Rh7CG491800

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000422
Physical Location & Seq
Reverse (-)
66142931 .. 66151558
8628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG491800.1

Sequence Viewer

Length: 801 bp
ATGGCAGAAGCCTACACACCAGCTCATCTGAATTACTTAACTCCATTGAATTTGAAACCCTGGTCTGGGAGGCATGCACTGACTTTTAACTCACTCCCTATATTACCCAGCTTTGCTACATGGTGGAAATCCATAGAGAAATACTACCTCTCCAATGCCAAGAAAACCTCATCTGTTTCCCTCTCATTGGGTAACCAGATCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGAACACAGATCAAACAGCTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCTAGCAGATGTGGTACACATGGGTCTTCAAAGAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGCCCGGGTCAATGTGCTTGGCCATTCCACCAACCTATCTATGGACCACAGACCACACCCTTGGTGGCACCCAACAACGATGTCGGTGTGGACGGTATGATCATCAATCTAGCTAGTCTTTTGGCTGGGACCGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCCGGTGTCTATGGGAAAGGAGCATATCCTGGTTATGCTGGAGACCTCTTGGTTGATGCTACAACTGGTGCTAGCTACAATGCAAATGGTTTGAGTGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCCTCAACCTCAACTTGTTCTACTCTTGTATGA

Protein Analysis

266

Amino Acids

28.08

Weight (kDa)

