGC	1 cut(s)	17
NlaIV	GGNNCC	3 cut(s)	72, 84, 178
NmeAIII	GCCGAG	2 cut(s)	80, 103
PasI	CCCWGGG	1 cut(s)	110
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	159
Psp6I	CCWGG	4 cut(s)	12, 66, 109, 136
PspGI	CCWGG	4 cut(s)	12, 66, 109, 136
PspN4I	GGNNCC	3 cut(s)	72, 84, 178
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	3 cut(s)	70, 71, 163
PstI	CTGCAG	1 cut(s)	162
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	158
Sau96I	GGNCC	3 cut(s)	70, 71, 163
ScaI	AGTACT	1 cut(s)	215
ScrFI	CCNGG	7 cut(s)	14, 31, 68, 74, 111, 138, 148
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	3 cut(s)	15, 133, 185
SfcI	CTRYAG	1 cut(s)	158
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	163
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	2 cut(s)	18, 89
StyD4I	CCNGG	7 cut(s)	12, 29, 66, 72, 109, 136, 146
TatI	WGTACW	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	18, 89
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.