Rh7DG460000

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000422
Physical Location & Seq
Reverse (-)
65425382 .. 65432329
6948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG460000.1

Sequence Viewer

Length: 870 bp
ATGGTTTCTTCTGCTTCCAAACAACCTATACTCTTCCAATACCACAATGGCCCTCTTCTCACTGGCAAAATCTCCATCAATTTGATCTGGTATGGCAAATTCAAGCCTTCCCAGCGCGCAATTGTTTCCGATTTCATCACCTCCCTTTCCACTTCTTCTCCATCTATAAACCAACCATCAGTTGCTACATGGTGGAAATCCATAGAGAAATACTACCTCTCCAATGCCAAGAAAACCTCATCTGTTTCCCTCTCATTGGGTAACCAGATCCTCGATGAGAGCTACTCTCTGGGCAAGTCCCTATCTGTTGGAACACAGATCAAACAGCTGGCAGCCAAGGGTGGCCAGAGTAATGCCATCAATGTTGTTTTGACCTCATCAGATGTTCTAATTGATGGGTTTTGCTCTAGCAGATGTGGTACACATGGGTCTTCAAAGAGCTCTTTCATCAGAGGCAAGAGCTCCAAGTTTGCTTACATCTGGGTCGGAAACTCCGAGACCCAATGCCCGGGTCAATGTGCTTGGCCATTCCACCAACCTATCTATGGACCACAGACCACACCCTTGGTGGCACCCAACAACGATGTCGGTGTGGACGGTATGATCATCAATCTAGCTAGTCTTTTGGCTGGGACCGTGACCAACCCTTTTGGAAATGGGTTCTACCAGGGTCCCAAAGAGGCTCCATTAGAGGCTGCTTCGGCTTGTCCCGGTGTCTATGGGAAAGGAGCATATCCTGGTTATGCTGGAGACCTCTTGGTTGATGCTACAACTGGTGCTAGCTACAATGCAAATGGTTTGAGTGGGAAGAAGTACTTGCTTCCTGCTTTGTTTGACCCCTCAACCTCAACTTGTTCTACTCTTGTATGA

Protein Analysis

289

Amino Acids

30.48

Weight (kDa)