8.65

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 35 - 265 2.7e-102 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 502
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 2 cut(s) 274, 455
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 352, 746
AfiI CCNNNNNNNGG 5 cut(s) 65, 66, 187, 439, 476
AgsI TTSAA 3 cut(s) 49, 55, 366
AjnI CCWGG 3 cut(s) 59, 597, 667
AluBI AGCT 8 cut(s) 23, 111, 213, 259, 372, 393, 548, 714
AluI AGCT 8 cut(s) 23, 111, 213, 259, 372, 393, 548, 714
Alw21I GWGCWC 2 cut(s) 374, 395
Alw26I GTCTC 2 cut(s) 422, 675
AlwI GGATC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 2 cut(s) 274, 455
ApeKI GCWGC 2 cut(s) 263, 626
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 479, 564, 602
AsuC2I CCSGG 3 cut(s) 440, 441, 642
AsuNHI GCTAGC 1 cut(s) 710
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 3 cut(s) 479, 564, 602
BalI TGGCCA 2 cut(s) 276, 457
BanI GGYRCC 1 cut(s) 502
BanII GRGCYC 2 cut(s) 374, 395
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 2 cut(s) 374, 395
BbvI GCAGC 2 cut(s) 275, 613
BccI CCATC 2 cut(s) 296, 320
BciT130I CCWGG 3 cut(s) 61, 599, 669
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 3 cut(s) 440, 441, 642
BcoDI GTCTC 2 cut(s) 422, 675
BfaI CTAG 4 cut(s) 339, 545, 549, 711
BisI GCNGC 2 cut(s) 264, 627
BlsI GCNGC 2 cut(s) 265, 628
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 6 cut(s) 61, 440, 441, 599, 642, 669
Bme18I GGWCC 3 cut(s) 479, 564, 602
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 3 cut(s) 479, 564, 602
BmiI GGNNCC 5 cut(s) 504, 565, 603, 604, 615
BmrFI CCNGG 6 cut(s) 61, 440, 441, 599, 642, 669
BmsI GCATC 1 cut(s) 685
BmtI GCTAGC 1 cut(s) 714
BpiI GAAGAC 1 cut(s) 354
BplI GAGNNNNNCTC 4 cut(s) 200, 232, 202, 234
BpmI CTGGAG 1 cut(s) 699
BpuMI CCSGG 3 cut(s) 440, 441, 642
BsaI GGTCTC 2 cut(s) 422, 675
BsaJI CCNNGG 5 cut(s) 59, 267, 439, 495, 598
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 66, 187, 439, 476
Bse1I ACTGG 1 cut(s) 709
BseBI CCWGG 3 cut(s) 61, 599, 669
BseDI CCNNGG 5 cut(s) 59, 267, 439, 495, 598
BseLI CCNNNNNNNGG 5 cut(s) 65, 66, 187, 439, 476
BseNI ACTGG 1 cut(s) 709
BseXI GCAGC 2 cut(s) 275, 613
BseYI CCCAGC 2 cut(s) 107, 560
BshFI GGCC 2 cut(s) 276, 457
BshNI GGYRCC 1 cut(s) 502
BsiHKAI GWGCWC 2 cut(s) 374, 395
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 2 cut(s) 440, 642
BslFI GGGAC 4 cut(s) 214, 577, 588, 624
BslI CCNNNNNNNGG 5 cut(s) 65, 66, 187, 439, 476
BsmAI GTCTC 2 cut(s) 422, 675
BsmFI GGGAC 4 cut(s) 214, 577, 588, 624
BsnI GGCC 2 cut(s) 276, 457
Bso31I GGTCTC 2 cut(s) 422, 675
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 374, 395
Bsp143I GATC 3 cut(s) 198, 249, 534
BspANI GGCC 2 cut(s) 276, 457
BspLI GGNNCC 5 cut(s) 504, 565, 603, 604, 615
BspOI GCTAGC 1 cut(s) 714
BspPI GGATC 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 502
BspTNI GGTCTC 2 cut(s) 422, 675
BsrI ACTGG 1 cut(s) 709
BssECI CCNNGG 5 cut(s) 59, 267, 439, 495, 598
BssMI GATC 3 cut(s) 198, 249, 534
BssT1I CCWWGG 2 cut(s) 267, 495
Bst2UI CCWGG 3 cut(s) 61, 599, 669
Bst4CI ACNGT 2 cut(s) 530, 568
BstC8I GCNNGC 3 cut(s) 75, 261, 712
BstEII GGTNACC 1 cut(s) 191
BstKTI GATC 3 cut(s) 201, 252, 537
BstMAI GTCTC 2 cut(s) 422, 675
BstMBI GATC 3 cut(s) 198, 249, 534
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 3 cut(s) 61, 599, 669
BstNSI RCATGY 1 cut(s) 77
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 6 cut(s) 59, 438, 439, 597, 640, 667
BstV1I GCAGC 2 cut(s) 275, 613
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 2 cut(s) 276, 457
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 75, 261, 712
Cfr13I GGNCC 3 cut(s) 479, 564, 602
Cfr9I CCCGGG 1 cut(s) 439
Csp6I GTAC 2 cut(s) 351, 745
CviAII CATG 3 cut(s) 74, 120, 356
CviQI GTAC 2 cut(s) 351, 745
DpnI GATC 3 cut(s) 200, 251, 536
DpnII GATC 3 cut(s) 198, 249, 534
EaeI YGGCCR 2 cut(s) 274, 455
Ecl136II GAGCTC 2 cut(s) 372, 393
Eco130I CCWWGG 2 cut(s) 267, 495