9.02

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 13 - 288 4.7e-125 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35140 AT4G08950
fragaria_vesca FvH4_5g36900 FvH4_5g36910 FvH4_5g36920 FvH4_5g36930
malus_domestica MD08G1185900.v1.1 MD08G1186000.v1.1 MD08G1186100.v1.1 MD08G1186300.v1.1 MD15G1372200.v1.1 MD15G1372400.v1.1
prunus_persica Prupe.1G520600_v2.0.a1 Prupe.1G520700_v2.0.a1 Prupe.1G520800_v2.0.a1
pyrus_communis pycom08g15950 pycom08g15960 pycom08g15970 pycom08g16010 pycom15g33320 pycom15g33330
rosa_chinensis RchiOBHm_Chr0c28g0500911 RchiOBHm_Chr0c28g0500921 RchiOBHm_Chr0c28g0500931 RchiOBHm_Chr0c28g0500981 RchiOBHm_Chr0c28g0501021 RchiOBHm_Chr7g0243461 RchiOBHm_Chr7g0243471 RchiOBHm_Chr7g0243481 RchiOBHm_Chr7g0243521 RchiOBHm_Chr7g0243531 RchiOBHm_Chr7g0243541 RchiOBHm_Chr7g0243581 RchiOBHm_Chr7g0243621 RchiOBHm_Chr7g0243641 RchiOBHm_Chr7g0243671 RchiOBHm_Chr7g0243681 RchiOBHm_Chr7g0243691
rosa_laevigata RLG00000000840 RLG00000000841 RLG00000000842 RLG00000000843 RLG00000000844 RLG00000000845
rosa_multiflora Rmu_sc0000477.1_g000001 Rmu_sc0000477.1_g000003 Rmu_sc0001036.1_g000001 Rmu_sc0001036.1_g000002 Rmu_sc0004062.1_g000001 Rmu_sc0007755.1_g000001 Rmu_sc0008223.1_g000001 Rmu_sc0008473.1_g000006 Rmu_sc0009153.1_g000001 Rmu_sc0009153.1_g000002 Rmu_sc0029916.1_g000001
rosa_roxburghii Rroxscaffold_3G00222020 Rroxscaffold_3G00222030 Rroxscaffold_3G00222040 Rroxscaffold_3G00222060 Rroxscaffold_3G00222100
rosa_rugosa Rorug07G0319800.1 Rorug07G0319900 Rorug07G0320000 Rorug07G0320000 Rorug07G0320100 Rorug07G0320200 Rorug07G0320300
rosa_samantha Rh7BG445800 Rh7BG445900 Rh7BG446000 Rh7BG446100 Rh7BG446200 Rh7BG446300 Rh7BG446400 Rh7BG446500 Rh7CG491600 Rh7CG491700 Rh7CG491800 Rh7CG492000 Rh7CG492100 Rh7CG492200 Rh7CG492300 Rh7CG492500 Rh7CG492600 Rh7DG459900 Rh7DG460000 Rh7DG460100 Rh7DG460200 Rh7DG460300 Rh7DG460400 Rh7DG460600 Rh7DG460700
rosa_wichuraiana Rw7G039570 Rw7G039580 Rw7G039590 Rw7G039620 Rw7G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 571
AccII CGCG 1 cut(s) 117
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 2 cut(s) 343, 524
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 2 cut(s) 421, 815
AfiI CCNNNNNNNGG 3 cut(s) 256, 508, 545
AgsI TTSAA 2 cut(s) 103, 435
AjnI CCWGG 2 cut(s) 666, 736
AluBI AGCT 6 cut(s) 282, 328, 441, 462, 617, 783
AluI AGCT 6 cut(s) 282, 328, 441, 462, 617, 783
Alw21I GWGCWC 2 cut(s) 443, 464
Alw26I GTCTC 2 cut(s) 491, 744
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 3 cut(s) 49, 343, 524
ApeKI GCWGC 2 cut(s) 332, 695
ApoI RAATTY 1 cut(s) 98
AspLEI GCGC 2 cut(s) 117, 119
AspS9I GGNCC 4 cut(s) 50, 548, 633, 671
AsuC2I CCSGG 3 cut(s) 509, 510, 711
AsuHPI GGTGA 1 cut(s) 130
AsuNHI GCTAGC 1 cut(s) 779
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 3 cut(s) 548, 633, 671
BalI TGGCCA 2 cut(s) 345, 526
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 2 cut(s) 443, 464
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 443, 464
BbvI GCAGC 2 cut(s) 344, 682
BccI CCATC 5 cut(s) 83, 169, 184, 365, 389
BciT130I CCWGG 2 cut(s) 668, 738
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 3 cut(s) 509, 510, 711
BcoDI GTCTC 2 cut(s) 491, 744
BfaI CTAG 4 cut(s) 408, 614, 618, 780
BisI GCNGC 2 cut(s) 333, 696
BlsI GCNGC 2 cut(s) 334, 697
BmcAI AGTACT 1 cut(s) 815
Bme1390I CCNGG 5 cut(s) 509, 510, 668, 711, 738
Bme18I GGWCC 3 cut(s) 548, 633, 671
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 4 cut(s) 50, 548, 633, 671
BmiI GGNNCC 5 cut(s) 573, 634, 672, 673, 684
BmrFI CCNGG 5 cut(s) 509, 510, 668, 711, 738
BmsI GCATC 1 cut(s) 754
BmtI GCTAGC 1 cut(s) 783
BpiI GAAGAC 1 cut(s) 423
BplI GAGNNNNNCTC 4 cut(s) 269, 301, 271, 303
BpmI CTGGAG 1 cut(s) 768
BpuMI CCSGG 3 cut(s) 509, 510, 711
BsaI GGTCTC 2 cut(s) 491, 744
BsaJI CCNNGG 4 cut(s) 336, 508, 564, 667
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 203, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 508, 545
Bse1I ACTGG 2 cut(s) 67, 778
BseBI CCWGG 2 cut(s) 668, 738
BseDI CCNNGG 4 cut(s) 336, 508, 564, 667
BseLI CCNNNNNNNGG 3 cut(s) 256, 508, 545
BseNI ACTGG 2 cut(s) 67, 778
BsePI GCGCGC 1 cut(s) 115
BseXI GCAGC 2 cut(s) 344, 682
BseYI CCCAGC 2 cut(s) 111, 629
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 51, 345, 526
BshNI GGYRCC 1 cut(s) 571
BsiHKAI GWGCWC 2 cut(s) 443, 464
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 2 cut(s) 509, 711
BslFI GGGAC 4 cut(s) 283, 646, 657, 693
BslI CCNNNNNNNGG 3 cut(s) 256, 508, 545
BsmAI GTCTC 2 cut(s) 491, 744
BsmFI GGGAC 4 cut(s) 283, 646, 657, 693
BsnI GGCC 3 cut(s) 51, 345, 526
Bso31I GGTCTC 2 cut(s) 491, 744
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 2 cut(s) 443, 464
Bsp143I GATC 4 cut(s) 84, 267, 318, 603
BspANI GGCC 3 cut(s) 51, 345, 526
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 5 cut(s) 573, 634, 672, 673, 684
BspOI GCTAGC 1 cut(s) 783
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 2 cut(s) 491, 744
BsrI ACTGG 2 cut(s) 67, 778
BssECI CCNNGG 4 cut(s) 336, 508, 564, 667
BssHII GCGCGC 1 cut(s) 115
BssMI GATC 4 cut(s) 84, 267, 318, 603
BssT1I CCWWGG 2 cut(s) 336, 564
Bst2UI CCWGG 2 cut(s) 668, 738
Bst4CI ACNGT 2 cut(s) 599, 637
Bst6I CTCTTC 2 cut(s) 38, 60
BstC8I GCNNGC 3 cut(s) 117, 330, 781
BstEII GGTNACC 1 cut(s) 260
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 2 cut(s) 117, 119
BstKTI GATC 4 cut(s) 87, 270, 321, 606
BstMAI GTCTC 2 cut(s) 491, 744
BstMBI GATC 4 cut(s) 84, 267, 318, 603
BstMWI GCNNNNNNNGC 2 cut(s) 112, 701
BstNI CCWGG 2 cut(s) 668, 738
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 5 cut(s) 507, 508, 666, 709, 736
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 344, 682
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 267
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 267
BsuRI GGCC 3 cut(s) 51, 345, 526
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 3 cut(s) 117, 330, 781
CfoI GCGC 2 cut(s) 117, 119
Cfr13I GGNCC 4 cut(s) 50, 548, 633, 671
Cfr9I CCCGGG 1 cut(s) 508
Csp6I GTAC 2 cut(s) 420, 814
CviAII CATG 2 cut(s) 189, 425
CviQI GTAC 2 cut(s) 420, 814
DpnI GATC 4 cut(s) 86, 269, 320, 605
DpnII GATC 4 cut(s) 84, 267, 318, 603
EaeI YGGCCR 2 cut(s) 343, 524
Eam1104I CTCTTC 2 cut(s) 38, 60
EarI CTCTTC 2 cut(s) 38, 60
Ecl136II GAGCTC 2 cut(s) 441, 462
Eco130I CCWWGG 2 cut(s) 336, 564
Eco24I GRGCYC 2 cut(s) 443, 464
Eco31I GGTCTC 2 cut(s) 491, 744
Eco47I GGWCC 3 cut(s) 548, 633, 671
Eco53kI GAGCTC 2 cut(s) 441, 462
Eco88I CYCGRG 1 cut(s) 508
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 2 cut(s) 441, 462
EcoO109I RGGNCCY 1 cut(s) 671
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 666, 736
EcoT14I CCWWGG 2 cut(s) 336, 564
EcoT38I GRGCYC 2 cut(s) 443, 464
ErhI CCWWGG 2 cut(s) 336, 564
FaeI CATG 2 cut(s) 192, 428
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 4 cut(s) 283, 646, 657, 693
FatI CATG 2 cut(s) 188, 424
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 2 cut(s) 333, 696
FriOI GRGCYC 2 cut(s) 443, 464
Fsp4HI GCNGC 2 cut(s) 333, 696