Eco24I GRGCYC 2 cut(s) 374, 395
Eco31I GGTCTC 2 cut(s) 422, 675
Eco47I GGWCC 3 cut(s) 479, 564, 602
Eco53kI GAGCTC 2 cut(s) 372, 393
Eco88I CYCGRG 1 cut(s) 439
Eco91I GGTNACC 1 cut(s) 191
EcoICRI GAGCTC 2 cut(s) 372, 393
EcoO109I RGGNCCY 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 191
EcoRII CCWGG 3 cut(s) 59, 597, 667
EcoT14I CCWWGG 2 cut(s) 267, 495
EcoT38I GRGCYC 2 cut(s) 374, 395
ErhI CCWWGG 2 cut(s) 267, 495
FaeI CATG 3 cut(s) 77, 123, 359
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FaqI GGGAC 4 cut(s) 214, 577, 588, 624
FatI CATG 3 cut(s) 73, 119, 355
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 2 cut(s) 264, 627
FriOI GRGCYC 2 cut(s) 374, 395
Fsp4HI GCNGC 2 cut(s) 264, 627
FspBI CTAG 4 cut(s) 339, 545, 549, 711
GluI GCNGC 2 cut(s) 264, 627
GsaI CCCAGC 2 cut(s) 111, 564
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 2 cut(s) 276, 457
HapII CCGG 2 cut(s) 440, 642
Hin1II CATG 3 cut(s) 77, 123, 359
HpaII CCGG 2 cut(s) 440, 642
Hpy166II GTNNAC 2 cut(s) 353, 526
Hpy188I TCNGA 5 cut(s) 30, 313, 383, 419, 427
Hpy8I GTNNAC 2 cut(s) 353, 526
HpyCH4III ACNGT 2 cut(s) 530, 568
HpyCH4V TGCA 2 cut(s) 77, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
Hsp92II CATG 3 cut(s) 77, 123, 359
KflI GGGWCCC 1 cut(s) 602
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 3 cut(s) 198, 249, 534
LmnI GCTCC 3 cut(s) 398, 619, 659
Lsp1109I GCAGC 2 cut(s) 275, 613
LweI GCATC 1 cut(s) 685
MaeI CTAG 4 cut(s) 339, 545, 549, 711
MaeIII GTNAC 2 cut(s) 191, 568
MalI GATC 3 cut(s) 200, 251, 536
MboI GATC 3 cut(s) 198, 249, 534
MboII GAAGA 2 cut(s) 354, 751
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 374, 395
MlsI TGGCCA 2 cut(s) 276, 457
MluCI AATT 3 cut(s) 31, 49, 321
MluNI TGGCCA 2 cut(s) 276, 457
MmeI TCCRAC 2 cut(s) 220, 397
Mox20I TGGCCA 2 cut(s) 276, 457
MscI TGGCCA 2 cut(s) 276, 457
MseI TTAA 2 cut(s) 38, 87
Msp20I TGGCCA 2 cut(s) 276, 457
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 2 cut(s) 440, 642
MspR9I CCNGG 6 cut(s) 61, 440, 441, 599, 642, 669
MvaI CCWGG 3 cut(s) 61, 599, 669
MwoI GCNNNNNNNGC 1 cut(s) 632
NciI CCSGG 3 cut(s) 440, 441, 642
NdeII GATC 3 cut(s) 198, 249, 534
NheI GCTAGC 1 cut(s) 710
NlaIII CATG 3 cut(s) 77, 123, 359
NlaIV GGNNCC 5 cut(s) 504, 565, 603, 604, 615
NmuCI GTSAC 1 cut(s) 568
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PkrI GCNGC 2 cut(s) 265, 628
PpuMI RGGWCCY 1 cut(s) 602
Psp124BI GAGCTC 2 cut(s) 374, 395
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 59, 597, 667
PspEI GGTNACC 1 cut(s) 191
PspFI CCCAGC 2 cut(s) 107, 560
PspGI CCWGG 3 cut(s) 59, 597, 667
PspN4I GGNNCC 5 cut(s) 504, 565, 603, 604, 615
PspPI GGNCC 3 cut(s) 479, 564, 602
PspPPI RGGWCCY 1 cut(s) 602
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 2 cut(s) 352, 746
RsaNI GTAC 2 cut(s) 351, 745
SacI GAGCTC 2 cut(s) 374, 395
SaqAI TTAA 2 cut(s) 38, 87
SatI GCNGC 2 cut(s) 264, 627
Sau3AI GATC 3 cut(s) 198, 249, 534
Sau96I GGNCC 3 cut(s) 479, 564, 602
ScaI AGTACT 1 cut(s) 746
ScrFI CCNGG 6 cut(s) 61, 440, 441, 599, 642, 669
SduI GDGCHC 2 cut(s) 374, 395
SfaNI GCATC 1 cut(s) 685
SinI GGWCC 3 cut(s) 479, 564, 602
SmaI CCCGGG 1 cut(s) 441
SphI GCATGC 1 cut(s) 77
Sse9I AATT 3 cut(s) 31, 49, 321
SspMI CTAG 4 cut(s) 339, 545, 549, 711
SstI GAGCTC 2 cut(s) 374, 395
StyD4I CCNGG 6 cut(s) 59, 438, 439, 597, 640, 667
StyI CCWWGG 2 cut(s) 267, 495
TaaI ACNGT 2 cut(s) 530, 568
TaqI TCGA 1 cut(s) 204
TasI AATT 3 cut(s) 31, 49, 321
TatI WGTACW 1 cut(s) 744
Tru1I TTAA 2 cut(s) 38, 87
Tru9I TTAA 2 cut(s) 38, 87
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 2 cut(s) 263, 626
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 1 cut(s) 367
TspMI CCCGGG 1 cut(s) 439
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 3 cut(s) 479, 564, 602
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 2 cut(s) 473, 496
XmaI CCCGGG 1 cut(s) 439
XspI CTAG 4 cut(s) 339, 545, 549, 711
ZrmI AGTACT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.