FspBI CTAG 4 cut(s) 408, 614, 618, 780
GlaI GCGC 2 cut(s) 116, 118
GluI GCNGC 2 cut(s) 333, 696
GsaI CCCAGC 2 cut(s) 115, 633
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 3 cut(s) 51, 345, 526
HapII CCGG 2 cut(s) 509, 711
HhaI GCGC 2 cut(s) 117, 119
Hin1II CATG 2 cut(s) 192, 428
Hin6I GCGC 2 cut(s) 115, 117
HinP1I GCGC 2 cut(s) 115, 117
HpaII CCGG 2 cut(s) 509, 711
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 422, 595
Hpy188I TCNGA 5 cut(s) 130, 382, 452, 488, 496
Hpy8I GTNNAC 2 cut(s) 422, 595
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 2 cut(s) 599, 637
HpyCH4V TGCA 1 cut(s) 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 701
Hsp92II CATG 2 cut(s) 192, 428
HspAI GCGC 2 cut(s) 115, 117
KflI GGGWCCC 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 4 cut(s) 84, 267, 318, 603
LmnI GCTCC 3 cut(s) 467, 688, 728
Lsp1109I GCAGC 2 cut(s) 344, 682
LweI GCATC 1 cut(s) 754
MaeI CTAG 4 cut(s) 408, 614, 618, 780
MaeIII GTNAC 2 cut(s) 260, 637
MalI GATC 4 cut(s) 86, 269, 320, 605
MboI GATC 4 cut(s) 84, 267, 318, 603
MboII GAAGA 5 cut(s) 25, 47, 147, 423, 820
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 443, 464
MlsI TGGCCA 2 cut(s) 345, 526
MluCI AATT 4 cut(s) 79, 98, 120, 390
MluNI TGGCCA 2 cut(s) 345, 526
MmeI TCCRAC 2 cut(s) 289, 466
Mox20I TGGCCA 2 cut(s) 345, 526
MscI TGGCCA 2 cut(s) 345, 526
Msp20I TGGCCA 2 cut(s) 345, 526
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 2 cut(s) 509, 711
MspR9I CCNGG 5 cut(s) 509, 510, 668, 711, 738
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 2 cut(s) 668, 738
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 112, 701
NciI CCSGG 3 cut(s) 509, 510, 711
NdeII GATC 4 cut(s) 84, 267, 318, 603
NheI GCTAGC 1 cut(s) 779
NlaIII CATG 2 cut(s) 192, 428
NlaIV GGNNCC 5 cut(s) 573, 634, 672, 673, 684
NmuCI GTSAC 1 cut(s) 637
PauI GCGCGC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PkrI GCNGC 2 cut(s) 334, 697
PpuMI RGGWCCY 1 cut(s) 671
Psp124BI GAGCTC 2 cut(s) 443, 464
Psp5II RGGWCCY 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 666, 736
PspEI GGTNACC 1 cut(s) 260
PspFI CCCAGC 2 cut(s) 111, 629
PspGI CCWGG 2 cut(s) 666, 736
PspN4I GGNNCC 5 cut(s) 573, 634, 672, 673, 684
PspPI GGNCC 4 cut(s) 50, 548, 633, 671
PspPPI RGGWCCY 1 cut(s) 671
PsuI RGATCY 1 cut(s) 267
PteI GCGCGC 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 2 cut(s) 421, 815
RsaNI GTAC 2 cut(s) 420, 814
SacI GAGCTC 2 cut(s) 443, 464
SatI GCNGC 2 cut(s) 333, 696
Sau3AI GATC 4 cut(s) 84, 267, 318, 603
Sau96I GGNCC 4 cut(s) 50, 548, 633, 671
ScaI AGTACT 1 cut(s) 815
ScrFI CCNGG 5 cut(s) 509, 510, 668, 711, 738
SduI GDGCHC 2 cut(s) 443, 464
SfaNI GCATC 1 cut(s) 754
SinI GGWCC 3 cut(s) 548, 633, 671
SmaI CCCGGG 1 cut(s) 510
Sse9I AATT 4 cut(s) 79, 98, 120, 390
SspMI CTAG 4 cut(s) 408, 614, 618, 780
SstI GAGCTC 2 cut(s) 443, 464
StyD4I CCNGG 5 cut(s) 507, 508, 666, 709, 736
StyI CCWWGG 2 cut(s) 336, 564
TaaI ACNGT 2 cut(s) 599, 637
TaqI TCGA 1 cut(s) 273
TasI AATT 4 cut(s) 79, 98, 120, 390
TatI WGTACW 1 cut(s) 813
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 2 cut(s) 332, 695
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 2 cut(s) 124, 436
TspMI CCCGGG 1 cut(s) 508
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 3 cut(s) 548, 633, 671
XapI RAATTY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 3 cut(s) 44, 542, 565
XmaI CCCGGG 1 cut(s) 508
XspI CTAG 4 cut(s) 408, 614, 618, 780
ZrmI AGTACT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.